ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 260 4e-66
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 260 4e-66
3ref|XM_417442.1| PREDICTED: Gallus gallus similar to Double-stra... 46 0.11
4ref|XM_367963.1| Magnaporthe grisea 70-15 chromosome III predict... 44 0.42
5ref|XM_515048.1| PREDICTED: Pan troglodytes similar to dJ353E16.... 42 1.7
6ref|XM_474291.1| Oryza sativa (japonica cultivar-group), predic... 42 1.7
7gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
8emb|AL031591.19|HS353E16 Human DNA sequence from clone RP3-353E1... 42 1.7
9emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
10gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
11gb|AC000105.41| Homo sapiens Chromosome 22q11.2 MDR Region, comp... 42 1.7
12gb|AC004032.7| Homo sapiens Chromosome 22q11.2 BAC Clone b437g10... 42 1.7
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
15gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 o... 42 1.7
16gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of ... 42 1.7
17dbj|AK109371.2| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
18dbj|AK107749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
19dbj|AK099358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
20dbj|AK073373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
21emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.7
22dbj|D90407.1|RICOZB Oryza sativa (japonica cultivar-group) mRNA ... 42 1.7
23gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
24gb|U57682.1|RCU57682 Rhodobacter capsulatus cosmids 143-147, com... 42 1.7
25ref|XM_531067.1| PREDICTED: Pan troglodytes LOC463769 (LOC463769... 40 6.6
26ref|NM_197421.1| Oryza sativa (japonica cultivar-group) putative... 40 6.6
27ref|NM_193993.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
28ref|NM_196694.1| Oryza sativa (japonica cultivar-group) putative... 40 6.6
29ref|NM_190513.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
30ref|XM_470818.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
31gb|AY596290.1| Haloarcula marismortui ATCC 43049 plasmid pNG100,... 40 6.6
32gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
33gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
34gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom... 40 6.6
35gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.6
36gb|AC121362.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
37gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.6
38gb|BC008842.2| Homo sapiens similar to RIKEN cDNA 1200014N16 gen... 40 6.6
39gb|AC147069.2| Pan troglodytes BAC clone RP43-165H20 from 7, com... 40 6.6
40gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.6
41gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
42gb|DQ155560.1| Hepatitis C virus strain D3 polyprotein gene, par... 40 6.6
43gb|AY224551.1| Oryza sativa (japonica cultivar-group) isolate 26... 40 6.6
44gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genom... 40 6.6
45ref|XM_858050.1| PREDICTED: Canis familiaris similar to Transcri... 40 6.6
46ref|XM_542454.2| PREDICTED: Canis familiaris similar to Transcri... 40 6.6
47gb|BC020784.1| Homo sapiens similar to RIKEN cDNA 1200014N16 gen... 40 6.6
48emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.6
49emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.6
50emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.6
51gb|AC083868.3| Homo sapiens chromosome 7 clone RP11-148L5, compl... 40 6.6
52gb|AE012122.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.6
53dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.6
54gb|AY266289.1| Oryza sativa (japonica cultivar-group) zinc finge... 40 6.6
55gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.6
56gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
57dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
58dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
59dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
60dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
61gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.6
62gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) ch... 40 6.6
63gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 40 6.6
64dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.6
65dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
66ref|NM_080660.2| Homo sapiens similar to RIKEN cDNA 1200014N16 g... 40 6.6
67dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.6
68dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
69dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
70dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
71gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.6
72gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.6
73gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
74gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
75emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.6
76gb|DQ084250.1| Uncultured bacterium BAC10-10, complete sequence ... 40 6.6 
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
             complete sequence
          Length = 169073

 Score =  260 bits (131), Expect = 4e-66
 Identities = 167/179 (93%)
 Strand = Plus / Plus

                                                                         
Query: 290   cacgccgcgcgcccgccgctctccggaccacgcaacgggttccgccgcctcggcctccgc 349
             ||||| ||||| ||||||||| |||| || |||| |||||||||||||||||||||||||
Sbjct: 30254 cacgcggcgcggccgccgctcgccgggccgcgcagcgggttccgccgcctcggcctccgc 30313

                                                                         
Query: 350   ggcatgaagcagcgcctcctcgttgtggccaaccgtctccccgtctccgccaatcgccgc 409
             || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 30314 gggatgaagcagcgcctcctcgtcgtcgccaaccgcctccccgtctccgccaatcgccgc 30373

                                                                        
Query: 410   ggcgaggatcagtggtccctggagatcagcgccggcggcctcgtcagcgcccttctcgg 468
             |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 30374 ggcgaggaccagtggtccctggagatcagcgccggcggcctcgtcagcgccctcctcgg 30432
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  260 bits (131), Expect = 4e-66
 Identities = 167/179 (93%)
 Strand = Plus / Plus

                                                                            
Query: 290      cacgccgcgcgcccgccgctctccggaccacgcaacgggttccgccgcctcggcctccgc 349
                ||||| ||||| ||||||||| |||| || |||| |||||||||||||||||||||||||
Sbjct: 25513847 cacgcggcgcggccgccgctcgccgggccgcgcagcgggttccgccgcctcggcctccgc 25513906

                                                                            
Query: 350      ggcatgaagcagcgcctcctcgttgtggccaaccgtctccccgtctccgccaatcgccgc 409
                || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 25513907 gggatgaagcagcgcctcctcgtcgtcgccaaccgcctccccgtctccgccaatcgccgc 25513966

                                                                           
Query: 410      ggcgaggatcagtggtccctggagatcagcgccggcggcctcgtcagcgcccttctcgg 468
                |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 25513967 ggcgaggaccagtggtccctggagatcagcgccggcggcctcgtcagcgccctcctcgg 25514025



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     gacgtcgctgagcccgccgc 231
               ||||||||||||||||||||
Sbjct: 9270165 gacgtcgctgagcccgccgc 9270146
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>ref|XM_417442.1| PREDICTED: Gallus gallus similar to Double-strand-break repair
            protein rad21 homolog (Pokeweed agglutinin-binding
            protein 29) (PW29) (SCC1 homolog) (LOC419269), mRNA
          Length = 3009

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 209  acggacgtcgctgagcccgccgctgcc 235
            ||||||||||||||||||| |||||||
Sbjct: 2091 acggacgtcgctgagcccggcgctgcc 2117
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>ref|XM_367963.1| Magnaporthe grisea 70-15 chromosome III predicted protein
           (MG07867.4) partial mRNA
          Length = 1338

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 448 cctcgtcagcgcccttctcggcgtga 473
           |||||||||| |||||||||||||||
Sbjct: 276 cctcgtcagcccccttctcggcgtga 301
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>ref|XM_515048.1| PREDICTED: Pan troglodytes similar to dJ353E16.2 (meningioma
           (disrupted in balanced translocation) 1) (LOC458730),
           mRNA
          Length = 5231

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 276 gcgggtcggggggccacgccg 296
           |||||||||||||||||||||
Sbjct: 841 gcgggtcggggggccacgccg 821
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>ref|XM_474291.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1401

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acggcggcggctcgcccaacg 134
           |||||||||||||||||||||
Sbjct: 176 acggcggcggctcgcccaacg 196
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>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0060B06, complete sequence
          Length = 162568

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 328    gttccgccgcctcggcctccg 348
              |||||||||||||||||||||
Sbjct: 108599 gttccgccgcctcggcctccg 108579
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>emb|AL031591.19|HS353E16 Human DNA sequence from clone RP3-353E16 on chromosome 22q11.22-12.3,
             complete sequence
          Length = 189765

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   gcgggtcggggggccacgccg 296
             |||||||||||||||||||||
Sbjct: 30255 gcgggtcggggggccacgccg 30275
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
              complete sequence
          Length = 190432

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    acggcggcggctcgcccaacg 134
              |||||||||||||||||||||
Sbjct: 121643 acggcggcggctcgcccaacg 121623
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>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
           OSJNBb0077M24, complete sequence
          Length = 128920

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 328 gttccgccgcctcggcctccg 348
           |||||||||||||||||||||
Sbjct: 813 gttccgccgcctcggcctccg 793
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>gb|AC000105.41| Homo sapiens Chromosome 22q11.2 MDR Region, complete sequence
          Length = 90223

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   gcgggtcggggggccacgccg 296
             |||||||||||||||||||||
Sbjct: 54110 gcgggtcggggggccacgccg 54130
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>gb|AC004032.7| Homo sapiens Chromosome 22q11.2 BAC Clone b437g10 In BCRL2-GGT Region,
              complete sequence
          Length = 200685

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 276    gcgggtcggggggccacgccg 296
              |||||||||||||||||||||
Sbjct: 144222 gcgggtcggggggccacgccg 144242
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 114      acggcggcggctcgcccaacg 134
                |||||||||||||||||||||
Sbjct: 34210261 acggcggcggctcgcccaacg 34210241



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 428      ctggagatcagcgccggcggcctc 451
                |||||||||||||||| |||||||
Sbjct: 16685627 ctggagatcagcgccgccggcctc 16685604
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 328      gttccgccgcctcggcctccg 348
                |||||||||||||||||||||
Sbjct: 20565805 gttccgccgcctcggcctccg 20565785



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 150     tccggggcagcgcccggcgc 169
               ||||||||||||||||||||
Sbjct: 4413928 tccggggcagcgcccggcgc 4413947
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>gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 of the complete genome
          Length = 24397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 428   ctggagatcagcgccggcggcctcg 452
             |||||||||||||||||| ||||||
Sbjct: 14261 ctggagatcagcgccggcagcctcg 14237
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>gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of the complete genome
          Length = 19372

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 428   ctggagatcagcgccggcggcctcg 452
             |||||||||||||||||| ||||||
Sbjct: 11639 ctggagatcagcgccggcagcctcg 11663
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>dbj|AK109371.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E09, full
           insert sequence
          Length = 1766

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acggcggcggctcgcccaacg 134
           |||||||||||||||||||||
Sbjct: 280 acggcggcggctcgcccaacg 300
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>dbj|AK107749.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H07, full
           insert sequence
          Length = 754

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acggcggcggctcgcccaacg 134
           |||||||||||||||||||||
Sbjct: 280 acggcggcggctcgcccaacg 300
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>dbj|AK099358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044I21, full
           insert sequence
          Length = 1742

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acggcggcggctcgcccaacg 134
           |||||||||||||||||||||
Sbjct: 256 acggcggcggctcgcccaacg 276
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>dbj|AK073373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027D09, full
           insert sequence
          Length = 1753

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acggcggcggctcgcccaacg 134
           |||||||||||||||||||||
Sbjct: 281 acggcggcggctcgcccaacg 301
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>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete
             sequence
          Length = 101125

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   acggcggcggctcgcccaacg 134
             |||||||||||||||||||||
Sbjct: 60961 acggcggcggctcgcccaacg 60941
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>dbj|D90407.1|RICOZB Oryza sativa (japonica cultivar-group) mRNA for oryzain beta,
           complete cds
          Length = 1675

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 acggcggcggctcgcccaacg 134
           |||||||||||||||||||||
Sbjct: 192 acggcggcggctcgcccaacg 212
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 328      gttccgccgcctcggcctccg 348
                |||||||||||||||||||||
Sbjct: 20876040 gttccgccgcctcggcctccg 20876020



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 150     tccggggcagcgcccggcgc 169
               ||||||||||||||||||||
Sbjct: 4422622 tccggggcagcgcccggcgc 4422641
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>gb|U57682.1|RCU57682 Rhodobacter capsulatus cosmids 143-147, complete sequence
          Length = 86896

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 332   cgccgcctcggcctccgcggc 352
             |||||||||||||||||||||
Sbjct: 55138 cgccgcctcggcctccgcggc 55158
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>ref|XM_531067.1| PREDICTED: Pan troglodytes LOC463769 (LOC463769), mRNA
          Length = 1100

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 693 ccgccgcctcggcctccgcg 712
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>ref|NM_197421.1| Oryza sativa (japonica cultivar-group) putative membrane protein
            (OSJNBa0096G08.9), mRNA
          Length = 1620

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 144  gcgtgctccggggcagcgcccggc 167
            ||||||||||||||||||| ||||
Sbjct: 1262 gcgtgctccggggcagcgcgcggc 1285
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>ref|NM_193993.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 813

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 324 acgggttccgccgcctcggcctcc 347
           ||||||||||||||||| ||||||
Sbjct: 87  acgggttccgccgcctccgcctcc 64
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>ref|NM_196694.1| Oryza sativa (japonica cultivar-group) putative DP-like protein
           (OSJNBa0046P18.3), mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 116 ccgccgcctcggcctccgcg 135
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>ref|NM_190513.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 711

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 511 ccgccgcctcggcctccgcg 492
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>ref|XM_470818.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 390

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 gacgtcgctgagcccgccgc 231
           ||||||||||||||||||||
Sbjct: 322 gacgtcgctgagcccgccgc 341
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>gb|AY596290.1| Haloarcula marismortui ATCC 43049 plasmid pNG100, complete sequence
          Length = 33303

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 299   cgcccgccgctctccggaccacgc 322
             |||| |||||||||||||||||||
Sbjct: 24705 cgccggccgctctccggaccacgc 24682
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>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11,
             complete sequence
          Length = 146677

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gacgtcgctgagcccgccgc 231
             ||||||||||||||||||||
Sbjct: 42110 gacgtcgctgagcccgccgc 42091
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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0009F15, complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   tccggggcagcgcccggcgc 169
             ||||||||||||||||||||
Sbjct: 65291 tccggggcagcgcccggcgc 65310
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>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0096G08 map E1363S, complete sequence
          Length = 140681

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   gcgtgctccggggcagcgcccggc 167
             ||||||||||||||||||| ||||
Sbjct: 50497 gcgtgctccggggcagcgcgcggc 50520
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 285     ggggccacgccgcgcgcccgccgc 308
               ||||||||||||||||| ||||||
Sbjct: 1873783 ggggccacgccgcgcgcgcgccgc 1873806
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>gb|AC121362.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009N21,
              complete sequence
          Length = 164925

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    gacgtcgctgagcccgccgc 231
              ||||||||||||||||||||
Sbjct: 146820 gacgtcgctgagcccgccgc 146801
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     ccaacgacggcggcggctcg 127
               ||||||||||||||||||||
Sbjct: 3191916 ccaacgacggcggcggctcg 3191897
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>gb|BC008842.2| Homo sapiens similar to RIKEN cDNA 1200014N16 gene, mRNA (cDNA
           clone MGC:14289 IMAGE:4136104), complete cds
          Length = 1802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 217 ccgccgcctcggcctccgcg 198
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>gb|AC147069.2| Pan troglodytes BAC clone RP43-165H20 from 7, complete sequence
          Length = 193047

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ccgccgcctcggcctccgcg 350
              ||||||||||||||||||||
Sbjct: 153293 ccgccgcctcggcctccgcg 153274
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 109     caacgacggcggcggctcgc 128
               ||||||||||||||||||||
Sbjct: 5090027 caacgacggcggcggctcgc 5090046
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 212      gacgtcgctgagcccgccgc 231
                ||||||||||||||||||||
Sbjct: 22065698 gacgtcgctgagcccgccgc 22065717



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 212      gacgtcgctgagcccgccgc 231
                ||||||||||||||||||||
Sbjct: 15562756 gacgtcgctgagcccgccgc 15562737



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 289     ccacgccgcgcgcccgccgc 308
               ||||||||||||||||||||
Sbjct: 5997026 ccacgccgcgcgcccgccgc 5997045
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>gb|DQ155560.1| Hepatitis C virus strain D3 polyprotein gene, partial cds
          Length = 9360

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 426  ccctggagatcagcgccggcggcc 449
            |||||||||||| |||||||||||
Sbjct: 1357 ccctggagatcatcgccggcggcc 1380
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>gb|AY224551.1| Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA,
           complete cds
          Length = 1041

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 116 ccgccgcctcggcctccgcg 135
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>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete
             sequence
          Length = 115079

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gacgtcgctgagcccgccgc 231
             ||||||||||||||||||||
Sbjct: 62307 gacgtcgctgagcccgccgc 62288
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>ref|XM_858050.1| PREDICTED: Canis familiaris similar to Transcription initiation
           factor TFIID subunit 10 (Transcription initiation factor
           TFIID 30 kDa subunit) (TAF(II)30) (TAFII-30) (TAFII30)
           (STAF28), transcript variant 2 (LOC485336), mRNA
          Length = 1275

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 325 cgggttccgccgcctcggcc 344
           ||||||||||||||||||||
Sbjct: 64  cgggttccgccgcctcggcc 83
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>ref|XM_542454.2| PREDICTED: Canis familiaris similar to Transcription initiation
           factor TFIID subunit 10 (Transcription initiation factor
           TFIID 30 kDa subunit) (TAF(II)30) (TAFII-30) (TAFII30)
           (STAF28), transcript variant 1 (LOC485336), mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 325 cgggttccgccgcctcggcc 344
           ||||||||||||||||||||
Sbjct: 85  cgggttccgccgcctcggcc 104
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>gb|BC020784.1| Homo sapiens similar to RIKEN cDNA 1200014N16 gene, mRNA (cDNA
           clone IMAGE:4773508), complete cds
          Length = 1292

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 275 ccgccgcctcggcctccgcg 256
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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   ccaacgacggcggcggctcg 127
             ||||||||||||||||||||
Sbjct: 78725 ccaacgacggcggcggctcg 78706
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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 435    tcagcgccggcggcctcgtcagcg 458
              |||||||||||||||| |||||||
Sbjct: 114466 tcagcgccggcggcctggtcagcg 114489
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>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             11/14
          Length = 318050

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   ccaacgacggcggcggctcg 127
             ||||||||||||||||||||
Sbjct: 29278 ccaacgacggcggcggctcg 29259
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>gb|AC083868.3| Homo sapiens chromosome 7 clone RP11-148L5, complete sequence
          Length = 183541

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    ccgccgcctcggcctccgcg 350
              ||||||||||||||||||||
Sbjct: 132923 ccgccgcctcggcctccgcg 132942
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>gb|AE012122.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 30 of
            460 of the complete genome
          Length = 10301

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  ggacgatgccggcggtggcg 278
            ||||||||||||||||||||
Sbjct: 4010 ggacgatgccggcggtggcg 4029
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 402     atcgccgcggcgaggatcag 421
               ||||||||||||||||||||
Sbjct: 2701365 atcgccgcggcgaggatcag 2701384
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>gb|AY266289.1| Oryza sativa (japonica cultivar-group) zinc finger transcription
           factor ZFP19 (ZFP19) mRNA, complete cds
          Length = 761

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 526 ccgccgcctcggcctccgcg 507
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    ggacgatgccggcggtggcg 278
              ||||||||||||||||||||
Sbjct: 324890 ggacgatgccggcggtggcg 324909
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>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
             complete sequence
          Length = 111961

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   ccacgccgcgcgcccgccgc 308
             ||||||||||||||||||||
Sbjct: 55561 ccacgccgcgcgcccgccgc 55580
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      ccaacgacggcggcggctcg 127
                ||||||||||||||||||||
Sbjct: 18283638 ccaacgacggcggcggctcg 18283657
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 144      gcgtgctccggggcagcgcccggc 167
                ||||||||||||||||||| ||||
Sbjct: 19789459 gcgtgctccggggcagcgcgcggc 19789482



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 331      ccgccgcctcggcctccgcg 350
                ||||||||||||||||||||
Sbjct: 15303505 ccgccgcctcggcctccgcg 15303486
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 212      gacgtcgctgagcccgccgc 231
                ||||||||||||||||||||
Sbjct: 22058727 gacgtcgctgagcccgccgc 22058746



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 212      gacgtcgctgagcccgccgc 231
                ||||||||||||||||||||
Sbjct: 15557290 gacgtcgctgagcccgccgc 15557271



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 289     ccacgccgcgcgcccgccgc 308
               ||||||||||||||||||||
Sbjct: 5996239 ccacgccgcgcgcccgccgc 5996258
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 331      ccgccgcctcggcctccgcg 350
                ||||||||||||||||||||
Sbjct: 35959652 ccgccgcctcggcctccgcg 35959671



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 324      acgggttccgccgcctcggcctcc 347
                ||||||||||||||||| ||||||
Sbjct: 14495901 acgggttccgccgcctccgcctcc 14495924
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 260     gacgatgccggcggtggcgg 279
               ||||||||||||||||||||
Sbjct: 1558832 gacgatgccggcggtggcgg 1558851
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>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
             complete sequence
          Length = 144720

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   ccgccgcctcggcctccgcg 350
             ||||||||||||||||||||
Sbjct: 20868 ccgccgcctcggcctccgcg 20849
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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gacgtcgctgagcccgccgc 231
             ||||||||||||||||||||
Sbjct: 82584 gacgtcgctgagcccgccgc 82565
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 284     gggggccacgccgcgcgccc 303
               ||||||||||||||||||||
Sbjct: 4390532 gggggccacgccgcgcgccc 4390513
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>dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D11
          Length = 138108

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   ccgccgcctcggcctccgcg 350
             ||||||||||||||||||||
Sbjct: 58330 ccgccgcctcggcctccgcg 58349
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>ref|NM_080660.2| Homo sapiens similar to RIKEN cDNA 1200014N16 gene (MGC14289), mRNA
          Length = 1802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 ccgccgcctcggcctccgcg 350
           ||||||||||||||||||||
Sbjct: 217 ccgccgcctcggcctccgcg 198
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     ccaacgacggcggcggctcg 127
               ||||||||||||||||||||
Sbjct: 3020130 ccaacgacggcggcggctcg 3020111
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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0514H03
          Length = 167230

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 324   acgggttccgccgcctcggcctcc 347
             ||||||||||||||||| ||||||
Sbjct: 55214 acgggttccgccgcctccgcctcc 55237
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>dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G03, full
           insert sequence
          Length = 1683

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 324 acgggttccgccgcctcggcctcc 347
           ||||||||||||||||| ||||||
Sbjct: 110 acgggttccgccgcctccgcctcc 87
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>dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G10, full
           insert sequence
          Length = 1542

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 324 acgggttccgccgcctcggcctcc 347
           ||||||||||||||||| ||||||
Sbjct: 112 acgggttccgccgcctccgcctcc 89
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 320     cgcaacgggttccgccgcctcggc 343
               |||| |||||||||||||||||||
Sbjct: 4112757 cgcagcgggttccgccgcctcggc 4112780
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    acggcggcggctcgcccaac 133
              ||||||||||||||||||||
Sbjct: 109919 acggcggcggctcgcccaac 109938
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 144      gcgtgctccggggcagcgcccggc 167
                ||||||||||||||||||| ||||
Sbjct: 19800735 gcgtgctccggggcagcgcgcggc 19800758



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 331      ccgccgcctcggcctccgcg 350
                ||||||||||||||||||||
Sbjct: 15311746 ccgccgcctcggcctccgcg 15311727
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      ccaacgacggcggcggctcg 127
                ||||||||||||||||||||
Sbjct: 18209959 ccaacgacggcggcggctcg 18209978
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>emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 177034

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   ccaacgacggcggcggctcg 127
             ||||||||||||||||||||
Sbjct: 87356 ccaacgacggcggcggctcg 87337
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>gb|DQ084250.1| Uncultured bacterium BAC10-10, complete sequence of BAC
          Length = 33764

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 434   atcagcgccggcggcctcgtcagcgccc 461
             ||||||||||||| | ||||||||||||
Sbjct: 23328 atcagcgccggcgacatcgtcagcgccc 23355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,296,518
Number of Sequences: 3902068
Number of extensions: 3296518
Number of successful extensions: 177950
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174917
Number of HSP's gapped (non-prelim): 3033
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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