ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27b06 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 121 bits (303), Expect = 9e-28 Identities = 64/81 (79%), Positives = 64/81 (79%) Frame = +1 Query: 208 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 387 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 388 KRLFGSNVLVSGLQGLGAEIA 450 KRLFGSNVLVSGLQGLGAEIA Sbjct: 61 KRLFGSNVLVSGLQGLGAEIA 81
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 119 bits (297), Expect = 5e-27 Identities = 63/81 (77%), Positives = 63/81 (77%) Frame = +1 Query: 208 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 387 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 388 KRLFGSNVLVSGLQGLGAEIA 450 K LFGSNVLVSGLQGLGAEIA Sbjct: 61 KPLFGSNVLVSGLQGLGAEIA 81
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 73.2 bits (178), Expect = 3e-13 Identities = 36/40 (90%), Positives = 38/40 (95%) Frame = +1 Query: 331 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 EIDEDLHSRQLAVYGRETM+RLF S+VLVSGL GLGAEIA Sbjct: 45 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAEIA 84
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 56.6 bits (135), Expect = 3e-08 Identities = 32/48 (66%), Positives = 37/48 (77%), Gaps = 2/48 (4%) Frame = +1 Query: 313 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+GLG EIA Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIA 88
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 56.6 bits (135), Expect = 3e-08 Identities = 32/48 (66%), Positives = 37/48 (77%), Gaps = 2/48 (4%) Frame = +1 Query: 313 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+GLG EIA Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIA 88
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 54.7 bits (130), Expect = 1e-07 Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 2/48 (4%) Frame = +1 Query: 313 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 MA+ G+E IDE L+SRQL V G E MK L S+VLVSGL+GLG EIA Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIA 88
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 52.4 bits (124), Expect = 5e-07 Identities = 25/39 (64%), Positives = 32/39 (82%) Frame = +1 Query: 334 IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 +DE+L+SRQL V G M+R+ G+ VLVSGLQGLGAE+A Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGARVLVSGLQGLGAEVA 48
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/40 (62%), Positives = 31/40 (77%) Frame = +1 Query: 331 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 EIDE L+SRQL V G+E M ++ SNVL+ GL+GLG EIA Sbjct: 13 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIA 52
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/41 (60%), Positives = 30/41 (73%) Frame = +1 Query: 328 NEIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 N IDE L+SRQL V G E MK++ SNVL+ G +GLG EIA Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIA 53
>ULE1A_MOUSE (Q9R1T2) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 350 Score = 39.7 bits (91), Expect = 0.003 Identities = 18/34 (52%), Positives = 25/34 (73%) Frame = +1 Query: 349 HSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 + RQ+ ++G E KRL S VL+ G++GLGAEIA Sbjct: 23 YDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIA 56
>ULE1A_HUMAN (Q9UBE0) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 346 Score = 39.7 bits (91), Expect = 0.003 Identities = 19/34 (55%), Positives = 25/34 (73%) Frame = +1 Query: 349 HSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIA 450 + RQ+ ++G E KRL S VL+ GL+GLGAEIA Sbjct: 19 YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIA 52
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -2 Query: 396 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Frame = +3 Query: 345 PAQSPARRLWPRDHEA-----PLRLQRPRLWTSGSRCRD 446 P QSPARR W R H+A P Q +W RD Sbjct: 168 PGQSPARRWWKRHHQAEENRHPGEAQALFVWRDNEEHRD 206
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Frame = +3 Query: 345 PAQSPARRLWPRDHEA-----PLRLQRPRLWTSGSRCRD 446 P QSPARR W R H+A P Q +W RD Sbjct: 168 PGQSPARRWWKRHHQAEENRHPGEAQALFVWRDNEEHRD 206
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 345 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 345 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -2 Query: 390 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -2 Query: 396 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -2 Query: 396 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -2 Query: 390 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 L L + +A +LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,748,412 Number of Sequences: 219361 Number of extensions: 868533 Number of successful extensions: 3353 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3350 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
