ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27a09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 105 bits (53), Expect = 6e-20 Identities = 123/147 (83%), Gaps = 12/147 (8%) Strand = Plus / Minus Query: 95 cgcagccatggtggag---aggcggccgcggaggaagccgctggtgctcgcgtcgacgca 151 |||||||||||||||| | ||||| ||||||||||||||||||||| || || ||||| Sbjct: 100108 cgcagccatggtggaggcgacgcggcagcggaggaagccgctggtgctggcctccacgca 100049 Query: 152 ggcgctcctcgactcgctcccgggggagcgacgcgggccggccc---------cgccgcc 202 |||||| ||||||||||| |||||||| || |||||| |||||| ||||||| Sbjct: 100048 ggcgctgctcgactcgctgccgggggaccgccgcgggtcggcccttccgccgccgccgcc 99989 Query: 203 gccggagcccgtgcgcctcagggccgg 229 ||||||||| |||||| |||||||||| Sbjct: 99988 gccggagccggtgcgcatcagggccgg 99962
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 105 bits (53), Expect = 6e-20 Identities = 123/147 (83%), Gaps = 12/147 (8%) Strand = Plus / Minus Query: 95 cgcagccatggtggag---aggcggccgcggaggaagccgctggtgctcgcgtcgacgca 151 |||||||||||||||| | ||||| ||||||||||||||||||||| || || ||||| Sbjct: 31403300 cgcagccatggtggaggcgacgcggcagcggaggaagccgctggtgctggcctccacgca 31403241 Query: 152 ggcgctcctcgactcgctcccgggggagcgacgcgggccggccc---------cgccgcc 202 |||||| ||||||||||| |||||||| || |||||| |||||| ||||||| Sbjct: 31403240 ggcgctgctcgactcgctgccgggggaccgccgcgggtcggcccttccgccgccgccgcc 31403181 Query: 203 gccggagcccgtgcgcctcagggccgg 229 ||||||||| |||||| |||||||||| Sbjct: 31403180 gccggagccggtgcgcatcagggccgg 31403154
>dbj|AK067035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G04, full insert sequence Length = 3293 Score = 105 bits (53), Expect = 6e-20 Identities = 123/147 (83%), Gaps = 12/147 (8%) Strand = Plus / Plus Query: 95 cgcagccatggtggag---aggcggccgcggaggaagccgctggtgctcgcgtcgacgca 151 |||||||||||||||| | ||||| ||||||||||||||||||||| || || ||||| Sbjct: 23 cgcagccatggtggaggcgacgcggcagcggaggaagccgctggtgctggcctccacgca 82 Query: 152 ggcgctcctcgactcgctcccgggggagcgacgcgggccggccc---------cgccgcc 202 |||||| ||||||||||| |||||||| || |||||| |||||| ||||||| Sbjct: 83 ggcgctgctcgactcgctgccgggggaccgccgcgggtcggcccttccgccgccgccgcc 142 Query: 203 gccggagcccgtgcgcctcagggccgg 229 ||||||||| |||||| |||||||||| Sbjct: 143 gccggagccggtgcgcatcagggccgg 169
>emb|AL442111.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E11, complete sequence Length = 88090 Score = 105 bits (53), Expect = 6e-20 Identities = 123/147 (83%), Gaps = 12/147 (8%) Strand = Plus / Minus Query: 95 cgcagccatggtggag---aggcggccgcggaggaagccgctggtgctcgcgtcgacgca 151 |||||||||||||||| | ||||| ||||||||||||||||||||| || || ||||| Sbjct: 69339 cgcagccatggtggaggcgacgcggcagcggaggaagccgctggtgctggcctccacgca 69280 Query: 152 ggcgctcctcgactcgctcccgggggagcgacgcgggccggccc---------cgccgcc 202 |||||| ||||||||||| |||||||| || |||||| |||||| ||||||| Sbjct: 69279 ggcgctgctcgactcgctgccgggggaccgccgcgggtcggcccttccgccgccgccgcc 69220 Query: 203 gccggagcccgtgcgcctcagggccgg 229 ||||||||| |||||| |||||||||| Sbjct: 69219 gccggagccggtgcgcatcagggccgg 69193
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 105 bits (53), Expect = 6e-20 Identities = 123/147 (83%), Gaps = 12/147 (8%) Strand = Plus / Minus Query: 95 cgcagccatggtggag---aggcggccgcggaggaagccgctggtgctcgcgtcgacgca 151 |||||||||||||||| | ||||| ||||||||||||||||||||| || || ||||| Sbjct: 23082 cgcagccatggtggaggcgacgcggcagcggaggaagccgctggtgctggcctccacgca 23023 Query: 152 ggcgctcctcgactcgctcccgggggagcgacgcgggccggccc---------cgccgcc 202 |||||| ||||||||||| |||||||| || |||||| |||||| ||||||| Sbjct: 23022 ggcgctgctcgactcgctgccgggggaccgccgcgggtcggcccttccgccgccgccgcc 22963 Query: 203 gccggagcccgtgcgcctcagggccgg 229 ||||||||| |||||| |||||||||| Sbjct: 22962 gccggagccggtgcgcatcagggccgg 22936
>ref|XM_473901.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2823 Score = 99.6 bits (50), Expect = 4e-18 Identities = 106/126 (84%), Gaps = 9/126 (7%) Strand = Plus / Plus Query: 113 gcggccgcggaggaagccgctggtgctcgcgtcgacgcaggcgctcctcgactcgctccc 172 ||||| ||||||||||||||||||||| || || ||||||||||| ||||||||||| || Sbjct: 15 gcggcagcggaggaagccgctggtgctggcctccacgcaggcgctgctcgactcgctgcc 74 Query: 173 gggggagcgacgcgggccggccc---------cgccgccgccggagcccgtgcgcctcag 223 |||||| || |||||| |||||| |||||||||||||||| |||||| |||| Sbjct: 75 gggggaccgccgcgggtcggcccttccgccgccgccgccgccggagccggtgcgcatcag 134 Query: 224 ggccgg 229 |||||| Sbjct: 135 ggccgg 140
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.047 Identities = 29/31 (93%) Strand = Plus / Plus Query: 183 cgcgggccggccccgccgccgccggagcccg 213 |||||||||||| |||| ||||||||||||| Sbjct: 208151 cgcgggccggccacgcctccgccggagcccg 208181
>ref|XM_516819.1| PREDICTED: Pan troglodytes similar to seven in absentia homolog 2 (LOC460781), mRNA Length = 1230 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 453 cgggccggccccgccgccgccg 432
>gb|BC013082.2| Homo sapiens seven in absentia homolog 2 (Drosophila), mRNA (cDNA clone MGC:17169 IMAGE:4153095), complete cds Length = 2347 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 527 cgggccggccccgccgccgccg 506
>ref|NM_005067.5| Homo sapiens seven in absentia homolog 2 (Drosophila) (SIAH2), mRNA Length = 2632 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 825 cgggccggccccgccgccgccg 804
>emb|Y15268.1|HSSIAH2 Homo sapiens mRNA for Siah2 protein Length = 975 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 198 cgggccggccccgccgccgccg 177
>emb|CR610024.1| full-length cDNA clone CS0DL007YN18 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2243 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 483 cgggccggccccgccgccgccg 462
>dbj|AK223565.1| Homo sapiens mRNA for seven in absentia homolog 2 variant, clone: FCC128C06 Length = 1647 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 474 cgggccggccccgccgccgccg 453
>gb|AC011317.23| Homo sapiens 3 BAC RP11-103G8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147097 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 104911 cgggccggccccgccgccgccg 104932
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 gccggccccgccgccgccggag 209 |||||||||||||||||||||| Sbjct: 292012 gccggccccgccgccgccggag 292033
>gb|U76248.1|HSU76248 Human hSIAH2 mRNA, complete cds Length = 2240 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgggccggccccgccgccgccg 206 |||||||||||||||||||||| Sbjct: 724 cgggccggccccgccgccgccg 703
>ref|XM_867701.1| PREDICTED: Bos taurus hypothetical protein LOC615797 (LOC615797), mRNA Length = 627 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ggccggccccgccgccgccgg 207 ||||||||||||||||||||| Sbjct: 124 ggccggccccgccgccgccgg 104
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 cgcgggccggccccgccgccgccgg 207 |||| |||||||||||||||||||| Sbjct: 93419 cgcgcgccggccccgccgccgccgg 93443
>ref|XM_538304.2| PREDICTED: Canis familiaris similar to mitogen-activated protein kinase 8 interacting protein 2 isoform 3, transcript variant 1 (LOC481183), mRNA Length = 2475 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 gccccgccgccgccggagccc 212 ||||||||||||||||||||| Sbjct: 1258 gccccgccgccgccggagccc 1278
>emb|CR703114.2|CNS0G5H2 Tetraodon nigroviridis full-length cDNA Length = 1729 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 ggccggccccgccgccgccggagcc 211 |||||||||||||||||||| |||| Sbjct: 1168 ggccggccccgccgccgccgcagcc 1192
>emb|CR691668.2|CNS0FWN4 Tetraodon nigroviridis full-length cDNA Length = 1704 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 ggccggccccgccgccgccggagcc 211 |||||||||||||||||||| |||| Sbjct: 1143 ggccggccccgccgccgccgcagcc 1167
>gb|AC104447.2| Homo sapiens chromosome 3 clone RP11-447D11, complete sequence Length = 202544 Score = 42.1 bits (21), Expect = 0.74 Identities = 27/29 (93%) Strand = Plus / Minus Query: 178 agcgacgcgggccggccccgccgccgccg 206 |||||||||||||| ||| |||||||||| Sbjct: 11118 agcgacgcgggccgcccctgccgccgccg 11090
>gb|S53630.1| Zea mays auxin-binding protein (ABP) mRNA, complete cds Length = 795 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 ccgccgccgccggagcccgtg 215 ||||||||||||||||||||| Sbjct: 58 ccgccgccgccggagcccgtg 78
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 cgcgggccggccccgccgccgccgg 207 |||| |||||||||||||||||||| Sbjct: 21887985 cgcgcgccggccccgccgccgccgg 21888009
>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence Length = 181750 Score = 42.1 bits (21), Expect = 0.74 Identities = 27/29 (93%) Strand = Plus / Minus Query: 178 agcgacgcgggccggccccgccgccgccg 206 |||||||||||||| ||| |||||||||| Sbjct: 179214 agcgacgcgggccgcccctgccgccgccg 179186
>gb|AC116565.4| Homo sapiens BAC clone RP11-1263C18 from 4, complete sequence Length = 97217 Score = 42.1 bits (21), Expect = 0.74 Identities = 27/29 (93%) Strand = Plus / Plus Query: 185 cgggccggccccgccgccgccggagcccg 213 |||||| || ||||||||||||||||||| Sbjct: 62976 cgggcccgcgccgccgccgccggagcccg 63004
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 cgcgggccggccccgccgccgccgg 207 |||| |||||||||||||||||||| Sbjct: 18702 cgcgcgccggccccgccgccgccgg 18726
>dbj|AK103673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136A07, full insert sequence Length = 2171 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 cgcgggccggccccgccgccgccgg 207 |||| |||||||||||||||||||| Sbjct: 1287 cgcgcgccggccccgccgccgccgg 1311
>dbj|AK068834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159M18, full insert sequence Length = 1834 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 cgcgggccggccccgccgccgccgg 207 |||| |||||||||||||||||||| Sbjct: 911 cgcgcgccggccccgccgccgccgg 935
>dbj|AB001981.1| Columba livia DNA for alpha-D globin, alpha-A globin Length = 5891 Score = 42.1 bits (21), Expect = 0.74 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 ccggccccgccgccgccggagcccg 213 |||||||||||||||| |||||||| Sbjct: 4790 ccggccccgccgccgctggagcccg 4766
>gb|L08425.1|MZEABP1X Zea mays auxin-binding protein (abp1) gene, exons 1-5 and complete cds Length = 5574 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 ccgccgccgccggagcccgtg 215 ||||||||||||||||||||| Sbjct: 1266 ccgccgccgccggagcccgtg 1286
>gb|DQ214976.1| Taeniopygia guttata clone 0058P0008D08 mitochondrial ribosomal protein L20 variant 2-like mRNA, complete sequence Length = 888 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gggggccgcagccatggtgg 108 |||||||||||||||||||| Sbjct: 1 gggggccgcagccatggtgg 20
>gb|DQ214975.1| Taeniopygia guttata clone 0058P0047B04 mitochondrial ribosomal protein L20 variant 2-like mRNA, complete sequence Length = 888 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gggggccgcagccatggtgg 108 |||||||||||||||||||| Sbjct: 1 gggggccgcagccatggtgg 20
>gb|DQ213280.1| Taeniopygia guttata clone 0061P0017G02 mRNA sequence Length = 358 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gggccggccccgccgccgcc 205 |||||||||||||||||||| Sbjct: 157 gggccggccccgccgccgcc 176
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 gccggccccgccgccgccggagcc 211 ||||||||||||| |||||||||| Sbjct: 3942506 gccggccccgccggcgccggagcc 3942483
>ref|NM_008734.1| Mus musculus neuregulin 3 (Nrg3), mRNA Length = 2538 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cccgccgccgccggagcccg 213 |||||||||||||||||||| Sbjct: 186 cccgccgccgccggagcccg 205
>ref|XM_538534.2| PREDICTED: Canis familiaris similar to germ cell-less protein, transcript variant 1 (LOC481414), mRNA Length = 2931 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggccggccccgccgccgccg 206 |||||||||||||||||||| Sbjct: 133 ggccggccccgccgccgccg 114
>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04, complete sequence Length = 164882 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ccggccccgccgccgccgga 208 |||||||||||||||||||| Sbjct: 46309 ccggccccgccgccgccgga 46328
>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome Length = 154746 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 179 gcgacgcgggccggccccgccgccgccg 206 ||||||| ||||| |||||||||||||| Sbjct: 58939 gcgacgccggccgcccccgccgccgccg 58966
>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide synthesis gene cluster, partial sequence Length = 124311 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gccggccccgccgccgccgg 207 |||||||||||||||||||| Sbjct: 43608 gccggccccgccgccgccgg 43589
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 gccggccccgccgccgccggagcc 211 ||||||||||||| |||||||||| Sbjct: 132430 gccggccccgccggcgccggagcc 132407
>dbj|AK140379.1| Mus musculus adult male cortex cDNA, RIKEN full-length enriched library, clone:B530045B12 product:unclassifiable, full insert sequence Length = 3826 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cccgccgccgccggagcccg 213 |||||||||||||||||||| Sbjct: 476 cccgccgccgccggagcccg 457
>emb|AJ507603.1|SKE507603 Selaginella kerstingii partial 26S rRNA gene Length = 1177 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tcttcccggggggccgcagc 100 |||||||||||||||||||| Sbjct: 549 tcttcccggggggccgcagc 530
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ccggccccgccgccgccgga 208 |||||||||||||||||||| Sbjct: 5836425 ccggccccgccgccgccgga 5836444
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggccggccccgccgccgccg 206 |||||||||||||||||||| Sbjct: 22134543 ggccggccccgccgccgccg 22134524
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 aggcgctcctcgactcgctc 170 |||||||||||||||||||| Sbjct: 6396685 aggcgctcctcgactcgctc 6396704
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gcgggccggccccgccgccgccgg 207 ||||||||| |||||||||||||| Sbjct: 2102256 gcgggccggtcccgccgccgccgg 2102279
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0058I18 Length = 151453 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggccggccccgccgccgccg 206 |||||||||||||||||||| Sbjct: 88199 ggccggccccgccgccgccg 88180
>dbj|AK109557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D08, full insert sequence Length = 1630 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 ggccggccccgccgccgccg 206 |||||||||||||||||||| Sbjct: 944 ggccggccccgccgccgccg 963
>emb|AL929373.15| Mouse DNA sequence from clone RP23-31K16 on chromosome 4, complete sequence Length = 169690 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tcgactctctccctcttccc 87 |||||||||||||||||||| Sbjct: 130222 tcgactctctccctcttccc 130241
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ccggccccgccgccgccgga 208 |||||||||||||||||||| Sbjct: 5902902 ccggccccgccgccgccgga 5902921
>emb|CT030231.6| Mouse DNA sequence from clone RP24-331M15 on chromosome 14, complete sequence Length = 163967 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cccgccgccgccggagcccg 213 |||||||||||||||||||| Sbjct: 102550 cccgccgccgccggagcccg 102569
>gb|AF010130.1|AF010130 Mus musculus neuregulin-3 (NRG3) mRNA, complete cds Length = 2538 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cccgccgccgccggagcccg 213 |||||||||||||||||||| Sbjct: 186 cccgccgccgccggagcccg 205
>gb|U97033.1|MMU97033 Mus musculus leptin receptor (Db) gene, intron before codon for P664, 3' end Length = 237 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tcgactctctccctcttccc 87 |||||||||||||||||||| Sbjct: 81 tcgactctctccctcttccc 100
>gb|U61149.1|GGU61149 Gallus gallus atonal homolog 1 (Cath1) gene, complete cds Length = 485 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 cgcgggccggccccgccgccgccg 206 ||||| |||||||||||||||||| Sbjct: 227 cgcggcccggccccgccgccgccg 204
>dbj|D10658.1|HS2ICP11 Herpes simplex virus type 2 genes for DNA binding protein ICP8 (complete cds), UR28 (partial cds) and HSV-2 specific ORF (complete cds) Length = 5011 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 179 gcgacgcgggccggccccgccgccgccg 206 ||||||| ||||| |||||||||||||| Sbjct: 3820 gcgacgccggccgcccccgccgccgccg 3793
>emb|AL663032.9| Mouse DNA sequence from clone RP23-27I6 on chromosome X, complete sequence Length = 162995 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 ccccgccgccgccggagcccgtgc 216 ||||||||||||| |||||||||| Sbjct: 97787 ccccgccgccgcccgagcccgtgc 97810 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,017,802 Number of Sequences: 3902068 Number of extensions: 2017802 Number of successful extensions: 59584 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58421 Number of HSP's gapped (non-prelim): 1158 length of query: 229 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 207 effective length of database: 17,147,199,772 effective search space: 3549470352804 effective search space used: 3549470352804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
