ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26h10 |
|---|---|
| Clone Library Name | barley_pub |
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 30.4 bits (67), Expect = 1.2 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +1 Query: 193 MATNRGMVAGSHKRDEFVMIRNDGDAPAPGKEV 291 M + G+VAGSH R+E V+I N + P P K + Sbjct: 1 MEASAGLVAGSHNRNELVVIHNH-EEPKPLKNL 32
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = +1 Query: 193 MATNRGMVAGSHKRDEFVMIRNDGD 267 M + G+VAGS++R+E V IR++ D Sbjct: 1 MEASAGLVAGSYRRNELVRIRHESD 25
>MA1A1_PIG (O02773) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (EC| 3.2.1.113) (Processing alpha-1,2-mannosidase IA) (Alpha-1,2-mannosidase IA) (Mannosidase alpha class 1A member 1) (Man(9)-alpha-mannosidase) (Man9-mannosidase) Length = 659 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -2 Query: 207 PVGGHLPAFTRPTGGGL 157 PVGG LP F+ P GGGL Sbjct: 2 PVGGLLPLFSSPAGGGL 18
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 193 MATNRGMVAGSHKRDEFVMIRNDGDA 270 M T ++AGSH R+EFV+I D +A Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADENA 26
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 193 MATNRGMVAGSHKRDEFVMIRNDGDA 270 M T ++AGSH R+EFV+I D A Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADESA 26
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 193 MATNRGMVAGSHKRDEFVMIRNDGDA 270 M T ++AGSH R+EFV+I D A Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADDTA 26
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 193 MATNRGMVAGSHKRDEFVMIRNDGDA 270 M T ++AGSH R+EFV+I D A Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADESA 26
>MA1A1_MOUSE (P45700) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (EC| 3.2.1.113) (Processing alpha-1,2-mannosidase IA) (Alpha-1,2-mannosidase IA) (Mannosidase alpha class 1A member 1) (Man(9)-alpha-mannosidase) (Man9-mannosidase) Length = 655 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -2 Query: 207 PVGGHLPAFTRPTGGGL 157 PVGG LP F+ P GGGL Sbjct: 2 PVGGLLPLFSSPGGGGL 18
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 128 PVPLSTEASERPPPVGRVKAGRWPPTGGWSPGRT 229 P+P + + RPPP +G WPP PGRT Sbjct: 276 PMPPTPGMTPRPPPPP--SSGMWPPPPPPPPGRT 307
>CF015_HUMAN (Q6UXA7) Protein C6orf15 precursor (STG protein)| Length = 325 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 125 LPVPLSTEASERPPPVGRVKAGRWPPTGG 211 +P+ LS S+ PP G RWPP+ G Sbjct: 75 VPLKLSVPPSDGFPPAGGSAVQRWPPSWG 103
>UBP2_ARATH (Q8W4N3) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) (AtUBP2) Length = 961 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 125 LPVPLSTEASERPPPVGRVKAGRWPP 202 LPVP ++P PV R K + PP Sbjct: 383 LPVPFKKSPPKKPQPVSRAKKAKLPP 408
>PTP61_DROME (Q9W0G1) Tyrosine-protein phosphatase non-receptor type 61F (EC| 3.1.3.48) (dPTP61F) Length = 548 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 Query: 252 DHDELVAFVRPGDHPPVGGHLPAFTRP 172 D DE + D PV GH+PA T+P Sbjct: 421 DEDEEYETINEHDADPVNGHVPATTQP 447
>Y6023_STRCO (O69853) Exopolysaccharide phosphotransferase SCO6023 (EC 2.7.-.-)| (Stealth protein SCO6023) Length = 586 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 291 HLLTRGGRVAVVADHDELVAFVRPGDHP 208 HL G R+A +A H + +A VRP P Sbjct: 67 HLFREGERLAALAGHGDRIALVRPTVSP 94
>HBL1_CAEEL (Q9XYD3) Hunchback-like protein| Length = 982 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +2 Query: 125 LPVPLSTEASERPPPVGRVKAGRWPPTGGWSPGRTN 232 +PV LS S+ P + WPPTG W N Sbjct: 23 MPVQLSNFVSKTP-----LIGSEWPPTGDWRSANNN 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,575,136 Number of Sequences: 219361 Number of extensions: 507993 Number of successful extensions: 1804 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1800 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
