ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27a08 |
|---|---|
| Clone Library Name | barley_pub |
>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490| Length = 1058 Score = 225 bits (573), Expect = 5e-59 Identities = 105/137 (76%), Positives = 126/137 (91%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247 KKVDERIRTLIENGV+ R RSMF+I+GDK+RDQIVNL+++L+KS VKS PSVLWCY+N+L Sbjct: 3 KKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKNRL 62 Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCIL 427 +ISSH KKRAKQ+KK+ +RG +DPEK D FSLFL+ D+T+C+YKDSER+LGNTFG+CIL Sbjct: 63 DISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILGNTFGICIL 122 Query: 428 QDFEALTPNLLARTIET 478 QDFEALTPNLLARTIET Sbjct: 123 QDFEALTPNLLARTIET 139
>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940| Length = 1024 Score = 216 bits (549), Expect = 3e-56 Identities = 100/137 (72%), Positives = 123/137 (89%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247 KKVDERIRTLIENGV+ R RSMF+I+GDKSRDQIVNL++ML+K+ +K PSVLWCY++KL Sbjct: 3 KKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQIVNLHHMLSKAVIKCNPSVLWCYKDKL 62 Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCIL 427 +ISSH++KR+KQ+K+L +RG +DPEK D FS L+ +T+C+YKDSER+LGNTFGMCIL Sbjct: 63 DISSHKQKRSKQLKRLRERGQLDPEKLDAFSRLLDVGRVTHCLYKDSERILGNTFGMCIL 122 Query: 428 QDFEALTPNLLARTIET 478 QDFEALTPNLLARTIET Sbjct: 123 QDFEALTPNLLARTIET 139
>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)| Length = 1025 Score = 187 bits (476), Expect = 9e-48 Identities = 83/137 (60%), Positives = 115/137 (83%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247 KKVD RIR LIENGV +RQRS+F++VGD+ +DQ+V L++ML+K+ VK+RPSVLWCY+ +L Sbjct: 4 KKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYKKEL 63 Query: 248 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCIL 427 SSHRKKR +Q++K ++ G ++ ++ DPF LF+ ++I YC Y ++ ++LGNTFGMC+L Sbjct: 64 GFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNTFGMCVL 123 Query: 428 QDFEALTPNLLARTIET 478 QDFEALTPNLLART+ET Sbjct: 124 QDFEALTPNLLARTVET 140
>YDK9_SCHPO (P87115) Hypothetical UPF0202 protein C20G8.09c in chromosome I| Length = 1033 Score = 174 bits (440), Expect = 1e-43 Identities = 80/138 (57%), Positives = 111/138 (80%), Gaps = 1/138 (0%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247 K +D RI TLI+NG +++QRS F++VGD++RDQ+VNL+++L++S+V +RP+VLW Y+ L Sbjct: 4 KALDSRIPTLIKNGCQEKQRSFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYKKDL 63 Query: 248 -EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCI 424 +SHRKKR +IKK ++RG+ DP DPF LF ++I YC YK+SE++LG T+GM + Sbjct: 64 LGFTSHRKKRENKIKKEIKRGIRDPNSEDPFELFCSITNIRYCYYKESEKILGQTYGMLV 123 Query: 425 LQDFEALTPNLLARTIET 478 LQDFEALTPNLLARTIET Sbjct: 124 LQDFEALTPNLLARTIET 141
>YNN2_YEAST (P53914) Hypothetical UPF0202 protein YNL132w| Length = 1056 Score = 162 bits (409), Expect = 6e-40 Identities = 77/138 (55%), Positives = 105/138 (76%), Gaps = 1/138 (0%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247 K +D RI +LI NGV+ +QRS+F+IVGD++R+Q+ NL+Y++ + +K SVLW Y+ KL Sbjct: 4 KAIDSRIPSLIRNGVQTKQRSIFVIVGDRARNQLPNLHYLMMSADLKMNKSVLWAYKKKL 63 Query: 248 -EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCI 424 +SHRKKR +IKK ++RG + + DPF F+ +I Y YK+SE++LGNT+GMCI Sbjct: 64 LGFTSHRKKRENKIKKEIKRGTREVNEMDPFESFISNQNIRYVYYKESEKILGNTYGMCI 123 Query: 425 LQDFEALTPNLLARTIET 478 LQDFEALTPNLLARTIET Sbjct: 124 LQDFEALTPNLLARTIET 141
>YIL8_CAEEL (O01757) Hypothetical UPF0202 protein F55A12.8 in chromosome I| Length = 1043 Score = 160 bits (406), Expect = 1e-39 Identities = 76/136 (55%), Positives = 102/136 (75%) Frame = +2 Query: 71 KVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLE 250 K+D RIRT IENGV RSMF +VGDK+RDQ+ L ++L+KS V +RP+VLWCY+ +L Sbjct: 4 KLDGRIRTQIENGVASGHRSMFAVVGDKARDQVPILYHILSKSTVSARPNVLWCYKKELS 63 Query: 251 ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCILQ 430 S+HR K+AK++KK ADPF +F+ ++ I YC Y ++E++LGNTFG+ +LQ Sbjct: 64 FSTHRAKKAKKMKKATTTISGSLPDADPFDVFISSTQIRYCYYNETEKILGNTFGVLVLQ 123 Query: 431 DFEALTPNLLARTIET 478 DFEA+TPNLLARTIET Sbjct: 124 DFEAMTPNLLARTIET 139
>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)| Length = 1008 Score = 147 bits (370), Expect = 2e-35 Identities = 77/138 (55%), Positives = 100/138 (72%), Gaps = 1/138 (0%) Frame = +2 Query: 68 KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 247 KK+D RIR +IENGV+ R+MFI++GDK+RDQ+ L +L KS VK+RP+VLWCY+NK Sbjct: 4 KKIDNRIRVMIENGVKLGHRTMFIVIGDKARDQVPILYDILTKSTVKARPTVLWCYKNKD 63 Query: 248 E-ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTFGMCI 424 E IS+H KKRAK+I G +D +AD F F + I Y ++ VLG T+G+C+ Sbjct: 64 EAISNHGKKRAKKIAV----GKVDVNEADLFDSFRVATTIHGRYYSETHAVLGRTYGVCV 119 Query: 425 LQDFEALTPNLLARTIET 478 LQDFEALTPNLLART+ET Sbjct: 120 LQDFEALTPNLLARTVET 137
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 33.1 bits (74), Expect = 0.39 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 163 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 291 P P L P +A + L++PQQ + QQ QEE +Q Q+ Sbjct: 902 PQAIPTLQLQSAPSTIADPQQLMVPQQQQQQQHQEEQQQQPQQ 944
>CN102_HUMAN (Q9H7Z3) Protein C14orf102| Length = 1164 Score = 32.0 bits (71), Expect = 0.87 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Frame = +2 Query: 176 LNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLET 355 L Y +AK V+WC K + K + K KKL + L +PE + F L+ + Sbjct: 737 LQYEIAK--------VIWCLHTKNK--KRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQY 786 Query: 356 SDITYCM--YKDSERVLGNTFGM 418 + + + + +D+ +V GM Sbjct: 787 AHLEWLLGNTEDARKVFDTALGM 809
>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog| Length = 1172 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/86 (30%), Positives = 37/86 (43%) Frame = +2 Query: 152 KSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKAD 331 KS+ + L Y +AK V+WC K K + K KKL + L +PE + Sbjct: 738 KSQLSLSWLRYEIAK--------VIWCLHTK---KKRLKSQGKSCKKLAKNLLKEPENRN 786 Query: 332 PFSLFLETSDITYCMYKDSERVLGNT 409 F L+ + Y E +LGNT Sbjct: 787 NFCLWKQ--------YAHLEWLLGNT 804
>GPA12_CAEEL (Q19572) Guanine nucleotide-binding protein alpha-12 subunit| Length = 355 Score = 31.2 bits (69), Expect = 1.5 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = +2 Query: 101 ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKR 274 E+G + M II G+ + D++ + ++ + S VL RNKL I+ KR Sbjct: 39 ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97 Query: 275 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 388 +++K+M+ + D K F+ F+E + I + D+ Sbjct: 98 QVEVEKVMRFSVGDLLKGIDFTTFVEVAPIISDFWNDA 135
>DPOG1_MOUSE (P54099) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial| DNA polymerase catalytic subunit) (PolG-alpha) Length = 1239 Score = 31.2 bits (69), Expect = 1.5 Identities = 24/94 (25%), Positives = 42/94 (44%) Frame = +2 Query: 80 ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISS 259 ER T +N + QR M + D + D +L+ R K P W + + ++ Sbjct: 425 ERYLTEAQNTYEELQREMKKSLMDLANDAC----QLLSGERYKEDP---WLWDLEWDLQE 477 Query: 260 HRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 361 ++K+AK++KK + E A PF ++ D Sbjct: 478 FKQKKAKKVKKPASASKLPIEGAGPFGDPMDQED 511
>GPA12_CAEBR (Q613V4) Guanine nucleotide-binding protein alpha-12 subunit| Length = 355 Score = 30.4 bits (67), Expect = 2.5 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = +2 Query: 101 ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKR 274 E+G + M II G+ + D++ + ++ + S VL RNKL I+ KR Sbjct: 39 ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97 Query: 275 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 388 +++K+M+ + D K F+ F+E + I + D+ Sbjct: 98 QVEVEKVMRFTVGDLLKGIDFTTFVEVAPIISDFWNDA 135
>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)| Length = 508 Score = 29.6 bits (65), Expect = 4.3 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -1 Query: 372 Q*VMSEVSRKREKGSAFSGSMSPRCMSFLICLARFFLWLLISSL 241 Q +S + R+R+ MS +FLIC FFLW ++SSL Sbjct: 336 QSTISTMRRERKAARTLGIIMS----AFLICWLPFFLWYIVSSL 375
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +1 Query: 169 RQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 291 RQ Q Q P+Q+ + L PQQ + QQP ++ +Q+ ++ Sbjct: 30 RQQQPQQLQQPQQLQQPQQLQQPQQQQQQQPHQQQQQSSRQ 70
>LMBL3_MOUSE (Q8BLB7) Lethal(3)malignant brain tumor-like 3 protein| (L(3)mbt-like 3 protein) Length = 883 Score = 29.6 bits (65), Expect = 4.3 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 175 PQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAHAARA 309 P + Q P+QV ++ PQQA+ ++A+QA Q A +A Sbjct: 664 PSVQQSQPPQQVQQVQHAQPPQQAQKAPQAQQAQQAQQAQQAPQA 708
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = -3 Query: 475 LNGPGQKVGRQRLEVLQYAHAKRVAEDPLRVLVHAV 368 LN P +G+ E+LQ H +R A D LRVL+H V Sbjct: 952 LNSPSSLIGQALTEILQ--HPER-ARDALRVLLHLV 984
>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043| Length = 1716 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = -3 Query: 475 LNGPGQKVGRQRLEVLQYAHAKRVAEDPLRVLVHAV 368 LN P +G+ E+LQ H +R A D LRVL+H V Sbjct: 952 LNSPSSLIGQALTEILQ--HPER-ARDALRVLLHLV 984
>UVRB_FUSNN (Q8RGR2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 663 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/56 (30%), Positives = 33/56 (58%) Frame = +2 Query: 161 DQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKA 328 + ++NL+Y + + + ++ V +RNK +I K K+IKKL++ +D E+A Sbjct: 596 EDLINLDYGIEEKKFENDKKV---FRNKTDIEKEITKLEKKIKKLVEE--LDFEQA 646
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 28.9 bits (63), Expect = 7.3 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 163 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 288 P +QPQ Q P+Q PQQ QQPQ++ +Q Q Sbjct: 124 PQQQPQQQPQQQPQQQ--------PQQQPQQQPQQQPQQQPQ 157
>DPOG1_RAT (Q9QYV8) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial| DNA polymerase catalytic subunit) (PolG-alpha) Length = 1216 Score = 28.9 bits (63), Expect = 7.3 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Frame = +2 Query: 80 ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVN-LNYMLAKSRVKSRPSVLWCYRNKLEIS 256 ER T ++ + QR M KS ++ N +L+ R K P W + + ++ Sbjct: 424 ERYLTEAQSTYEELQREM-----KKSLMELANDACQLLSGERYKEDP---WLWDLEWDLQ 475 Query: 257 SHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 361 ++K+AK++KK + E A PF ++ D Sbjct: 476 EFKQKKAKKVKKTASASKLPIEGAGPFGDPMDQED 510
>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 760 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +1 Query: 163 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 288 P +QPQ GQ P+Q+ + PQQ QQPQ+ Q Q Sbjct: 658 PGQQPQQIPGQQPQQIPGQQ----PQQIPGQQPQQIPVQQPQ 695 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,657,213 Number of Sequences: 219361 Number of extensions: 701987 Number of successful extensions: 2963 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2948 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
