Clone Name | bastl27a01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468998.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2706 Score = 65.9 bits (33), Expect = 8e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 42 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 101 Query: 332 cgaggacgg 340 ||||||||| Sbjct: 102 cgaggacgg 110
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 8e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 24304453 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24304512 Query: 332 cgaggacgg 340 ||||||||| Sbjct: 24304513 cgaggacgg 24304521
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence Length = 171664 Score = 65.9 bits (33), Expect = 8e-08 Identities = 60/69 (86%) Strand = Plus / Minus Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 76171 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 76112 Query: 332 cgaggacgg 340 ||||||||| Sbjct: 76111 cgaggacgg 76103
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 8e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 24221922 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24221981 Query: 332 cgaggacgg 340 ||||||||| Sbjct: 24221982 cgaggacgg 24221990
>dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J17, full insert sequence Length = 3772 Score = 65.9 bits (33), Expect = 8e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 718 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 777 Query: 332 cgaggacgg 340 ||||||||| Sbjct: 778 cgaggacgg 786
>dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds Length = 3859 Score = 65.9 bits (33), Expect = 8e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 846 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 905 Query: 332 cgaggacgg 340 ||||||||| Sbjct: 906 cgaggacgg 914
>ref|XM_747609.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g13320) partial mRNA Length = 1131 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tatggcctcggctccatggg 310 |||||||||||||||||||| Sbjct: 199 tatggcctcggctccatggg 218
>gb|AC091744.5| Homo sapiens BAC clone RP11-372I24 from 7, complete sequence Length = 23032 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ctcctctccgcactgccctc 105 |||||||||||||||||||| Sbjct: 10046 ctcctctccgcactgccctc 10027
>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3 Length = 348551 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tatggcctcggctccatggg 310 |||||||||||||||||||| Sbjct: 243684 tatggcctcggctccatggg 243665
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 tcctctccgcactgccctccctcg 110 |||||||| ||||||||||||||| Sbjct: 157553 tcctctcctcactgccctccctcg 157576
>gb|AC011648.12| Homo sapiens chromosome 15, clone RP11-15F13, complete sequence Length = 107336 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 tcctctccgcactgccctccctcg 110 |||||||| ||||||||||||||| Sbjct: 98945 tcctctcctcactgccctccctcg 98922 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,712,612 Number of Sequences: 3902068 Number of extensions: 1712612 Number of successful extensions: 29592 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29554 Number of HSP's gapped (non-prelim): 38 length of query: 340 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 318 effective length of database: 17,147,199,772 effective search space: 5452809527496 effective search space used: 5452809527496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)