ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27a10 |
|---|---|
| Clone Library Name | barley_pub |
>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2| (Retina-derived POU-domain factor 1) (RPF-1) Length = 684 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Frame = +2 Query: 104 PSATN----PRPARGTRINQFHSQLCPRRLSPVATKQPPAPCRALPWRPELRTHQ 256 P +TN P P ++ Q Q P + P A++QPPAP L P+ + HQ Sbjct: 191 PPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQQHQ 245
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +2 Query: 107 SATNPRPARGTRINQFH--SQLCPRRLSPVATKQPPAPCRALPWRPELRTHQCSGQP 271 ++ +P P +GT + S CP + P ++QPP + +P E R H P Sbjct: 794 TSCSPPPEQGTAADSVSPWSHTCPPTVRPATSQQPPKEDQKIPTLAEYRLHGTGSLP 850
>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1821 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +2 Query: 122 RPARGTRINQFHSQLCPRRLSPVATKQPPAPCRALPWRPELRTHQCSG 265 RP+R + + RR +P+ +QP RA P P L T Q SG Sbjct: 105 RPSRAQQSRRVQPPAQTRRSTPLGQQQPAPRTRAAPALPRLGTPQRSG 152
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 30.0 bits (66), Expect = 4.1 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = +2 Query: 107 SATNPRPARGTRINQFHSQLCPRRLSPVATKQPPAPCRALPWRPELRTHQCSGQP 271 S T+P +G + S P + SP++TK P P +A P LR + S P Sbjct: 547 SGTSPLKQKGPQGLGQPSGPLPAKASPLSTKASPLPSKASPQAKPLRASEPSKTP 601
>Y007_MYCTU (P71575) Hypothetical protein Rv0007/MT0007| Length = 304 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = +2 Query: 35 WRQAPHEKAQRGSVVSSPVHAG*PSATNPRPARGTRINQFHSQLCPRRLSPVATKQPPAP 214 W++A ++Q G PV TNP A R+N+F S P A + P P Sbjct: 46 WQRAATRQSQAGHRQPPPVSHPEGRPTNPPAAADARLNRFISGASAPVTGPAAAVRTPQP 105
>TAT_VILV1 (P23428) Trans-activating transcriptional regulatory protein (S| protein) Length = 94 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = -2 Query: 478 RRQVYAYLEFWIDLCPAETEGAVLKRSCSCRL---SYGSSWRGME 353 RRQV + WI + +GA ++R+C CRL +GS R +E Sbjct: 53 RRQVIREAQIWI----WKHKGAAVRRNCGCRLCNPGWGSQVRNVE 93
>MDH_HALMA (Q07841) Malate dehydrogenase (EC 1.1.1.37)| Length = 304 Score = 29.3 bits (64), Expect = 7.0 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 287 VELDGEVDHCIGGCGAPVATGAHGTERVAASWQLDSVD 174 V+L+GE H G PV G++G E + W LD + Sbjct: 249 VKLEGEFGHEDTAFGVPVRLGSNGVEEI-VEWDLDDYE 285
>FA7_RABIT (P98139) Coagulation factor VII precursor (EC 3.4.21.21) (Serum| prothrombin conversion accelerator) [Contains: Factor VII light chain; Factor VII heavy chain] Length = 444 Score = 29.3 bits (64), Expect = 7.0 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -1 Query: 281 LDGEVDHCIGGCGAPVATGAHGT 213 LDG D C G G P AT HGT Sbjct: 372 LDGSKDACKGDSGGPHATSYHGT 394
>IF2_ZYMMO (Q5NQ27) Translation initiation factor IF-2| Length = 989 Score = 29.3 bits (64), Expect = 7.0 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +2 Query: 53 EKAQRGSVVSSPVHAG*PS-ATNPRPARGTRINQFHSQLCPRRLSPVATKQPPAPCRA 223 + A + V++P A P+ A P+P Q S+ P PVA K+ AP A Sbjct: 82 QTATKNETVATPAAAPAPAPAAAPKPVAAEATAQETSKAAPAAAQPVAEKEAAAPASA 139
>HXC5_MOUSE (P32043) Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2)| Length = 222 Score = 28.9 bits (63), Expect = 9.1 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = +2 Query: 80 SSPVHAG*PSATNPRPARGTRINQFHS--QLCPRRLSPVATKQPPAPCRALPWRPELR-T 250 ++P++ G S RPA R + +R P QPPAP + PW +L + Sbjct: 91 AAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQRGQPAGLSQPPAPPQIYPWMTKLHMS 150 Query: 251 HQCSGQPRR 277 H+ G+ R Sbjct: 151 HETDGKRSR 159
>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated| protein 10.3) (High sulfur keratin-associated protein 10.3) (Keratin-associated protein 18-3) (Keratin-associated protein 18.3) Length = 221 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Frame = +1 Query: 109 CHQPPSCSRDAHQPVP---LAALPTSTESS-CHEAATRSVPCAPVATGAPHP 252 C +PP C+ P P L P S SS C +AA PC T + P Sbjct: 26 CCEPPCCAPSCCAPAPCLTLVCTPVSCVSSPCCQAACEPSPCQSGCTSSCTP 77
>ADCY3_RAT (P21932) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase| type III) (Adenylate cyclase, olfactive type) (ATP pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III) (AC3) Length = 1144 Score = 28.9 bits (63), Expect = 9.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -2 Query: 232 PRERTARSGWLLRGNWTQSTWAKLRV 155 P++ A S W+ R W ++TWA L + Sbjct: 686 PKKLVAFSSWIDRTRWARNTWAMLAI 711
>ADCY3_MOUSE (Q8VHH7) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase| type III) (Adenylate cyclase, olfactive type) (ATP pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III) (AC3) Length = 1145 Score = 28.9 bits (63), Expect = 9.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -2 Query: 232 PRERTARSGWLLRGNWTQSTWAKLRV 155 P++ A S W+ R W ++TWA L + Sbjct: 687 PKKLVAFSSWIDRTRWARNTWAMLAI 712 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,963,211 Number of Sequences: 219361 Number of extensions: 1394733 Number of successful extensions: 4390 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4181 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4387 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
