ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 96 8e-17
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 8e-17
3dbj|AK073598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
4gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytans... 44 0.25
5ref|XM_509856.1| PREDICTED: Pan troglodytes similar to myosin, h... 42 0.98
6gb|AY551936.1| Spermophilus lateralis myosin heavy chain fast ty... 42 0.98
7gb|AY943170.1| Cynomys leucurus skeletal muscle myosin heavy cha... 42 0.98
8gb|AC011536.6| Homo sapiens chromosome 19 clone LLNLR-245D11, co... 42 0.98
9ref|NM_003890.1| Homo sapiens Fc fragment of IgG binding protein... 42 0.98
10gb|AC158325.2| Homo sapiens chromosome 19 clone WI2-2169N17, com... 42 0.98
11gb|AC007842.1|AC007842 Homo sapiens chromosome 19, BAC 331191 (C... 42 0.98
12dbj|D84239.1| Homo sapiens mRNA for IgG Fc binding protein, comp... 42 0.98
13gb|AC159312.2| Mus musculus BAC clone RP23-156N21 from chromosom... 40 3.9
14gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcom... 40 3.9
15ref|NM_029453.1| Mus musculus RIKEN cDNA 4930511H01 gene (493051... 40 3.9
16ref|XM_956590.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.9
17ref|XM_326563.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.9
18emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome 40 3.9
19gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 3.9
20emb|AL670007.1|NCB14A6 Neurospora crassa DNA linkage group V BAC... 40 3.9
21dbj|AK015753.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 3.9
22gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, ... 40 3.9
23gb|AC122854.4| Mus musculus BAC clone RP23-178L9 from 1, complet... 40 3.9
24emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 3.9 
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 96/112 (85%)
 Strand = Plus / Plus

                                                                         
Query: 132   gccgcggctgacgcagggggcggtgagggagatatgggagctgccggacgggccggggaa 191
             ||||| |||||||| ||||||||||  || ||||  |||||  ||||||||| |||||| 
Sbjct: 79523 gccgcagctgacgccgggggcggtgcaggcgatagcggagcacccggacgggacggggac 79582

                                                                 
Query: 192   catccagccggtgctgcaggtggcggacctgcgcaccgtcaccaccaagaac 243
              |||||||||||||||||||||| |||| ||||  |||||||||||||||||
Sbjct: 79583 gatccagccggtgctgcaggtggtggacgtgcggcccgtcaccaccaagaac 79634



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 262   gagcgctaccgcatgctgctctccgacggcgt 293
             ||||||| ||| ||| ||||||||||||||||
Sbjct: 79659 gagcgcttccggatgatgctctccgacggcgt 79690
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 96/112 (85%)
 Strand = Plus / Plus

                                                                          
Query: 132    gccgcggctgacgcagggggcggtgagggagatatgggagctgccggacgggccggggaa 191
              ||||| |||||||| ||||||||||  || ||||  |||||  ||||||||| |||||| 
Sbjct: 562124 gccgcagctgacgccgggggcggtgcaggcgatagcggagcacccggacgggacggggac 562183

                                                                  
Query: 192    catccagccggtgctgcaggtggcggacctgcgcaccgtcaccaccaagaac 243
               |||||||||||||||||||||| |||| ||||  |||||||||||||||||
Sbjct: 562184 gatccagccggtgctgcaggtggtggacgtgcggcccgtcaccaccaagaac 562235



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 262    gagcgctaccgcatgctgctctccgacggcgt 293
              ||||||| ||| ||| ||||||||||||||||
Sbjct: 562260 gagcgcttccggatgatgctctccgacggcgt 562291
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>dbj|AK073598.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047G19, full
           insert sequence
          Length = 3170

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                       
Query: 132 gccgcggctgacgcagggggcggtgagggagatatgggagctgccggacgggccggggaa 191
           ||||| |||||||| ||||||||||  || ||||  |||||  ||||||||| |||||| 
Sbjct: 115 gccgcagctgacgccgggggcggtgcaggcgatagcggagcacccggacgggacggggac 174

                                                               
Query: 192 catccagccggtgctgcaggtggcggacctgcgcaccgtcaccaccaagaac 243
            |||||||||||||||||||||| |||| ||||  |||||||| ||||||||
Sbjct: 175 gatccagccggtgctgcaggtggtggacgtgcggcccgtcaccgccaagaac 226



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 262 gagcgctaccgcatgctgctctccgacggcgt 293
           ||||||| ||| ||| ||||||||||||||||
Sbjct: 251 gagcgcttccggatgatgctctccgacggcgt 282
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>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor
            agent ansamitocin biosynthetic gene cluster I, partial
            sequence
          Length = 82746

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 196  cagccggtgctgcaggtggcggacct 221
            |||||||||||||| |||||||||||
Sbjct: 6678 cagccggtgctgcacgtggcggacct 6703
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>ref|XM_509856.1| PREDICTED: Pan troglodytes similar to myosin, heavy polypeptide 7,
            cardiac muscle, beta (LOC452801), mRNA
          Length = 9717

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 192  catccagccggtgctgcaggt 212
            |||||||||||||||||||||
Sbjct: 8944 catccagccggtgctgcaggt 8924
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>gb|AY551936.1| Spermophilus lateralis myosin heavy chain fast type IIx mRNA,
           partial cds
          Length = 500

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 192 catccagccggtgctgcaggt 212
           |||||||||||||||||||||
Sbjct: 87  catccagccggtgctgcaggt 67
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>gb|AY943170.1| Cynomys leucurus skeletal muscle myosin heavy chain type IIx mRNA,
           partial cds
          Length = 610

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 192 catccagccggtgctgcaggt 212
           |||||||||||||||||||||
Sbjct: 87  catccagccggtgctgcaggt 67
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>gb|AC011536.6| Homo sapiens chromosome 19 clone LLNLR-245D11, complete sequence
          Length = 38880

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   caccgtcaccaccaagaacca 245
             |||||||||||||||||||||
Sbjct: 27727 caccgtcaccaccaagaacca 27707



 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   caccgtcaccaccaagaacca 245
             |||||||||||||||||||||
Sbjct: 11476 caccgtcaccaccaagaacca 11456
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>ref|NM_003890.1| Homo sapiens Fc fragment of IgG binding protein (FCGBP), mRNA
          Length = 16382

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 225   caccgtcaccaccaagaacca 245
             |||||||||||||||||||||
Sbjct: 12359 caccgtcaccaccaagaacca 12379



 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 225  caccgtcaccaccaagaacca 245
            |||||||||||||||||||||
Sbjct: 8756 caccgtcaccaccaagaacca 8776



 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 225  caccgtcaccaccaagaacca 245
            |||||||||||||||||||||
Sbjct: 5153 caccgtcaccaccaagaacca 5173
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>gb|AC158325.2| Homo sapiens chromosome 19 clone WI2-2169N17, complete sequence
          Length = 40363

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   caccgtcaccaccaagaacca 245
             |||||||||||||||||||||
Sbjct: 13006 caccgtcaccaccaagaacca 12986
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>gb|AC007842.1|AC007842 Homo sapiens chromosome 19, BAC 331191 (CIT-B-471f3), complete sequence
          Length = 174009

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   caccgtcaccaccaagaacca 245
             |||||||||||||||||||||
Sbjct: 14589 caccgtcaccaccaagaacca 14569
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>dbj|D84239.1| Homo sapiens mRNA for IgG Fc binding protein, complete cds
          Length = 16382

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 225   caccgtcaccaccaagaacca 245
             |||||||||||||||||||||
Sbjct: 12359 caccgtcaccaccaagaacca 12379



 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 225  caccgtcaccaccaagaacca 245
            |||||||||||||||||||||
Sbjct: 8756 caccgtcaccaccaagaacca 8776



 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 225  caccgtcaccaccaagaacca 245
            |||||||||||||||||||||
Sbjct: 5153 caccgtcaccaccaagaacca 5173
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>gb|AC159312.2| Mus musculus BAC clone RP23-156N21 from chromosome 12, complete
             sequence
          Length = 205080

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gagggagatatgggagctgc 175
             ||||||||||||||||||||
Sbjct: 64840 gagggagatatgggagctgc 64821
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>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene
             cluster, partial sequence
          Length = 85915

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   gctgacgcagggggcggtga 157
             ||||||||||||||||||||
Sbjct: 41153 gctgacgcagggggcggtga 41172
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>ref|NM_029453.1| Mus musculus RIKEN cDNA 4930511H01 gene (4930511H01Rik), mRNA
          Length = 2161

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 gatatgggagctgccggacg 181
           ||||||||||||||||||||
Sbjct: 447 gatatgggagctgccggacg 466
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>ref|XM_956590.1| Neurospora crassa OR74A hypothetical protein (NCU01071.1) partial
           mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 218 acctgcgcaccgtcaccacc 237
           ||||||||||||||||||||
Sbjct: 719 acctgcgcaccgtcaccacc 738
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>ref|XM_326563.1| Neurospora crassa OR74A hypothetical protein (NCU01071.1) partial
           mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 218 acctgcgcaccgtcaccacc 237
           ||||||||||||||||||||
Sbjct: 719 acctgcgcaccgtcaccacc 738
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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    agctgccggacgggccgggg 189
              ||||||||||||||||||||
Sbjct: 951954 agctgccggacgggccgggg 951973
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 260     cggagcgctaccgcatgctg 279
               ||||||||||||||||||||
Sbjct: 2931002 cggagcgctaccgcatgctg 2930983
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>emb|AL670007.1|NCB14A6 Neurospora crassa DNA linkage group V BAC contig B14A6
          Length = 91436

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   acctgcgcaccgtcaccacc 237
             ||||||||||||||||||||
Sbjct: 52842 acctgcgcaccgtcaccacc 52861
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>dbj|AK015753.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930511H01 product:hypothetical Trp-Asp
           (WD) repeats profile/Trp-Asp (WD) repeats circular
           profile/G-protein beta WD-40 repeats containing protein,
           full insert sequence
          Length = 2161

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 gatatgggagctgccggacg 181
           ||||||||||||||||||||
Sbjct: 447 gatatgggagctgccggacg 466
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>gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 324604

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     tcctcatctcccccgcccag 72
              ||||||||||||||||||||
Sbjct: 196256 tcctcatctcccccgcccag 196275
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>gb|AC122854.4| Mus musculus BAC clone RP23-178L9 from 1, complete sequence
          Length = 197331

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   gatatgggagctgccggacg 181
             ||||||||||||||||||||
Sbjct: 54439 gatatgggagctgccggacg 54458
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    gcaccgtcaccaccaagaac 243
              ||||||||||||||||||||
Sbjct: 848236 gcaccgtcaccaccaagaac 848255


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,596,087
Number of Sequences: 3902068
Number of extensions: 1596087
Number of successful extensions: 35271
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35174
Number of HSP's gapped (non-prelim): 97
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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