>SLD3_YEAST (P53135) DNA replication regulator SLD3|
          Length = 668

 Score = 35.4 bits (80), Expect = 0.070
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 199 DPYGPGFFFRWRFTYI*TYRMPRGRGSSVSTQEKPNA 309
           + YGPGF+ +W + Y   Y +P  R   V+T E+  A
Sbjct: 63  EEYGPGFWVKWPYNYFNGYSLPERRTEVVTTVERERA 99

>AIRE_MOUSE (Q9Z0E3) Autoimmune regulator (Autoimmune polyendocrinopathy|
           candidiasis ectodermal dystrophy protein homolog)
           (APECED protein homolog)
          Length = 552

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 24  LRSAPSGAGVCCCCLPTRKQRGDRNPNGLPPHPLPFQT 137
           L+  PSG   C CCL  R Q+    P    P  LP +T
Sbjct: 329 LQEIPSGLWRCSCCLQGRVQQNLSQPEVSRPPELPAET 366

>AT10D_HUMAN (Q9P241) Probable phospholipid-transporting ATPase VD (EC 3.6.3.1)|
           (ATPVD)
          Length = 1426

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
 Frame = +3

Query: 18  SNLRSAPSGAGVCCCCLPTRKQRGDR-----NPNGLPPHPL----------PFQTAGVHA 152
           S +  +P  +    CC  T KQ GD          LP  PL          P + A V+A
Sbjct: 677 SQVCESPQCSSSSACCTETEKQHGDAGLLNGKAESLPGQPLACNLCYEAESPDEAALVYA 736

Query: 153 EPASLCSSPRRRPLWRSVRAWILLPLAFHL 242
             A  C+   R P    V    L PL F L
Sbjct: 737 ARAYQCTLRSRTPEQVMVDFAALGPLTFQL 766

>ESR2_BOVIN (Q9XSB5) Estrogen receptor beta (ER-beta)|
          Length = 527

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 84  RGDRNPNGLPPHPLPFQTAGVHAEPASLCSSPRRRPLWRSVRA 212
           R   +PN L P P       +H +P+ L + P++ P WR  R+
Sbjct: 68  RQTTSPNVLWPTPGHLSPLAIHCQPSVLYAEPQKSP-WRETRS 109

>ZAR1_FUGRU (Q7T3T9) Zygote arrest 1 (Oocyte-specific maternal effect factor)|
          Length = 320

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 269 PRGILYV*M*VKRQRKKNPGPYGSP 195
           PR +L V   ++R+RK NPGP G+P
Sbjct: 97  PRTLLVVKRELRRRRKLNPGPPGTP 121

>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11|
          Length = 319

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 21/80 (26%), Positives = 29/80 (36%)
 Frame = +3

Query: 63  CLPTRKQRGDRNPNGLPPHPLPFQTAGVHAEPASLCSSPRRRPLWRSVRAWILLPLAFHL 242
           C PTR     R P  + PH                      +P  R + A +LLP   H 
Sbjct: 104 CAPTRTYAHTRAPTHVHPH----------------------KPRPRQLSAALLLPTPLHF 141

Query: 243 HLNIQNASRARFVCVNPREA 302
             ++ N S  + V  +P EA
Sbjct: 142 PEDLANVSAPQVVVFDPSEA 161

>IER5_MOUSE (O89113) Immediate early response gene 5 protein|
          Length = 308

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 57  CCCLPTRKQRGDRNPNGLPPHPLPFQ--TAGVHAEPASLCSSPRRRPL 194
           C C P  ++R   + +  PP P P +   AGV    AS CS+P   PL
Sbjct: 174 CGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGRAS-CSAPGSTPL 220

>FOXJ2_MOUSE (Q9ES18) Forkhead box protein J2 (Fork head homologous X)|
          Length = 565

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +3

Query: 60  CCLPTRKQRGDRN---PNGLPPHPLPFQTAGVHAEPASLCSSPRRRP 191
           C  P  KQ G      P G+  HP P Q  G H       S P ++P
Sbjct: 337 CTTPGGKQAGAEGYGPPTGMAMHPPPLQHGGYHPHQHHPHSHPAQQP 383

>ADA2B_BOVIN (O77700) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 392

 Score = 23.9 bits (50), Expect(2) = 8.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 60  CCLPTRKQRGDRNPNGLPPHPLPFQTAGVHAEPASLCSSPRRRP 191
           C     ++  +    G  P  LP       A PAS CS P ++P
Sbjct: 278 CGSSPEEEAEEEEEEGCEPQALP-------ASPASACSPPLQQP 314



 Score = 23.1 bits (48), Expect(2) = 8.5
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 293 KRSLMLMQQSILTNITAGIRGALIGCWGCLYFSF 394
           +R   L ++   T + A + G  + CW   +FS+
Sbjct: 342 RRRTQLSREKRFTFVLAVVIGVFVLCWFPFFFSY 375

>HES3_MOUSE (Q61657) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
 Frame = +3

Query: 36  PSGAGVCCCCLP-----TRKQRGDRNPNGLPPHP---LPFQTAGVHAEPASLCSSPRRRP 191
           P    V   CLP     +R   G  +P    P P   L   T  V  +PAS C +   RP
Sbjct: 108 PQATSVLNPCLPAIWAPSRAAGGSHSPQSPLPLPGGLLESSTDVVAPQPASNCQAESTRP 167

Query: 192 LWRSVRAW 215
            +R  R W
Sbjct: 168 GFRVWRPW 175

>ADA2A_RAT (P22909) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR) (CA2-47)
           (Alpha-2D adrenergic receptor)
          Length = 450

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
 Frame = +3

Query: 27  RSAPSGAGVCCCCLPTRKQRGDRNPNGLPPH-----------PLPFQTAGVHAEPA 161
           R  PS  G   C  P      DR PNGL P            PLP Q  G   EPA
Sbjct: 228 RVPPSRRGPDACSAPPGG--ADRRPNGLGPERGAGTAGAEAEPLPTQLNGAPGEPA 281

>ADA2A_MOUSE (Q01338) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR)
          Length = 450

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
 Frame = +3

Query: 27  RSAPSGAGVCCCCLPTRKQRGDRNPNGLPP-----------HPLPFQTAGVHAEPA 161
           R  PS  G   C  P      DR PNGL P            PLP Q  G   EPA
Sbjct: 228 RVPPSRRGPDACSAPPGG--ADRRPNGLGPERGAGPTGAEAEPLPTQLNGAPGEPA 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,289,249
Number of Sequences: 219361
Number of extensions: 1308060
Number of successful extensions: 4302
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4288
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)