>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome
          Length = 12204

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 273  ccaggccctccgtctcggcgatct 296
            ||||||||||||||||||||||||
Sbjct: 5750 ccaggccctccgtctcggcgatct 5727

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 323    cggtggcctccgccagcggcggc 345
              |||||||||||||||||||||||
Sbjct: 137854 cggtggcctccgccagcggcggc 137832

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 317    cgatggcggtggcctccgccagcggc 342
              ||||||| ||||||||||||||||||
Sbjct: 198828 cgatggccgtggcctccgccagcggc 198803

>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01,
              complete sequence
          Length = 144395

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    gccgccggcccctccgcggcc 139
              |||||||||||||||||||||
Sbjct: 127894 gccgccggcccctccgcggcc 127874

>ref|XM_475797.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 531

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 119 gccgccggcccctccgcggcc 139
           |||||||||||||||||||||
Sbjct: 360 gccgccggcccctccgcggcc 340

>gb|DQ213721.1| Taeniopygia guttata clone 0061P0007A09 mRNA sequence
          Length = 392

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 120 ccgccggcccctccgcggccc 140
           |||||||||||||||||||||
Sbjct: 22  ccgccggcccctccgcggccc 2

>gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence
          Length = 203436

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   ccggcccctccgcggcccaga 143
             |||||||||||||||||||||
Sbjct: 29289 ccggcccctccgcggcccaga 29269

>emb|AL031447.4|HS126A5 Human DNA sequence from clone RP1-126A5 on chromosome 1p36.21-36.33
             Contains the 3' end of the gene for a novel DnaJ
             domain-containing protein, the gene for a novel THAP
             domain-containing protein, the PHF13 gene for PHD finger
             protein 13, the gene for a novel protein (KIAA0469), the
             3' end of the HKR3 gene for GLI-Kruppel family member HKR3
             and two CpG islands, complete sequence
          Length = 112158

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 386   agctctgggaggacccctcct 406
             |||||||||||||||||||||
Sbjct: 55130 agctctgggaggacccctcct 55150

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 8      tcgcgcgccacctcttctgcc 28
              |||||||||||||||||||||
Sbjct: 586661 tcgcgcgccacctcttctgcc 586641



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 280     ctccgtctcggcgatctgttcgcg 303
               ||||| ||||||||||||||||||
Sbjct: 2478523 ctccgcctcggcgatctgttcgcg 2478546

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 119      gccgccggcccctccgcggcc 139
                |||||||||||||||||||||
Sbjct: 26614419 gccgccggcccctccgcggcc 26614399

>dbj|AK073867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I05, full
           insert sequence
          Length = 1481

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 119 gccgccggcccctccgcggcc 139
           |||||||||||||||||||||
Sbjct: 479 gccgccggcccctccgcggcc 459

>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete
              sequence
          Length = 218429

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 50     tcccccagactcctcctcactcccc 74
              ||||||||||||| |||||||||||
Sbjct: 208696 tcccccagactccccctcactcccc 208672

>ref|NM_189352.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  cccccgacggcggcgagcga 115
           ||||||||||||||||||||
Sbjct: 212 cccccgacggcggcgagcga 193

>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete
             sequence
          Length = 190295

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    tcctcccccagactcctcctcact 70
             ||||||||||| ||||||||||||
Sbjct: 13393 tcctcccccagcctcctcctcact 13416

>emb|AL008734.10|HS324M8 Human DNA sequence from clone RP3-324M8 on chromosome 1p36.2-36.3
             Contains the 5' end of the gene for a novel SPRY domain
             containing protein and a CpG island, complete sequence
          Length = 85116

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    cctcccccagactcctcctcactc 71
             |||||||||| |||||||||||||
Sbjct: 13803 cctcccccagcctcctcctcactc 13780

>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence
          Length = 165072

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ctccggcgggctccccgccg 378
             ||||||||||||||||||||
Sbjct: 65135 ctccggcgggctccccgccg 65116

>gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosome 10, complete sequence
          Length = 210757

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     tcctcccccagactcctcctcact 70
              ||||||||||| ||||||||||||
Sbjct: 182415 tcctcccccagcctcctcctcact 182438

>gb|AC008456.6| Homo sapiens chromosome 5 clone CTC-348L5, complete sequence
          Length = 131312

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   ggaggacccctccttcttcc 412
             ||||||||||||||||||||
Sbjct: 62572 ggaggacccctccttcttcc 62553

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 354      cccgcctccggcgggctccccgcc 377
                |||||||||||||| |||||||||
Sbjct: 26079991 cccgcctccggcggcctccccgcc 26079968

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 363      ggcgggctccccgccgcagc 382
                ||||||||||||||||||||
Sbjct: 23252029 ggcgggctccccgccgcagc 23252048

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 96       cccccgacggcggcgagcga 115
                ||||||||||||||||||||
Sbjct: 42318392 cccccgacggcggcgagcga 42318373

>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cccccgacggcggcgagcga 115
             ||||||||||||||||||||
Sbjct: 90349 cccccgacggcggcgagcga 90330

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 321     ggcggtggcctccgccagcggcggcgcg 348
               ||||||||||||| || |||||||||||
Sbjct: 3389157 ggcggtggcctccacctgcggcggcgcg 3389130



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 321     ggcggtggcctccgccagcg 340
               ||||||||||||||||||||
Sbjct: 2093251 ggcggtggcctccgccagcg 2093270

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 323     cggtggcctccgccagcggcggcg 346
               ||||||||| ||||||||||||||
Sbjct: 5851186 cggtggccttcgccagcggcggcg 5851163

>dbj|AP005384.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_D02
          Length = 112773

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   ggcgggctccccgccgcagc 382
             ||||||||||||||||||||
Sbjct: 11175 ggcgggctccccgccgcagc 11194

>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1568_B05
          Length = 115325

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    ggcgggctccccgccgcagc 382
              ||||||||||||||||||||
Sbjct: 109260 ggcgggctccccgccgcagc 109279

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     tccgccagcggcggcgcgat 350
               ||||||||||||||||||||
Sbjct: 3405720 tccgccagcggcggcgcgat 3405739

>gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete sequence
          Length = 122744

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tcttcctcccccagactcct 63
             ||||||||||||||||||||
Sbjct: 54132 tcttcctcccccagactcct 54113

>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
              complete sequence
          Length = 163039

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 354    cccgcctccggcgggctccccgcc 377
              |||||||||||||| |||||||||
Sbjct: 114318 cccgcctccggcggcctccccgcc 114295

>gb|U78050.1|BAU78050 Balansia aristidae 18S ribosomal RNA gene, partial sequence, and
           internal transcribed spacer 1, complete sequence
          Length = 149

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 358 cctccggcgggctccccgcc 377
           ||||||||||||||||||||
Sbjct: 88  cctccggcgggctccccgcc 69


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,426,489
Number of Sequences: 3902068
Number of extensions: 3426489
Number of successful extensions: 79891
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78931
Number of HSP's gapped (non-prelim): 960
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)