ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27b07 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 110 bits (276), Expect = 1e-24 Identities = 58/75 (77%), Positives = 58/75 (77%) Frame = +1 Query: 223 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 402 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 403 KRLFGSNVLVSGLQG 447 KRLFGSNVLVSGLQG Sbjct: 61 KRLFGSNVLVSGLQG 75
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 108 bits (270), Expect = 6e-24 Identities = 57/75 (76%), Positives = 57/75 (76%) Frame = +1 Query: 223 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 402 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 403 KRLFGSNVLVSGLQG 447 K LFGSNVLVSGLQG Sbjct: 61 KPLFGSNVLVSGLQG 75
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 62.8 bits (151), Expect = 4e-10 Identities = 30/34 (88%), Positives = 32/34 (94%) Frame = +1 Query: 346 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQG 447 EIDEDLHSRQLAVYGRETM+RLF S+VLVSGL G Sbjct: 45 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNG 78
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 47.8 bits (112), Expect = 1e-05 Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 2/42 (4%) Frame = +1 Query: 328 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQG 447 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+G Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRG 82
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 47.8 bits (112), Expect = 1e-05 Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 2/42 (4%) Frame = +1 Query: 328 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQG 447 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+G Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRG 82
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 45.8 bits (107), Expect = 5e-05 Identities = 26/42 (61%), Positives = 31/42 (73%), Gaps = 2/42 (4%) Frame = +1 Query: 328 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQG 447 MA+ G+E IDE L+SRQL V G E MK L S+VLVSGL+G Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRG 82
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = +1 Query: 349 IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQG 447 +DE+L+SRQL V G M+R+ G+ VLVSGLQG Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGARVLVSGLQG 42
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/34 (58%), Positives = 26/34 (76%) Frame = +1 Query: 346 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQG 447 EIDE L+SRQL V G+E M ++ SNVL+ GL+G Sbjct: 13 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKG 46
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/35 (57%), Positives = 25/35 (71%) Frame = +1 Query: 343 NEIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQG 447 N IDE L+SRQL V G E MK++ SNVL+ G +G Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKG 47
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -2 Query: 411 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 265 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>ULE1A_HUMAN (Q9UBE0) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 346 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 364 HSRQLAVYGRETMKRLFGSNVLVSGLQG 447 + RQ+ ++G E KRL S VL+ GL+G Sbjct: 19 YDRQIRLWGLEAQKRLRASRVLLVGLKG 46
>ULE1A_MOUSE (Q9R1T2) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 350 Score = 29.3 bits (64), Expect = 4.6 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 364 HSRQLAVYGRETMKRLFGSNVLVSGLQG 447 + RQ+ ++G E KRL S VL+ G++G Sbjct: 23 YDRQIRLWGLEAQKRLRASRVLIVGMKG 50
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 360 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 265 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -2 Query: 405 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 265 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -2 Query: 411 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 265 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -2 Query: 411 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 265 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 360 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 265 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +3 Query: 360 PAQSPARRLWPRDHEA 407 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +3 Query: 360 PAQSPARRLWPRDHEA 407 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 573 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +2 Query: 14 CNPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 151 C V+ ++ P R + LP+ ++ P R W+ R SRR Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -2 Query: 405 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 265 L L + +A +LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,175,042 Number of Sequences: 219361 Number of extensions: 875253 Number of successful extensions: 3418 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3220 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3415 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
