>ref|XM_483324.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3423

 Score =  153 bits (77), Expect = 6e-34
 Identities = 131/149 (87%)
 Strand = Plus / Plus

                                                                       
Query: 310 ggcgggagctatcccatgtgccaggtggatgactgccgcgcggatctcaccagcgccaag 369
           ||||| ||||| || ||||||||||||||||||||| | |||||||| |||| |||||||
Sbjct: 541 ggcggaagctacccgatgtgccaggtggatgactgcagggcggatctgaccaacgccaag 600

                                                                       
Query: 370 gattatcaccggaggcacaaggtgtgtgagatccacagcaagacaaccaaggcggtagtt 429
           |||||||||||||| ||||| || || ||||||||| ||||||| || |||||| | |||
Sbjct: 601 gattatcaccggagacacaaagtctgcgagatccacggcaagaccacgaaggcgctggtt 660

                                        
Query: 430 gccaaccagatgcagcgcttctgccagca 458
           | ||||||||||||||||||||| |||||
Sbjct: 661 ggcaaccagatgcagcgcttctgtcagca 689

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  153 bits (77), Expect = 6e-34
 Identities = 131/149 (87%)
 Strand = Plus / Plus

                                                                            
Query: 310      ggcgggagctatcccatgtgccaggtggatgactgccgcgcggatctcaccagcgccaag 369
                ||||| ||||| || ||||||||||||||||||||| | |||||||| |||| |||||||
Sbjct: 25475759 ggcggaagctacccgatgtgccaggtggatgactgcagggcggatctgaccaacgccaag 25475818

                                                                            
Query: 370      gattatcaccggaggcacaaggtgtgtgagatccacagcaagacaaccaaggcggtagtt 429
                |||||||||||||| ||||| || || ||||||||| ||||||| || |||||| | |||
Sbjct: 25475819 gattatcaccggagacacaaagtctgcgagatccacggcaagaccacgaaggcgctggtt 25475878

                                             
Query: 430      gccaaccagatgcagcgcttctgccagca 458
                | ||||||||||||||||||||| |||||
Sbjct: 25475879 ggcaaccagatgcagcgcttctgtcagca 25475907

>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0711H09
          Length = 185858

 Score =  153 bits (77), Expect = 6e-34
 Identities = 131/149 (87%)
 Strand = Plus / Plus

                                                                          
Query: 310    ggcgggagctatcccatgtgccaggtggatgactgccgcgcggatctcaccagcgccaag 369
              ||||| ||||| || ||||||||||||||||||||| | |||||||| |||| |||||||
Sbjct: 107075 ggcggaagctacccgatgtgccaggtggatgactgcagggcggatctgaccaacgccaag 107134

                                                                          
Query: 370    gattatcaccggaggcacaaggtgtgtgagatccacagcaagacaaccaaggcggtagtt 429
              |||||||||||||| ||||| || || ||||||||| ||||||| || |||||| | |||
Sbjct: 107135 gattatcaccggagacacaaagtctgcgagatccacggcaagaccacgaaggcgctggtt 107194

                                           
Query: 430    gccaaccagatgcagcgcttctgccagca 458
              | ||||||||||||||||||||| |||||
Sbjct: 107195 ggcaaccagatgcagcgcttctgtcagca 107223

>gb|L34039.1|RICRMSOA Oryza sativa manganese superoxide dismutase (rmsod2) mRNA, complete
           cds
          Length = 1352

 Score =  153 bits (77), Expect = 6e-34
 Identities = 131/149 (87%)
 Strand = Plus / Minus

                                                                       
Query: 310 ggcgggagctatcccatgtgccaggtggatgactgccgcgcggatctcaccagcgccaag 369
           ||||| ||||| || ||||||||||||||||||||| | |||||||| |||| |||||||
Sbjct: 446 ggcggaagctacccgatgtgccaggtggatgactgcagggcggatctgaccaacgccaag 387

                                                                       
Query: 370 gattatcaccggaggcacaaggtgtgtgagatccacagcaagacaaccaaggcggtagtt 429
           |||||||||||||| ||||| || || ||||||||| ||||||| || |||||| | |||
Sbjct: 386 gattatcaccggagacacaaagtctgcgagatccacggcaagaccacgaaggcgctggtt 327

                                        
Query: 430 gccaaccagatgcagcgcttctgccagca 458
           | ||||||||||||||||||||| |||||
Sbjct: 326 ggcaaccagatgcagcgcttctgtcagca 298

>gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from chromosome unknown,
             complete sequence
          Length = 188107

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 18    gtctcccccgaccccctccctcacccctca 47
             ||||| || |||||||||||||||||||||
Sbjct: 35285 gtctctcctgaccccctccctcacccctca 35256

>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     ctcgccagcgccgcgctctcg 73
              |||||||||||||||||||||
Sbjct: 171946 ctcgccagcgccgcgctctcg 171926

>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     ctctcgccagcgccgcgctct 71
              |||||||||||||||||||||
Sbjct: 321065 ctctcgccagcgccgcgctct 321045

>ref|XM_472697.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2577

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ccgcgggggcgagatgaggt 157
            ||||||||||||||||||||
Sbjct: 1215 ccgcgggggcgagatgaggt 1196

>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ctcccccgaccccctccctc 39
              ||||||||||||||||||||
Sbjct: 103530 ctcccccgaccccctccctc 103549

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 255     gtcggcgatcgtcggttttgatcc 278
               |||||||||||||| |||||||||
Sbjct: 2906136 gtcggcgatcgtcgcttttgatcc 2906113

>gb|AY277973.1| Takifugu rubripes transcription factor Sox5 (Sox5) gene, complete cds
          Length = 61929

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ccgaccccctccctcacccc 44
             ||||||||||||||||||||
Sbjct: 47581 ccgaccccctccctcacccc 47562

>gb|AC127331.4| Mus musculus BAC clone RP23-127A19 from 18, complete sequence
          Length = 179177

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 388    aaggtgtgtgagatccacagcaagacaa 415
              |||||||||||||||| |||||| ||||
Sbjct: 104179 aaggtgtgtgagatccgcagcaacacaa 104206

>gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosome 13, complete sequence
          Length = 151819

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     cccccgaccccctccctcac 41
              ||||||||||||||||||||
Sbjct: 150991 cccccgaccccctccctcac 151010

>gb|AC116320.5| Mus musculus chromosome 18 clone RP23-269B16, complete sequence
          Length = 195630

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 388    aaggtgtgtgagatccacagcaagacaa 415
              |||||||||||||||| |||||| ||||
Sbjct: 187629 aaggtgtgtgagatccgcagcaacacaa 187656

>gb|AC154620.2| Mus musculus BAC clone RP23-323M20 from chromosome 13, complete
             sequence
          Length = 193801

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    cccccgaccccctccctcac 41
             ||||||||||||||||||||
Sbjct: 16669 cccccgaccccctccctcac 16688

>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07,
             complete sequence
          Length = 179021

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ccgcgggggcgagatgaggt 157
             ||||||||||||||||||||
Sbjct: 77206 ccgcgggggcgagatgaggt 77187

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 138      ccgcgggggcgagatgaggt 157
                ||||||||||||||||||||
Sbjct: 22635106 ccgcgggggcgagatgaggt 22635087

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 20       ctcccccgaccccctccctc 39
                ||||||||||||||||||||
Sbjct: 11510258 ctcccccgaccccctccctc 11510239

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 376      caccggaggcacaaggtgtgtgag 399
                |||||| |||||||||||||||||
Sbjct: 16738461 caccggtggcacaaggtgtgtgag 16738438

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 376      caccggaggcacaaggtgtgtgag 399
                |||||| |||||||||||||||||
Sbjct: 20472336 caccggtggcacaaggtgtgtgag 20472359

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 295     gggagcgcaagcggaggcgggagc 318
               ||||||| ||||||||||||||||
Sbjct: 4322189 gggagcgtaagcggaggcgggagc 4322166



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 106     gctgctgcccacgccccgcg 125
               ||||||||||||||||||||
Sbjct: 2332617 gctgctgcccacgccccgcg 2332598

>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0047B10
          Length = 158798

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 376   caccggaggcacaaggtgtgtgag 399
             |||||| |||||||||||||||||
Sbjct: 87155 caccggtggcacaaggtgtgtgag 87132

>dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0069D13
          Length = 157088

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    caccggaggcacaaggtgtgtgag 399
              |||||| |||||||||||||||||
Sbjct: 114760 caccggtggcacaaggtgtgtgag 114783

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 67      gctctcgcgtcccgcccgcc 86
               ||||||||||||||||||||
Sbjct: 3705536 gctctcgcgtcccgcccgcc 3705517

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 20       ctcccccgaccccctccctc 39
                ||||||||||||||||||||
Sbjct: 11589447 ctcccccgaccccctccctc 11589428

>dbj|AP006076.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19M07, TM0114,
             complete sequence
          Length = 94533

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 376   caccggaggcacaaggtgtgtgag 399
             |||||| |||||||||||||||||
Sbjct: 45324 caccggcggcacaaggtgtgtgag 45347

>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence
          Length = 237824

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ccccctccctcacccctcac 48
             ||||||||||||||||||||
Sbjct: 27616 ccccctccctcacccctcac 27597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,531,810
Number of Sequences: 3902068
Number of extensions: 2531810
Number of successful extensions: 51374
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50918
Number of HSP's gapped (non-prelim): 456
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)