ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27a06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_481558.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 492 bits (248), Expect = e-136 Identities = 317/340 (93%) Strand = Plus / Plus Query: 85 gcatcttcgacggcctcccaattccgccagacaaatcttacctgaaggaagggctgtcgc 144 ||||||||||||||||||| || || | |||||||| ||||| ||||||||||| |||| Sbjct: 26 gcatcttcgacggcctccccatcccagccgacaaatcctacctcaaggaagggctctcgc 85 Query: 145 ggatcgacgagggatgggcagcggcgcggttcgactcgctgccgcacgtcgtgcacatcc 204 |||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 86 ggattgacgaggggtgggcggcggcgcgcttcgactcgctgccgcacgtcgtgcacatcc 145 Query: 205 tcacctccaaggaccgcgatggcgagatccagttcctcaaggagcagagcgacctcatcg 264 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 146 tcacctccaaggaccgcgagggcgagatccagttcctcaaggagcagagcgacctcatcg 205 Query: 265 aggacgtcgttgacgaggtcgtccacgcgtaccaccatggcttcaacaaggccatacaga 324 |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 206 aggacgtcgtcgacgaggtcgtccacgcctaccaccatggcttcaacaaggccatccaga 265 Query: 325 actactcccatatcctgcggctgttcagcgagtccgccgagagcatcaccggcctcaagg 384 |||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct: 266 actactcccagatcctgcggctgttcagcgagtctgcggagagcatcaccgggctcaagg 325 Query: 385 gggagatggcagaggccaaaaagctgcttgggaggaagaa 424 |||||||||| |||||||| || ||||||||||||||||| Sbjct: 326 gggagatggccgaggccaagaaactgcttgggaggaagaa 365
>dbj|AK070862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E23, full insert sequence Length = 3546 Score = 492 bits (248), Expect = e-136 Identities = 317/340 (93%) Strand = Plus / Plus Query: 85 gcatcttcgacggcctcccaattccgccagacaaatcttacctgaaggaagggctgtcgc 144 ||||||||||||||||||| || || | |||||||| ||||| ||||||||||| |||| Sbjct: 111 gcatcttcgacggcctccccatcccagccgacaaatcctacctcaaggaagggctctcgc 170 Query: 145 ggatcgacgagggatgggcagcggcgcggttcgactcgctgccgcacgtcgtgcacatcc 204 |||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 171 ggattgacgaggggtgggcggcggcgcgcttcgactcgctgccgcacgtcgtgcacatcc 230 Query: 205 tcacctccaaggaccgcgatggcgagatccagttcctcaaggagcagagcgacctcatcg 264 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tcacctccaaggaccgcgagggcgagatccagttcctcaaggagcagagcgacctcatcg 290 Query: 265 aggacgtcgttgacgaggtcgtccacgcgtaccaccatggcttcaacaaggccatacaga 324 |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 291 aggacgtcgtcgacgaggtcgtccacgcctaccaccatggcttcaacaaggccatccaga 350 Query: 325 actactcccatatcctgcggctgttcagcgagtccgccgagagcatcaccggcctcaagg 384 |||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct: 351 actactcccagatcctgcggctgttcagcgagtctgcggagagcatcaccgggctcaagg 410 Query: 385 gggagatggcagaggccaaaaagctgcttgggaggaagaa 424 |||||||||| |||||||| || ||||||||||||||||| Sbjct: 411 gggagatggccgaggccaagaaactgcttgggaggaagaa 450
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 341 bits (172), Expect = 1e-90 Identities = 202/212 (95%) Strand = Plus / Minus Query: 123 tacctgaaggaagggctgtcgcggatcgacgagggatgggcagcggcgcggttcgactcg 182 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| Sbjct: 13758055 tacctcaaggaagggctctcgcggattgacgaggggtgggcggcggcgcgcttcgactcg 13757996 Query: 183 ctgccgcacgtcgtgcacatcctcacctccaaggaccgcgatggcgagatccagttcctc 242 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 13757995 ctgccgcacgtcgtgcacatcctcacctccaaggaccgcgagggcgagatccagttcctc 13757936 Query: 243 aaggagcagagcgacctcatcgaggacgtcgttgacgaggtcgtccacgcgtaccaccat 302 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 13757935 aaggagcagagcgacctcatcgaggacgtcgtcgacgaggtcgtccacgcctaccaccat 13757876 Query: 303 ggcttcaacaaggccatacagaactactccca 334 ||||||||||||||||| |||||||||||||| Sbjct: 13757875 ggcttcaacaaggccatccagaactactccca 13757844 Score = 129 bits (65), Expect = 8e-27 Identities = 83/89 (93%) Strand = Plus / Minus Query: 336 atcctgcggctgttcagcgagtccgccgagagcatcaccggcctcaagggggagatggca 395 ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct: 13757719 atcctgcggctgttcagcgagtctgcggagagcatcaccgggctcaagggggagatggcc 13757660 Query: 396 gaggccaaaaagctgcttgggaggaagaa 424 |||||||| || ||||||||||||||||| Sbjct: 13757659 gaggccaagaaactgcttgggaggaagaa 13757631
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0406D01 Length = 163932 Score = 341 bits (172), Expect = 1e-90 Identities = 202/212 (95%) Strand = Plus / Minus Query: 123 tacctgaaggaagggctgtcgcggatcgacgagggatgggcagcggcgcggttcgactcg 182 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| Sbjct: 72124 tacctcaaggaagggctctcgcggattgacgaggggtgggcggcggcgcgcttcgactcg 72065 Query: 183 ctgccgcacgtcgtgcacatcctcacctccaaggaccgcgatggcgagatccagttcctc 242 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 72064 ctgccgcacgtcgtgcacatcctcacctccaaggaccgcgagggcgagatccagttcctc 72005 Query: 243 aaggagcagagcgacctcatcgaggacgtcgttgacgaggtcgtccacgcgtaccaccat 302 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 72004 aaggagcagagcgacctcatcgaggacgtcgtcgacgaggtcgtccacgcctaccaccat 71945 Query: 303 ggcttcaacaaggccatacagaactactccca 334 ||||||||||||||||| |||||||||||||| Sbjct: 71944 ggcttcaacaaggccatccagaactactccca 71913 Score = 129 bits (65), Expect = 8e-27 Identities = 83/89 (93%) Strand = Plus / Minus Query: 336 atcctgcggctgttcagcgagtccgccgagagcatcaccggcctcaagggggagatggca 395 ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct: 71788 atcctgcggctgttcagcgagtctgcggagagcatcaccgggctcaagggggagatggcc 71729 Query: 396 gaggccaaaaagctgcttgggaggaagaa 424 |||||||| || ||||||||||||||||| Sbjct: 71728 gaggccaagaaactgcttgggaggaagaa 71700
>ref|XM_847737.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 3 (LOC490734), mRNA Length = 7482 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>ref|XM_547856.2| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 1 (LOC490734), mRNA Length = 6473 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>ref|XM_861283.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 10 (LOC490734), mRNA Length = 7497 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>ref|XM_861267.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 9 (LOC490734), mRNA Length = 7587 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>ref|XM_861254.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 8 (LOC490734), mRNA Length = 7488 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>ref|XM_861243.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 7 (LOC490734), mRNA Length = 7494 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>ref|XM_861231.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 6 (LOC490734), mRNA Length = 7434 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>ref|XM_861213.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 5 (LOC490734), mRNA Length = 7692 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 430 tccagttcctcaaggagcagag 451
>ref|XM_861197.1| PREDICTED: Canis familiaris similar to spectrin beta isoform a, transcript variant 4 (LOC490734), mRNA Length = 3721 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcagag 253 |||||||||||||||||||||| Sbjct: 415 tccagttcctcaaggagcagag 436
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 cgaggacgtcgttgacgaggtcgtc 287 |||||||||||| |||||||||||| Sbjct: 4874049 cgaggacgtcgtggacgaggtcgtc 4874025
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 242 caaggagcagagcgacctcatcgaggacg 270 |||||||||| ||| |||||||||||||| Sbjct: 1077901 caaggagcagcgcgccctcatcgaggacg 1077929
>gb|AF108008.1|AF108008 Hordeum vulgare HV1LRR1 (HV1LRR1) gene, complete cds Length = 5163 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 atcgaggacgtcgttgacgag 281 ||||||||||||||||||||| Sbjct: 511 atcgaggacgtcgttgacgag 531
>ref|XM_510006.1| PREDICTED: Pan troglodytes similar to muscle beta spectrin (LOC452970), mRNA Length = 7365 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 494 tccagttcctcaaggagcag 513
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 ctcacctccaaggaccgcgatggc 227 |||||||||| ||||||||||||| Sbjct: 2008732 ctcacctccatggaccgcgatggc 2008755
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 aaggagcagagcgacctcatcgag 266 |||||||||||||||| ||||||| Sbjct: 1104154 aaggagcagagcgaccgcatcgag 1104177
>ref|NM_001024858.1| Homo sapiens spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) (SPTB), transcript variant 1, mRNA Length = 10064 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 413 tccagttcctcaaggagcag 432
>ref|NM_000347.4| Homo sapiens spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) (SPTB), transcript variant 2, mRNA Length = 6695 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 413 tccagttcctcaaggagcag 432
>gb|AC127367.4| Mus musculus BAC clone RP23-19G15 from chromosome 9, complete sequence Length = 176541 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 agacaaatcttacctgaaggaagg 136 ||||| |||||||||||||||||| Sbjct: 172864 agacacatcttacctgaaggaagg 172841
>gb|AC162914.2| Mus musculus BAC clone RP23-401O13 from chromosome 6, complete sequence Length = 194892 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 377 cctcaagggggagatggcagaggccaaa 404 ||||||||||||||| || ||||||||| Sbjct: 21805 cctcaagggggagatagctgaggccaaa 21778
>gb|AC140074.2| Mus musculus BAC clone RP23-141A5 from chromosome 8, complete sequence Length = 190381 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 agctgcttgggaggaagaat 425 |||||||||||||||||||| Sbjct: 175530 agctgcttgggaggaagaat 175549
>gb|AC123815.3| Mus musculus BAC clone RP24-238O19 from chromosome 9, complete sequence Length = 136592 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 agacaaatcttacctgaaggaagg 136 ||||| |||||||||||||||||| Sbjct: 63560 agacacatcttacctgaaggaagg 63537
>gb|AC124584.5| Mus musculus BAC clone RP23-127B8 from chromosome 8, complete sequence Length = 193083 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 agctgcttgggaggaagaat 425 |||||||||||||||||||| Sbjct: 137153 agctgcttgggaggaagaat 137172
>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence Length = 230218 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 377 cctcaagggggagatggcagaggccaaa 404 ||||||||||||||| || ||||||||| Sbjct: 117851 cctcaagggggagatagctgaggccaaa 117878
>gb|AC124713.5| Mus musculus BAC clone RP24-116N2 from chromosome 8, complete sequence Length = 184855 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 agctgcttgggaggaagaat 425 |||||||||||||||||||| Sbjct: 182427 agctgcttgggaggaagaat 182408
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgtcgttgacgaggtcgtcc 288 |||||||||||||||||||| Sbjct: 232835 cgtcgttgacgaggtcgtcc 232816
>gb|AC105101.8| Homo sapiens chromosome 18, clone RP11-246E12, complete sequence Length = 172626 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 108238 tccagttcctcaaggagcag 108257
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 taccaccatggcttcaacaa 313 |||||||||||||||||||| Sbjct: 3021626 taccaccatggcttcaacaa 3021607
>dbj|AB243008.1| Nocardia sp. Hou_blue gyrB gene for DNA gyrase B, partial cds Length = 1257 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 gaggacgtcgttgacgaggtcgtc 287 ||||||||||| |||||||||||| Sbjct: 316 gaggacgtcgtcgacgaggtcgtc 339
>emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in linkage group 12, complete sequence Length = 171920 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gggagatggcagaggccaaa 404 |||||||||||||||||||| Sbjct: 97266 gggagatggcagaggccaaa 97247
>gb|AE009637.1| Brucella melitensis 16M chromosome I, section 194 of 195 of the complete sequence Length = 10552 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 ctcacctccaaggaccgcgatggc 227 |||||||||| ||||||||||||| Sbjct: 351 ctcacctccatggaccgcgatggc 328
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ccatggcttcaacaaggcca 318 |||||||||||||||||||| Sbjct: 3095312 ccatggcttcaacaaggcca 3095293
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 ctcacctccaaggaccgcgatggc 227 |||||||||| ||||||||||||| Sbjct: 2025391 ctcacctccatggaccgcgatggc 2025414
>emb|AL121774.5|CNS01DSF Human chromosome 14 DNA sequence BAC R-430G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171030 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 30244 tccagttcctcaaggagcag 30263
>gb|AC109198.9| Mus musculus chromosome 15, clone RP23-31G10, complete sequence Length = 207069 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cttcaacaaggccatacaga 324 |||||||||||||||||||| Sbjct: 184976 cttcaacaaggccatacaga 184957
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 gagcagagcgacctcatcgaggacgtcg 273 |||||||||| | ||||||||||||||| Sbjct: 62180 gagcagagcggcttcatcgaggacgtcg 62153
>gb|AC147440.4| Gallus gallus BAC clone CH261-49N7 from chromosome unknown, complete sequence Length = 192621 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ggccaaaaagctgcttggga 417 |||||||||||||||||||| Sbjct: 94167 ggccaaaaagctgcttggga 94186
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 ctcacctccaaggaccgcgatggc 227 |||||||||| ||||||||||||| Sbjct: 2022510 ctcacctccatggaccgcgatggc 2022533
>dbj|AB209415.1| Homo sapiens mRNA for spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) variant protein Length = 7481 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 502 tccagttcctcaaggagcag 521
>emb|AL135745.5|CNS01DVD Human chromosome 14 DNA sequence BAC C-2300N4 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 118332 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 114819 tccagttcctcaaggagcag 114838
>gb|J05500.1|HUMSPTB Human beta-spectrin (SPTB) mRNA, complete cds Length = 6765 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 454 tccagttcctcaaggagcag 473
>gb|U00910.1|HSU00910 Human beta-spectrin (HSPTB1) gene, Humbspec.4 exon sequence Length = 348 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tccagttcctcaaggagcag 251 |||||||||||||||||||| Sbjct: 125 tccagttcctcaaggagcag 144 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,233,479 Number of Sequences: 3902068 Number of extensions: 3233479 Number of successful extensions: 69183 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68778 Number of HSP's gapped (non-prelim): 405 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
