ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26h07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189401.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3774 Score = 143 bits (72), Expect = 6e-31 Identities = 159/188 (84%) Strand = Plus / Plus Query: 227 ttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccggc 286 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 19 ttcagattctgcattgacaggggcggcacattcaccgacatctacgcagaggtgcccggg 78 Query: 287 gagccggaaggctatgttatgaagctcctctccgtcgacccgtccaactacgacgatgct 346 | ||||||||| || ||||| || ||||||||||||||||| ||||||||||| || Sbjct: 79 aggagggaaggctacgtgatgaaacttctctccgtcgacccgtcgaactacgacgacgcc 138 Query: 347 ccgatcgaggggatcaggaggattctagagcagttttctggtgaaagaatcccccggtcg 406 || ||||| |||||||||||||| || || |||| || || || || ||||| |||||| Sbjct: 139 cccatcgaagggatcaggaggatcctccaggagttctccggggagaggatcccgcggtcg 198 Query: 407 tccaagat 414 |||||||| Sbjct: 199 tccaagat 206
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 143 bits (72), Expect = 6e-31 Identities = 159/188 (84%) Strand = Plus / Minus Query: 227 ttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccggc 286 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 42589762 ttcagattctgcattgacaggggcggcacattcaccgacatctacgcagaggtgcccggg 42589703 Query: 287 gagccggaaggctatgttatgaagctcctctccgtcgacccgtccaactacgacgatgct 346 | ||||||||| || ||||| || ||||||||||||||||| ||||||||||| || Sbjct: 42589702 aggagggaaggctacgtgatgaaacttctctccgtcgacccgtcgaactacgacgacgcc 42589643 Query: 347 ccgatcgaggggatcaggaggattctagagcagttttctggtgaaagaatcccccggtcg 406 || ||||| |||||||||||||| || || |||| || || || || ||||| |||||| Sbjct: 42589642 cccatcgaagggatcaggaggatcctccaggagttctccggggagaggatcccgcggtcg 42589583 Query: 407 tccaagat 414 |||||||| Sbjct: 42589582 tccaagat 42589575 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 305 atgaagctcctctccgtcgacccgtccaactacgacgatgctccgatcgaggggatcagg 364 |||||||| |||||||| ||||||| ||||||||||| | || ||||| ||||||||| Sbjct: 42590935 atgaagcttctctccgttgacccgttgaactacgacgacacccccatcgaagggatcagg 42590876 Query: 365 aggattctagagcagttttctggtgaaagaatcccccggtcgtccaagat 414 | ||| || ||| |||| || || || || ||| |||||||||||||| Sbjct: 42590875 aagatcctcgaggagttgtccggggagaggatcatgcggtcgtccaagat 42590826
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 143 bits (72), Expect = 6e-31 Identities = 159/188 (84%) Strand = Plus / Minus Query: 227 ttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccggc 286 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 110645 ttcagattctgcattgacaggggcggcacattcaccgacatctacgcagaggtgcccggg 110586 Query: 287 gagccggaaggctatgttatgaagctcctctccgtcgacccgtccaactacgacgatgct 346 | ||||||||| || ||||| || ||||||||||||||||| ||||||||||| || Sbjct: 110585 aggagggaaggctacgtgatgaaacttctctccgtcgacccgtcgaactacgacgacgcc 110526 Query: 347 ccgatcgaggggatcaggaggattctagagcagttttctggtgaaagaatcccccggtcg 406 || ||||| |||||||||||||| || || |||| || || || || ||||| |||||| Sbjct: 110525 cccatcgaagggatcaggaggatcctccaggagttctccggggagaggatcccgcggtcg 110466 Query: 407 tccaagat 414 |||||||| Sbjct: 110465 tccaagat 110458 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 305 atgaagctcctctccgtcgacccgtccaactacgacgatgctccgatcgaggggatcagg 364 |||||||| |||||||| ||||||| ||||||||||| | || ||||| ||||||||| Sbjct: 111818 atgaagcttctctccgttgacccgttgaactacgacgacacccccatcgaagggatcagg 111759 Query: 365 aggattctagagcagttttctggtgaaagaatcccccggtcgtccaagat 414 | ||| || ||| |||| || || || || ||| |||||||||||||| Sbjct: 111758 aagatcctcgaggagttgtccggggagaggatcatgcggtcgtccaagat 111709
>dbj|AK120106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023K07, full insert sequence Length = 5354 Score = 143 bits (72), Expect = 6e-31 Identities = 159/188 (84%) Strand = Plus / Plus Query: 227 ttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccggc 286 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 250 ttcagattctgcattgacaggggcggcacattcaccgacatctacgcagaggtgcccggg 309 Query: 287 gagccggaaggctatgttatgaagctcctctccgtcgacccgtccaactacgacgatgct 346 | ||||||||| || ||||| || ||||||||||||||||| ||||||||||| || Sbjct: 310 aggagggaaggctacgtgatgaaacttctctccgtcgacccgtcgaactacgacgacgcc 369 Query: 347 ccgatcgaggggatcaggaggattctagagcagttttctggtgaaagaatcccccggtcg 406 || ||||| |||||||||||||| || || |||| || || || || ||||| |||||| Sbjct: 370 cccatcgaagggatcaggaggatcctccaggagttctccggggagaggatcccgcggtcg 429 Query: 407 tccaagat 414 |||||||| Sbjct: 430 tccaagat 437
>dbj|AK067542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110L13, full insert sequence Length = 4080 Score = 143 bits (72), Expect = 6e-31 Identities = 159/188 (84%) Strand = Plus / Plus Query: 227 ttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccggc 286 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 217 ttcagattctgcattgacaggggcggcacattcaccgacatctacgcagaggtgcccggg 276 Query: 287 gagccggaaggctatgttatgaagctcctctccgtcgacccgtccaactacgacgatgct 346 | ||||||||| || ||||| || ||||||||||||||||| ||||||||||| || Sbjct: 277 aggagggaaggctacgtgatgaaacttctctccgtcgacccgtcgaactacgacgacgcc 336 Query: 347 ccgatcgaggggatcaggaggattctagagcagttttctggtgaaagaatcccccggtcg 406 || ||||| |||||||||||||| || || |||| || || || || ||||| |||||| Sbjct: 337 cccatcgaagggatcaggaggatcctccaggagttctccggggagaggatcccgcggtcg 396 Query: 407 tccaagat 414 |||||||| Sbjct: 397 tccaagat 404
>ref|XM_477586.1| Oryza sativa (japonica cultivar-group), mRNA Length = 228 Score = 69.9 bits (35), Expect = 7e-09 Identities = 96/115 (83%), Gaps = 1/115 (0%) Strand = Plus / Plus Query: 226 gttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccgg 285 |||||| ||||||||||| |||||||||| |||||| ||||| || ||||| | ||||| Sbjct: 45 gttcaggttctgcattgacaggggcggcacattcaccaacatccacaccgagctgcccgg 104 Query: 286 cgagccggaaggctatgtta-tgaagctcctctccgtcgacccgtccaactacga 339 | ||||||||| | | ||||||| |||||||||||||||||||||||||| Sbjct: 105 aaggagggaaggctacgagaatgaagcttctctccgtcgacccgtccaactacga 159
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 7e-09 Identities = 96/115 (83%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 226 gttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccgg 285 |||||| ||||||||||| |||||||||| |||||| ||||| || ||||| | ||||| Sbjct: 11661622 gttcaggttctgcattgacaggggcggcacattcaccaacatccacaccgagctgcccgg 11661563 Query: 286 cgagccggaaggctatgtta-tgaagctcctctccgtcgacccgtccaactacga 339 | ||||||||| | | ||||||| |||||||||||||||||||||||||| Sbjct: 11661562 aaggagggaaggctacgagaatgaagcttctctccgtcgacccgtccaactacga 11661508
>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0680C01 Length = 145580 Score = 69.9 bits (35), Expect = 7e-09 Identities = 96/115 (83%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 226 gttcagattctgcattgatcggggcggcacgttcaccgacatctacgccgaggtccccgg 285 |||||| ||||||||||| |||||||||| |||||| ||||| || ||||| | ||||| Sbjct: 19781 gttcaggttctgcattgacaggggcggcacattcaccaacatccacaccgagctgcccgg 19722 Query: 286 cgagccggaaggctatgtta-tgaagctcctctccgtcgacccgtccaactacga 339 | ||||||||| | | ||||||| |||||||||||||||||||||||||| Sbjct: 19721 aaggagggaaggctacgagaatgaagcttctctccgtcgacccgtccaactacga 19667
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 233 ttctgcattgatcggggcggcacgttcaccgacatc 268 ||||| |||||||||||||| || |||||||||||| Sbjct: 416009 ttctggattgatcggggcgggaccttcaccgacatc 416044
>gb|AE005906.1| Caulobacter crescentus CB15 section 232 of 359 of the complete genome Length = 14482 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 233 ttctgcattgatcggggcggcacgttcaccgacatc 268 ||||| || ||||| ||||||||||||||||||||| Sbjct: 6705 ttctggatcgatcgcggcggcacgttcaccgacatc 6670
>ref|XM_323924.1| Neurospora crassa OR74A hypothetical protein (NCU04569.1) partial mRNA Length = 4128 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 308 aagctcctctccgtcgacccgtccaactacgacgatgc 345 ||||| |||||||||||||| |||||||||| ||||| Sbjct: 103 aagcttctctccgtcgacccagccaactacgatgatgc 140
>ref|XM_953575.1| Neurospora crassa OR74A hypothetical protein (NCU04569.1) partial mRNA Length = 4128 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 308 aagctcctctccgtcgacccgtccaactacgacgatgc 345 ||||| |||||||||||||| |||||||||| ||||| Sbjct: 103 aagcttctctccgtcgacccagccaactacgatgatgc 140
>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10 Length = 161126 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 308 aagctcctctccgtcgacccgtccaactacgacgatgc 345 ||||| |||||||||||||| |||||||||| ||||| Sbjct: 31856 aagcttctctccgtcgacccagccaactacgatgatgc 31819
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ggcggcacgttcaccgacatc 268 ||||||||||||||||||||| Sbjct: 2928708 ggcggcacgttcaccgacatc 2928688
>ref|NM_189402.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 318 Score = 42.1 bits (21), Expect = 1.5 Identities = 81/101 (80%) Strand = Plus / Plus Query: 314 ctctccgtcgacccgtccaactacgacgatgctccgatcgaggggatcaggaggattcta 373 |||||||| ||||||| ||||||||||| | || ||||| |||||||||| ||| || Sbjct: 178 ctctccgttgacccgttgaactacgacgacacccccatcgaagggatcaggaagatcctc 237 Query: 374 gagcagttttctggtgaaagaatcccccggtcgtccaagat 414 ||| |||| || || || || ||| |||||||||||||| Sbjct: 238 gaggagttgtccggggagaggatcatgcggtcgtccaagat 278
>ref|NM_178629.2| Mus musculus RIKEN cDNA 4930579E17 gene (4930579E17Rik), mRNA Length = 3907 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 61 gggtgctgatcgcggaggaag 41
>gb|BC003555.1| Homo sapiens nucleolar complex associated 2 homolog (S. cerevisiae), mRNA (cDNA clone MGC:1451 IMAGE:3546209), complete cds Length = 2801 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gcggaggaaggagaagatggg 213 ||||||||||||||||||||| Sbjct: 411 gcggaggaaggagaagatggg 431
>emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chromosome 1 Contains three novel genes, a novel gene (MGC45873), a novel gene (DKFZP564C186), a novel gene, a novel gene (DKFZP434H2010), a novel gene (MGC13275), the gene for bHLH factor Hes4 (Hes4), a ribosomal protein L39 (RPL39) pseudogene, a novel gene, the G1P2 gene for interferon alpha-inducible protein (clone IFI-15K), the AGRN gene for agrin, two novel genes and fifteen CpG islands, complete sequence Length = 186759 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 gcggaggaaggagaagatggg 213 ||||||||||||||||||||| Sbjct: 80851 gcggaggaaggagaagatggg 80831
>emb|AL050019.1|HSM800100 Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186) Length = 2762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gcggaggaaggagaagatggg 213 ||||||||||||||||||||| Sbjct: 394 gcggaggaaggagaagatggg 414
>dbj|AK024284.1| Homo sapiens cDNA FLJ14222 fis, clone NT2RP3003992, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186) Length = 2753 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gcggaggaaggagaagatggg 213 ||||||||||||||||||||| Sbjct: 392 gcggaggaaggagaagatggg 412
>dbj|AK142563.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630036H23 product:hypothetical protein, full insert sequence Length = 942 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 541 gggtgctgatcgcggaggaag 561
>dbj|AK045940.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230325G10 product:hypothetical 4-diphosphocytidyl-2C-methyl-D-erythritol synthase containing protein, full insert sequence Length = 1926 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 194 gggtgctgatcgcggaggaag 174
>dbj|AK039004.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230084F24 product:hypothetical 4-diphosphocytidyl-2C-methyl-D-erythritol synthase containing protein, full insert sequence Length = 3907 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 61 gggtgctgatcgcggaggaag 41
>gb|BC096030.1| Mus musculus RIKEN cDNA 4930579E17 gene, mRNA (cDNA clone MGC:106594 IMAGE:30610161), complete cds Length = 3142 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 89 gggtgctgatcgcggaggaag 69
>gb|BC050993.1| Mus musculus RIKEN cDNA 4930579E17 gene, mRNA (cDNA clone IMAGE:6507154) Length = 2631 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 31 gggtgctgatcgcggaggaag 11
>gb|BC086665.1| Mus musculus RIKEN cDNA 4930579E17 gene, mRNA (cDNA clone MGC:113755 IMAGE:30612014), complete cds Length = 2709 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 124 gggtgctgatcgcggaggaag 104
>gb|AC109333.28| Homo sapiens chromosome 17, clone RP11-115H24, complete sequence Length = 181825 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 ggaggaaggagaagatgggca 215 ||||||||||||||||||||| Sbjct: 91760 ggaggaaggagaagatgggca 91740
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cgacggtcacggcggcaaggc 34 ||||||||||||||||||||| Sbjct: 856903 cgacggtcacggcggcaaggc 856883
>ref|NM_015658.1| Homo sapiens nucleolar complex associated 2 homolog (S. cerevisiae) (NOC2L), mRNA Length = 2762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gcggaggaaggagaagatggg 213 ||||||||||||||||||||| Sbjct: 394 gcggaggaaggagaagatggg 414
>dbj|AK179086.1| Mus musculus cDNA, clone:Y0G0109B18, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000063547, based on BLAT search Length = 182 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 110 gggtgctgatcgcggaggaag 90
>emb|BX648399.1|HSM808547 Homo sapiens mRNA; cDNA DKFZp686M11224 (from clone DKFZp686M11224) Length = 4568 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 gcggaggaaggagaagatggg 213 ||||||||||||||||||||| Sbjct: 2911 gcggaggaaggagaagatggg 2891
>gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, complete sequence Length = 183380 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gggtgctgatcgcggaggaag 202 ||||||||||||||||||||| Sbjct: 79807 gggtgctgatcgcggaggaag 79787
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 cggacgctcccccgagcccctccc 143 |||||||||||||| ||||||||| Sbjct: 2862 cggacgctcccccgcgcccctccc 2839
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 acgccgaggtccccggcgagccgg 293 ||||||||||| |||||||||||| Sbjct: 68907 acgccgaggtcgccggcgagccgg 68930
>ref|XM_953562.1| Neurospora crassa OR74A hypothetical protein (NCU09888.1) partial mRNA Length = 1407 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgacggtcacggcggcaagg 33 |||||||||||||||||||| Sbjct: 1014 cgacggtcacggcggcaagg 1033
>ref|XM_330809.1| Neurospora crassa OR74A hypothetical protein (NCU09888.1) partial mRNA Length = 1407 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgacggtcacggcggcaagg 33 |||||||||||||||||||| Sbjct: 1014 cgacggtcacggcggcaagg 1033
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07, complete sequence Length = 142134 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 cggacgctcccccgagcccctccc 143 |||||||||||||| ||||||||| Sbjct: 133409 cggacgctcccccgcgcccctccc 133386
>emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the 3' end of the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK), the C9orf19 gene for ,chromosome 9 open reading frame 19 (GAPR-1, GLIPR2), the CCIN gene for calicin, the CLTA gene for clathrin, light polypeptide (LCA), the gene for UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase (NM, DMRV, IBM2, GLCNE)(GNE) and five CpG islands, complete sequence Length = 191436 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ctacttcctccgcctcccagattc 89 ||||| |||||||||||||||||| Sbjct: 152259 ctactacctccgcctcccagattc 152282
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cgccgaggtccccggcgagc 290 |||||||||||||||||||| Sbjct: 78303 cgccgaggtccccggcgagc 78322
>gb|U23511.1| Caenorhabditis elegans cosmid C32D5, complete sequence Length = 47703 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 aaggccaccgccgccaagtggaag 53 |||||||||| ||||||||||||| Sbjct: 31248 aaggccaccgtcgccaagtggaag 31225
>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region, complete sequence Length = 147086 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaaggagaagatgggcagcgtgg 221 ||||||||||||||||||| |||| Sbjct: 88452 ggaaggagaagatgggcagtgtgg 88475
>gb|AC007664.12| Homo sapiens chromosome 22 clone b453h4 map 22q11, complete sequence Length = 162470 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ggaaggagaagatgggcagcgtgg 221 ||||||||||||||||||| |||| Sbjct: 44548 ggaaggagaagatgggcagtgtgg 44571
>ref|NM_001026833.1| Caenorhabditis elegans C32D5.8b (Thioredoxin) mRNA, complete cds Length = 504 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 aaggccaccgccgccaagtggaag 53 |||||||||| ||||||||||||| Sbjct: 475 aaggccaccgtcgccaagtggaag 498
>ref|NM_001026832.1| Caenorhabditis elegans C32D5.8a (Thioredoxin) mRNA, complete cds Length = 690 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 aaggccaccgccgccaagtggaag 53 |||||||||| ||||||||||||| Sbjct: 489 aaggccaccgtcgccaagtggaag 512
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 cggacgctcccccgagcccctccc 143 |||||||||||||| ||||||||| Sbjct: 14274076 cggacgctcccccgcgcccctccc 14274053
>gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, complete sequence Length = 159064 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgctcccccgagcccctccc 143 |||||||||||||||||||| Sbjct: 23873 cgctcccccgagcccctccc 23854
>gb|AF317635.1|AF317635 Homo sapiens UDP-N-acetylglucosamine 2-epimerase gene, complete cds Length = 44003 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ctacttcctccgcctcccagattc 89 ||||| |||||||||||||||||| Sbjct: 7692 ctactacctccgcctcccagattc 7669
>gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, complete sequence Length = 171940 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cgctcccccgagcccctccc 143 |||||||||||||||||||| Sbjct: 28049 cgctcccccgagcccctccc 28068
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 gatcccaaccggcatgatcg 431 |||||||||||||||||||| Sbjct: 18163 gatcccaaccggcatgatcg 18182
>gb|AC136837.1| Homo sapiens chromosome 16 clone RP11-483N11, complete sequence Length = 65756 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cgctcccccgagcccctccc 143 |||||||||||||||||||| Sbjct: 63754 cgctcccccgagcccctccc 63773 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,049,385 Number of Sequences: 3902068 Number of extensions: 3049385 Number of successful extensions: 116166 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115740 Number of HSP's gapped (non-prelim): 418 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
