>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 616

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 36/53 (67%)
 Frame = +1

Query: 136 RLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGV 294
           +L++GA+  I +   G  NI+P+LQV ++R +TT    G+   RYR+L+SDG+
Sbjct: 4   QLSEGAIAAIMQ--KGDTNIKPILQVINIRPITT----GNSPPRYRLLMSDGL 50

>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (p70)
          Length = 616

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 36/53 (67%)
 Frame = +1

Query: 136 RLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGV 294
           +L++GA+  I +   G  NI+P+LQV ++R +TT    G+   RYR+L+SDG+
Sbjct: 4   QLSEGAIAAIMQ--KGDTNIKPILQVINIRPITT----GNSPPRYRLLMSDGL 50

>RFA1_CHICK (Q5ZJJ2) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 614

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = +1

Query: 136 RLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGV 294
           RL++GA+  I +   G    +PVLQV + R + T    G+   RYR+L+SDGV
Sbjct: 4   RLSEGAIAAIMQ---GENVYKPVLQVINTRAIAT----GNGPPRYRVLMSDGV 49

>RFA1_MOUSE (Q8VEE4) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 623

 Score = 35.4 bits (80), Expect = 0.037
 Identities = 19/52 (36%), Positives = 36/52 (69%)
 Frame = +1

Query: 139 LTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGV 294
           L++GA+  + +  +   +I+P+LQV ++R ++T    G+ S RYR+L+SDG+
Sbjct: 5   LSEGAIEVMIQQENT--SIKPILQVINIRPIST----GNRSPRYRLLMSDGL 50

>RFA1_XENTR (Q5FW17) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 609

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +1

Query: 133 PRLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGV 294
           P L++GA+  I     G  + +P LQV ++R++ T    G+   RYR+L+SDG+
Sbjct: 4   PVLSEGAISAIL---GGDSSCKPTLQVINIRSINT----GNGPPRYRLLMSDGL 50

>RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (p70)
          Length = 609

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 133 PRLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGV 294
           P+L++GA+  +     G  + +P LQV ++R + T    G+   RYR+L+SDG+
Sbjct: 4   PQLSEGAISAML---GGDSSCKPTLQVINIRPINT----GNGPPRYRLLMSDGL 50

>CORO7_RAT (O35828) Coronin-7 (70 kDa WD repeat tumor rejection antigen)|
           (Fragment)
          Length = 443

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 245 WFLVVTVRRSATCSTGWMFPGPSGSSH--ISLTAP 147
           W+LV+T   SA+CS  W+ P      H   S+ AP
Sbjct: 216 WYLVLTAEVSASCSCTWLMPWQKALQHCWASIVAP 250

>HPLN2_HUMAN (Q9GZV7) Hyaluronan and proteoglycan link protein 2 precursor|
           (Brain link protein 1)
          Length = 340

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 209 CSTGWMFPGPSGSSHISLTAPCVSRGAPSIPS 114
           C+ GW+  G      ++  APC  RG P I S
Sbjct: 194 CNAGWLLEGSVRYPVLTARAPCGGRGRPGIRS 225

>TLX2_HUMAN (O43763) T-cell leukemia homeobox protein 2 (Homeobox protein|
           Hox-11L1) (Neural crest homeobox protein)
          Length = 284

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -1

Query: 185 GPSG----SSHISLTAPCVSRGAPSIPSPAGRGG 96
           GP G     +H  L  P  + GAP++P P+G GG
Sbjct: 76  GPGGVIRVPAHRPLPVPPPAGGAPAVPGPSGLGG 109

>SFTPD_HUMAN (P35247) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 375

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 188 PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
           PGP G      T P    G P +P PAGR G
Sbjct: 96  PGPKGD-----TGPSGPPGPPGVPGPAGREG 121

>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV) (Restin) (Related to endostatin)]
          Length = 1388

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 188  PGPSGSSHISLTAPCVSRGAPSIPSPAGRG 99
            PGP+G    ++  P    GAP +P P G G
Sbjct: 1061 PGPAGQKGETVVGPQGPPGAPGLPGPPGFG 1090

>PHSA_STRAT (Q53692) Phenoxazinone synthase (EC 1.-.-.-) (PHS)|
          Length = 642

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -1

Query: 233 VTVRRSATCSTGWMFPGPSGSSHISLTAPCVSRGAPSIPSP---AGRGGVE 90
           + VRR       W    P GS +  +T+  V  G P  P+P    GRGGVE
Sbjct: 97  IEVRRGQRVRIAWTNRIPKGSEY-PVTSVEVPLGPPGTPAPNTEPGRGGVE 146

>UL70_MCMVS (Q69153) Probable primase (DNA replication protein UL70)|
          Length = 964

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 242 FLVVTVRRSATCSTGWMFPGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
           FL    RR+   S+G +  GP   +H+SL +    + APS+P+  GRGG
Sbjct: 776 FLQSRARRAM--SSGRLPLGPLLRAHLSLES---GQSAPSLPTLVGRGG 819

>SOCS1_HUMAN (O15524) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding|
           protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1)
           (Tec-interacting protein 3) (TIP-3)
          Length = 211

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 PGPSGSSHISLTAPCVSRGAPSIPSPA 108
           P PS SS  S  AP   R  P++P+PA
Sbjct: 23  PEPSSSSSSSPAAPARPRPCPAVPAPA 49

>TLX2_MOUSE (Q61663) T-cell leukemia homeobox protein 2 (Homeobox protein|
           Hox-11L1) (Homeobox TLX-2) (PMUR10F)
          Length = 284

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -1

Query: 185 GPSG----SSHISLTAPCVSRGAPSIPSPAGRGG 96
           GP G     +H  L  P  S  AP++P P+G GG
Sbjct: 76  GPGGVIRVPAHRPLPVPPPSGAAPAVPGPSGLGG 109

>Y8638_RHILO (Q98GR6) UPF0310 protein msl8638|
          Length = 132

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 224 RRSATCSTGWMFPGPSGSSHISLTAPC 144
           RRS+ CSTGW  P  S +  I+  + C
Sbjct: 97  RRSSHCSTGWTSPLASRTGGITCASAC 123

>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 188 PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
           PGP G S   L  P   RG P +P P+G  G
Sbjct: 475 PGPPGESVQGLPGP---RGPPGLPGPSGPPG 502

>FMT_MYCTU (P64134) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 312

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  IRNQSNSTPPRPAGDGMEGAPRLTQGAVREIWELP 177
           I +Q  +  P+PA DG+  AP++T    R  W+LP
Sbjct: 184 IADQRLTPRPQPA-DGVSVAPKITVANARVRWDLP 217

>FMT_MYCBO (P64135) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 312

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  IRNQSNSTPPRPAGDGMEGAPRLTQGAVREIWELP 177
           I +Q  +  P+PA DG+  AP++T    R  W+LP
Sbjct: 184 IADQRLTPRPQPA-DGVSVAPKITVANARVRWDLP 217

>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 188  PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
            PGP G    S T P  S G+   P P GR G
Sbjct: 3000 PGPPGPQGESRTGPPGSTGSRGPPGPPGRPG 3030

>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 188  PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
            PGP G    S T P  S G+   P P GR G
Sbjct: 3004 PGPPGPQGESRTGPPGSTGSRGPPGPPGRPG 3034

>CPR3_CAEEL (P43507) Cathepsin B-like cysteine proteinase 3 precursor (EC|
           3.4.22.-) (Cysteine protease-related 3)
          Length = 370

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -1

Query: 260 DKWPTWFLVVTVRRSATCSTGWMFPGPSGSSHISLTAPCVSRGAPSIP 117
           +KWP    +  +R  ATC + W F    G++ +     C+       P
Sbjct: 100 EKWPDCNTIKLIRNQATCGSCWAF----GAAEVISDRVCIQSNGTQQP 143

>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor|
          Length = 1603

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 185  GPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
            GP G   +  T P   +G P IP P G  G
Sbjct: 1540 GPPGYGKMGATGPMGQQGIPGIPGPPGPMG 1569

>CYSK_YEAST (P53206) Putative cysteine synthase (EC 2.5.1.47) (O-acetylserine|
           sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase)
          Length = 393

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 200 GWMFPGPSGSSHISLTAPCVSRG 132
           GW+F G SGS+ IS+   C + G
Sbjct: 109 GWVFEGTSGSTGISIAVVCNALG 131

>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)|
          Length = 317

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 188 PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
           PGP G    S T P  S G+   P P GR G
Sbjct: 199 PGPPGPQGESRTGPPGSTGSRGPPGPPGRPG 229

>LPIN3_HUMAN (Q9BQK8) Lipin-3 (Lipin 3-like)|
          Length = 851

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 293 TPSESSMR*RSDKWPTWFLVVTVRRSATCSTGWMFPGPSGSSHISLTAPCVSRGAPSIPS 114
           TP  S +R  S     W  +  V R+    +  +  G +G+     T+P   RG PS PS
Sbjct: 232 TPEPSPLRAESHMQWAWGRLPKVARAERPESSVVLEGRAGA-----TSP--PRGGPSTPS 284

Query: 113 PAGRGGVE 90
            +  GGV+
Sbjct: 285 TSVAGGVD 292

>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 188  PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
            PGP G    S T P  S G+   P P GR G
Sbjct: 3001 PGPPGPQGESRTGPPGSTGSRGPPGPPGRPG 3031

>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)|
          Length = 86

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 188 PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 96
           PGP G    S T P  S G+   P P GR G
Sbjct: 51  PGPPGPQGESRTGPPGSTGSRGPPGPPGRPG 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,040,813
Number of Sequences: 219361
Number of extensions: 555486
Number of successful extensions: 1762
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1758
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)