>CLH_RAT (P11442) Clathrin heavy chain|
          Length = 1675

 Score =  153 bits (386), Expect = 3e-37
 Identities = 81/154 (52%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           SLEL R V+ Q +K LLE WL EDKLECSEELGDLVK+VD  LAL +Y++A    KV+  
Sbjct: 432 SLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQC 491

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPL-DYNTI 358
           FAE  +  KI++Y+K+VGYTPD++FLL+ ++R  P     FA M+ Q E   PL D   I
Sbjct: 492 FAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEE--PLADITQI 549

Query: 359 TDLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
            D+F++ N+I++ TAFLLD LK N      LQTR
Sbjct: 550 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTR 583

>CLH_MOUSE (Q68FD5) Clathrin heavy chain|
          Length = 1675

 Score =  153 bits (386), Expect = 3e-37
 Identities = 81/154 (52%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           SLEL R V+ Q +K LLE WL EDKLECSEELGDLVK+VD  LAL +Y++A    KV+  
Sbjct: 432 SLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQC 491

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPL-DYNTI 358
           FAE  +  KI++Y+K+VGYTPD++FLL+ ++R  P     FA M+ Q E   PL D   I
Sbjct: 492 FAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEE--PLADITQI 549

Query: 359 TDLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
            D+F++ N+I++ TAFLLD LK N      LQTR
Sbjct: 550 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTR 583

>CLH_BOVIN (P49951) Clathrin heavy chain|
          Length = 1675

 Score =  153 bits (386), Expect = 3e-37
 Identities = 81/154 (52%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           SLEL R V+ Q +K LLE WL EDKLECSEELGDLVK+VD  LAL +Y++A    KV+  
Sbjct: 432 SLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQC 491

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPL-DYNTI 358
           FAE  +  KI++Y+K+VGYTPD++FLL+ ++R  P     FA M+ Q E   PL D   I
Sbjct: 492 FAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEE--PLADITQI 549

Query: 359 TDLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
            D+F++ N+I++ TAFLLD LK N      LQTR
Sbjct: 550 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTR 583

>CLH1_HUMAN (Q00610) Clathrin heavy chain 1 (CLH-17)|
          Length = 1674

 Score =  153 bits (386), Expect = 3e-37
 Identities = 81/154 (52%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           SLEL R V+ Q +K LLE WL EDKLECSEELGDLVK+VD  LAL +Y++A    KV+  
Sbjct: 431 SLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQC 490

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPL-DYNTI 358
           FAE  +  KI++Y+K+VGYTPD++FLL+ ++R  P     FA M+ Q E   PL D   I
Sbjct: 491 FAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEE--PLADITQI 548

Query: 359 TDLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
            D+F++ N+I++ TAFLLD LK N      LQTR
Sbjct: 549 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTR 582

>CLH_DROME (P29742) Clathrin heavy chain|
          Length = 1678

 Score =  152 bits (385), Expect = 3e-37
 Identities = 80/154 (51%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           SLEL R V+ Q KK L E WL E+KLECSEELGDLVK  D  LAL IY++A    KV+  
Sbjct: 433 SLELCRPVLLQGKKQLCEKWLKEEKLECSEELGDLVKASDLTLALSIYLRANVPNKVIQC 492

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPL-DYNTI 358
           FAE  +F KI++Y+K+V YTPDY+FLL++++R++P+    FA M+   E   PL D N I
Sbjct: 493 FAETGQFQKIVLYAKKVNYTPDYVFLLRSVMRSNPEQGAGFASMLVAEEE--PLADINQI 550

Query: 359 TDLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
            D+F++ +M+++ TAFLLD LK N      LQTR
Sbjct: 551 VDIFMEHSMVQQCTAFLLDALKHNRPAEGALQTR 584

>CLH2_HUMAN (P53675) Clathrin heavy chain 2 (CLH-22)|
          Length = 1640

 Score =  150 bits (380), Expect = 1e-36
 Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           SLEL  LV+ Q +K LLE WL EDKLECSEELGDLVKT D  LAL +Y++A    KV+  
Sbjct: 432 SLELCHLVLQQGRKQLLEKWLKEDKLECSEELGDLVKTTDPMLALSVYLRANVPSKVIQC 491

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPL-DYNTI 358
           FAE  +F KI++Y+K+VGYTPD++FLL+ +++  P+  + F+ M+ Q E   PL + + I
Sbjct: 492 FAETGQFQKIVLYAKKVGYTPDWIFLLRGVMKISPEQGLQFSRMLVQDEE--PLANISQI 549

Query: 359 TDLFLQRNMIREATAFLLDVLKPNLEEHAFLQT 457
            D+F++ ++I++ T+FLLD LK N      LQT
Sbjct: 550 VDIFMENSLIQQCTSFLLDALKNNRPAEGLLQT 582

>CLH_DICDI (P25870) Clathrin heavy chain|
          Length = 1694

 Score =  148 bits (374), Expect = 6e-36
 Identities = 76/153 (49%), Positives = 102/153 (66%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           SLEL R V+ Q KK +LE WL EDKLECSE+LGD V+  D  LAL IY +A A+ KV+  
Sbjct: 431 SLELVRPVLAQGKKPILEKWLTEDKLECSEQLGDEVRPHDRKLALSIYYRANASDKVITL 490

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPLDYNTIT 361
           FAE  EFDKI+ Y K+  Y PD++FLLQ +   +P GA +FA+ + + EGG  +D N + 
Sbjct: 491 FAETGEFDKIIAYCKKFNYKPDFMFLLQRMANANPMGAADFAVKLVKEEGGPYIDANQVV 550

Query: 362 DLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
           +LF  RNMI+E + FL  +L  +  + A LQT+
Sbjct: 551 ELFSARNMIQETSNFLFAILDGDRPQDANLQTK 583

>CLH_YEAST (P22137) Clathrin heavy chain|
          Length = 1653

 Score =  137 bits (345), Expect = 1e-32
 Identities = 68/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           ++EL+R V+ Q++K L E WL EDKLECSEELGD+VK  D  LAL  Y++A A  KV++ 
Sbjct: 436 TIELARPVLQQDRKQLFEKWLKEDKLECSEELGDIVKPFDTTLALACYLRAGAHAKVISC 495

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFAL-MMSQMEGGCPLDYNTI 358
            AE ++F+KI+ Y ++VGY P++L L+ +++R+ P  A  FA+ ++   E    +D   I
Sbjct: 496 LAELQQFEKIIPYCQKVGYQPNFLVLISSLIRSSPDRASEFAVSLLQNPETASQIDIEKI 555

Query: 359 TDLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
            DLF  +N I++ T+ LLD LK +  +   LQTR
Sbjct: 556 ADLFFSQNHIQQGTSLLLDALKGDTPDQGHLQTR 589

>CLH_CAEEL (P34574) Probable clathrin heavy chain protein 1|
          Length = 1681

 Score =  134 bits (336), Expect = 2e-31
 Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           +LEL R V+ Q +K L+  WL + KLEC EELGDL+K  D + AL +Y++     KVV +
Sbjct: 430 TLELCRPVLAQGRKELITKWLNDQKLECCEELGDLIKPHDVNTALSVYLRGNVPHKVVQS 489

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILR-TDPQGAVNFA-LMMSQMEGGCPL-DYN 352
           FAE  +FDKI++Y+K+VG+ PDYLF L+ ILR ++P     FA L++S+ E G PL D +
Sbjct: 490 FAETGQFDKIVMYAKRVGFQPDYLFQLRQILRNSNPDHGAKFAQLLVSESENGEPLADLS 549

Query: 353 TITDLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
            I D F++   ++  T+FLL+VLK +  E   LQTR
Sbjct: 550 QIIDCFMEVQAVQPCTSFLLEVLKGDKPEEGHLQTR 585

>CLH_SCHPO (Q10161) Probable clathrin heavy chain|
          Length = 1666

 Score =  128 bits (321), Expect = 9e-30
 Identities = 67/153 (43%), Positives = 94/153 (61%)
 Frame = +2

Query: 2   SLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAA 181
           ++EL+R V+ QN+  LLE W  E+KL C+E LGDLVK  +   ALKIY  A    KVV  
Sbjct: 430 TIELARPVLAQNRIQLLEKWYGENKLACTEALGDLVKPYNTPFALKIYETANVPNKVVMC 489

Query: 182 FAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPLDYNTIT 361
            +E  +F K+  Y+ Q   TPDY+ LLQ ++R +P  A  FA  M        ++   I 
Sbjct: 490 LSELGDFGKLATYTSQQNITPDYVSLLQNLVRVNPDQAAEFATQM--FNSNPSINLEKIV 547

Query: 362 DLFLQRNMIREATAFLLDVLKPNLEEHAFLQTR 460
           D+F+ +N++++ATAFLLD LK +  EH+ LQTR
Sbjct: 548 DIFMSQNLVQQATAFLLDALKDDNPEHSHLQTR 580

>TECTA_CHICK (Q9YH85) Alpha-tectorin precursor|
          Length = 2120

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 35  NKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVV 175
           N +  LE+W   D++ C+ E GDL+K  +ND  L    ++R+   ++
Sbjct: 849 NLELFLESWTTFDEI-CNGECGDLLKACNNDSELLKTYRSRSNCAII 894

>Y078_NPVOP (O10331) Hypothetical 11.7 kDa protein (ORF81)|
          Length = 105

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 467 SKTWSEEKHVLPNLVSEHPTEKLLLLVSYFSEGRDQLWYYNPVGNPPPF 321
           ++ WS    VL  LV+      LL ++ YF   RDQ  Y + + N PPF
Sbjct: 51  AEQWSAGVIVLIGLVAFVALFLLLYVIYYFVILRDQPQYSDDIDNDPPF 99

>SECA_AQUAE (O67718) Preprotein translocase secA subunit|
          Length = 984

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +2

Query: 8   ELSRLVVNQNKKNLLENWLA----EDKLECSEELGDLVKTVDNDLALKIYIKARATPKVV 175
           E+ RL    N+ N LE  L     ++ +E ++EL D ++  D +L  ++ IK   TP+V+
Sbjct: 17  EVKRLRKFVNQINELEKELDALTNKELVELAQELHDKIR-FDEELKERV-IKGEITPEVI 74

Query: 176 AAFAERREFDK 208
            AFA  RE  K
Sbjct: 75  KAFALVREAAK 85

>TECTA_MOUSE (O08523) Alpha-tectorin precursor|
          Length = 2155

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 50  LENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARA 160
           LE+W   +++ C+ E GDL+K  +ND  L  + ++R+
Sbjct: 875 LESWTTFEEI-CNGECGDLLKACNNDSELLKFYRSRS 910

>TECTA_HUMAN (O75443) Alpha-tectorin precursor|
          Length = 2155

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 50  LENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARA 160
           LE+W   +++ C+ E GDL+K  +ND  L  + ++R+
Sbjct: 875 LESWTTFEEI-CNGECGDLLKACNNDSELLKFYRSRS 910

>ML328_ARATH (Q9ZVF3) MLP-like protein 328|
          Length = 151

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -1

Query: 464 KTWSEEKHVLPNLVSEHPTEKLLLLVSYFSEGRDQLWYYNPVGNPPPF 321
           K W  E H+ P+ +  H     +    + S G  ++W Y   G P  F
Sbjct: 22  KRWRSENHLFPDAIGHHIQGVTIHDGEWDSHGAIKIWNYTCDGKPEVF 69

>CNTN2_HUMAN (Q02246) Contactin-2 precursor (Axonin-1) (Axonal glycoprotein|
           TAG-1) (Transient axonal glycoprotein 1) (TAX-1)
          Length = 1040

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 155 RATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTD 283
           RA PK V  +++  E   IL+ S +V  TPD   +++ I R+D
Sbjct: 443 RAAPKAVVLWSKGTE---ILVNSSRVTVTPDGTLIIRNISRSD 482

>SDK_DROME (O97394) Protein sidekick precursor|
          Length = 2224

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 464  KTWSEEKHVLPNLVSEHPTEKLLLLVSYFSEGRDQLWYYNPVGNPP 327
            + W EE  V    VS   T   L+ +  F+E R QL  +NP G+ P
Sbjct: 1732 RKWEEEIEV----VSATATSHSLVFLDKFTEYRIQLLAFNPAGDGP 1773


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,979,331
Number of Sequences: 219361
Number of extensions: 1488721
Number of successful extensions: 4556
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4546
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)