ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468998.1| Oryza sativa (japonica cultivar-group), mRNA 66 8e-08
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 8e-08
3gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genom... 66 8e-08
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
5dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
6dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds 66 8e-08
7ref|XM_747609.1| Aspergillus fumigatus Af293 hypothetical protei... 40 4.5
8gb|AC091744.5| Homo sapiens BAC clone RP11-372I24 from 7, comple... 40 4.5
9emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercon... 40 4.5
10gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, co... 40 4.5
11gb|AC011648.12| Homo sapiens chromosome 15, clone RP11-15F13, co... 40 4.5

>ref|XM_468998.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2706

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331
           |||||| || || |||||||||||||| || |||||||  |||||| | |||||||||||
Sbjct: 42  cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 101

                    
Query: 332 cgaggacgg 340
           |||||||||
Sbjct: 102 cgaggacgg 110



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 272      cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331
                |||||| || || |||||||||||||| || |||||||  |||||| | |||||||||||
Sbjct: 24304453 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24304512

                         
Query: 332      cgaggacgg 340
                |||||||||
Sbjct: 24304513 cgaggacgg 24304521



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>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete
             sequence
          Length = 171664

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 272   cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331
             |||||| || || |||||||||||||| || |||||||  |||||| | |||||||||||
Sbjct: 76171 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 76112

                      
Query: 332   cgaggacgg 340
             |||||||||
Sbjct: 76111 cgaggacgg 76103



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 272      cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331
                |||||| || || |||||||||||||| || |||||||  |||||| | |||||||||||
Sbjct: 24221922 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24221981

                         
Query: 332      cgaggacgg 340
                |||||||||
Sbjct: 24221982 cgaggacgg 24221990



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>dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J17, full
           insert sequence
          Length = 3772

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331
           |||||| || || |||||||||||||| || |||||||  |||||| | |||||||||||
Sbjct: 718 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 777

                    
Query: 332 cgaggacgg 340
           |||||||||
Sbjct: 778 cgaggacgg 786



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>dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds
          Length = 3859

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 331
           |||||| || || |||||||||||||| || |||||||  |||||| | |||||||||||
Sbjct: 846 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 905

                    
Query: 332 cgaggacgg 340
           |||||||||
Sbjct: 906 cgaggacgg 914



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>ref|XM_747609.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g13320)
           partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 tatggcctcggctccatggg 310
           ||||||||||||||||||||
Sbjct: 199 tatggcctcggctccatggg 218



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>gb|AC091744.5| Homo sapiens BAC clone RP11-372I24 from 7, complete sequence
          Length = 23032

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ctcctctccgcactgccctc 105
             ||||||||||||||||||||
Sbjct: 10046 ctcctctccgcactgccctc 10027



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>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3
          Length = 348551

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    tatggcctcggctccatggg 310
              ||||||||||||||||||||
Sbjct: 243684 tatggcctcggctccatggg 243665



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>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence
          Length = 175472

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 87     tcctctccgcactgccctccctcg 110
              |||||||| |||||||||||||||
Sbjct: 157553 tcctctcctcactgccctccctcg 157576



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>gb|AC011648.12| Homo sapiens chromosome 15, clone RP11-15F13, complete sequence
          Length = 107336

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    tcctctccgcactgccctccctcg 110
             |||||||| |||||||||||||||
Sbjct: 98945 tcctctcctcactgccctccctcg 98922


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,712,612
Number of Sequences: 3902068
Number of extensions: 1712612
Number of successful extensions: 29592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29554
Number of HSP's gapped (non-prelim): 38
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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