ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl26h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507524.1| PREDICTED Oryza sativa (japonica cultivar-group... 139 9e-30
2ref|XM_506933.2| PREDICTED Oryza sativa (japonica cultivar-group... 139 9e-30
3ref|XM_467374.1| Oryza sativa (japonica cultivar-group), mRNA 139 9e-30
4dbj|AK101760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
5dbj|AK065645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
7dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
8dbj|AK100727.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
9dbj|AK066627.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
11dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
12gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, com... 44 0.40
13emb|CR726813.2|CNS0GNR7 Tetraodon nigroviridis full-length cDNA 44 0.40
14gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, compl... 44 0.40
15gb|AC090246.9| Homo sapiens chromosome 18, clone RP11-699C17, co... 44 0.40
16gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, com... 44 0.40
17gb|DQ481666.1| Takifugu rubripes HoxBb gene cluster, complete se... 42 1.6
18emb|BX897684.8| Zebrafish DNA sequence from clone CH211-107A4 in... 42 1.6
19emb|CR381602.30| Zebrafish DNA sequence from clone DKEY-183M22 i... 42 1.6
20emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in... 42 1.6
21gb|AC084626.1|CBRG45C20 Caenorhabditis briggsae cosmid G45C20, c... 42 1.6
22emb|AJ301646.2|FRU301646 Takifugu rubripes CRFR gene for cortico... 42 1.6
23emb|AL935047.12| Zebrafish DNA sequence from clone DKEY-20L10, c... 42 1.6
24gb|AC165370.4| Mus musculus BAC clone RP23-2N3 from chromosome 1... 40 6.3
25gb|AC146175.1| Pan troglodytes BAC clone CH251-559G23 from Y, co... 40 6.3
26gb|AC145769.1| Pan troglodytes BAC clone CH251-203H3 from Y, com... 40 6.3
27emb|AL157414.19| Human DNA sequence from clone RP11-560A15 on ch... 40 6.3
28emb|AL139118.12| Human DNA sequence from clone RP11-162K11 on ch... 40 6.3
29gb|AC156039.4| Mus musculus BAC clone RP23-24C2 from chromosome ... 40 6.3
30emb|AL929155.4| Zebrafish DNA sequence from clone DKEY-265M8 in ... 40 6.3
31gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, compl... 40 6.3
32dbj|BS000565.1| Pan troglodytes chromosome Y clone:PTFY-001A13, ... 40 6.3
33dbj|BS000558.1| Pan troglodytes chromosome Y clone:PTB-471H19, c... 40 6.3
34gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.3
35ref|NG_002933.1| Homo sapiens raft-linking protein pseudogene (L... 40 6.3
36gb|AC153921.5| Mus musculus 10 BAC RP23-89C21 (Roswell Park Canc... 40 6.3
37emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 i... 40 6.3
38gb|AC007275.4|AC007275 Homo sapiens BAC clone RP11-109F19 from Y... 40 6.3
39gb|AC098806.3| Takifugu rubripes clone 208D11, complete sequence 40 6.3
40gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.3
41emb|BX005260.12| Zebrafish DNA sequence from clone DKEY-209F7 in... 40 6.3
42emb|AL627327.29| Mouse DNA sequence from clone RP23-62O17 on chr... 40 6.3
43emb|BX649330.5| Zebrafish DNA sequence from clone CH211-140F21 i... 40 6.3
44emb|BX072555.14| Zebrafish DNA sequence from clone DKEY-30O19 in... 40 6.3
45gb|AC133944.4| Mus musculus BAC clone RP24-113L10 from 10, compl... 40 6.3
46gb|AC004637.1|AC004637 Homo sapiens chromosome 19, cosmid F16815... 40 6.3
47dbj|AP004248.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.3 
>ref|XM_507524.1| PREDICTED Oryza sativa (japonica cultivar-group), P0680A05.13 mRNA
          Length = 3048

 Score =  139 bits (70), Expect = 9e-30
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                       
Query: 367 tcttgtccaaaggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatc 426
           ||||| || ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 470 tcttgccctaaggttcacagctcaatgtgcagtgagctgacaatgatgttagataaagtc 529

                                                 
Query: 427 tcctctattcttccatcaattgaggcagctcgaccagg 464
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 530 tcctctattcttccattaattgaggcagctcgaccagg 567
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>ref|XM_506933.2| PREDICTED Oryza sativa (japonica cultivar-group), P0680A05.13 mRNA
          Length = 3203

 Score =  139 bits (70), Expect = 9e-30
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                       
Query: 367 tcttgtccaaaggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatc 426
           ||||| || ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 603 tcttgccctaaggttcacagctcaatgtgcagtgagctgacaatgatgttagataaagtc 662

                                                 
Query: 427 tcctctattcttccatcaattgaggcagctcgaccagg 464
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 663 tcctctattcttccattaattgaggcagctcgaccagg 700
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>ref|XM_467374.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2925

 Score =  139 bits (70), Expect = 9e-30
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                       
Query: 367 tcttgtccaaaggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatc 426
           ||||| || ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 403 tcttgccctaaggttcacagctcaatgtgcagtgagctgacaatgatgttagataaagtc 462

                                                 
Query: 427 tcctctattcttccatcaattgaggcagctcgaccagg 464
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 463 tcctctattcttccattaattgaggcagctcgaccagg 500
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>dbj|AK101760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063P17, full
           insert sequence
          Length = 3202

 Score =  139 bits (70), Expect = 9e-30
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                       
Query: 367 tcttgtccaaaggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatc 426
           ||||| || ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 602 tcttgccctaaggttcacagctcaatgtgcagtgagctgacaatgatgttagataaagtc 661

                                                 
Query: 427 tcctctattcttccatcaattgaggcagctcgaccagg 464
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 662 tcctctattcttccattaattgaggcagctcgaccagg 699
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>dbj|AK065645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035E07, full
           insert sequence
          Length = 3051

 Score =  139 bits (70), Expect = 9e-30
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                       
Query: 367 tcttgtccaaaggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatc 426
           ||||| || ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 472 tcttgccctaaggttcacagctcaatgtgcagtgagctgacaatgatgttagataaagtc 531

                                                 
Query: 427 tcctctattcttccatcaattgaggcagctcgaccagg 464
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 532 tcctctattcttccattaattgaggcagctcgaccagg 569
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 1e-28
 Identities = 83/88 (94%)
 Strand = Plus / Minus

                                                                            
Query: 377      aggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatctcctctattc 436
                |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 29157316 aggttcacagctcaatgtgcagtgagctgacaatgatgttagataaagtctcctctattc 29157257

                                            
Query: 437      ttccatcaattgaggcagctcgaccagg 464
                |||||| |||||||||||||||||||||
Sbjct: 29157256 ttccattaattgaggcagctcgaccagg 29157229
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>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0680A05
          Length = 168092

 Score =  135 bits (68), Expect = 1e-28
 Identities = 83/88 (94%)
 Strand = Plus / Minus

                                                                         
Query: 377   aggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatctcctctattc 436
             |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 47284 aggttcacagctcaatgtgcagtgagctgacaatgatgttagataaagtctcctctattc 47225

                                         
Query: 437   ttccatcaattgaggcagctcgaccagg 464
             |||||| |||||||||||||||||||||
Sbjct: 47224 ttccattaattgaggcagctcgaccagg 47197
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>dbj|AK100727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117E08, full
           insert sequence
          Length = 2924

 Score =  131 bits (66), Expect = 2e-27
 Identities = 90/98 (91%)
 Strand = Plus / Plus

                                                                       
Query: 367 tcttgtccaaaggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatc 426
           ||||| || ||||||||||||||| | ||||||||| ||||||||||| |||||||| ||
Sbjct: 402 tcttgccctaaggttcacagctcaatatgcagtgagctgacaatgatgttagataaagtc 461

                                                 
Query: 427 tcctctattcttccatcaattgaggcagctcgaccagg 464
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 462 tcctctattcttccattaattgaggcagctcgaccagg 499
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>dbj|AK066627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072C11, full
           insert sequence
          Length = 3167

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Plus

                                                                       
Query: 372 tccaaaggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatctcctc 431
           ||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||| ||
Sbjct: 508 tccaaaggttcacagctcaatgtgcagtgaattgacaatgatgttagataaagtctcttc 567

                          
Query: 432 tattcttccatcaat 446
           ||||||||| |||||
Sbjct: 568 tattcttccctcaat 582
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 377      aggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatctcctctattc 436
                |||||||||||||| |||||||||| |||||||||||| |||||||| |||| |||||||
Sbjct: 16049674 aggttcacagctcaatgtgcagtgaattgacaatgatgttagataaagtctcttctattc 16049615

                          
Query: 437      ttccatcaat 446
                |||| |||||
Sbjct: 16049614 ttccctcaat 16049605
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>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0618D11
          Length = 150103

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                         
Query: 377   aggttcacagctcattgtgcagtgagttgacaatgatgctagataaaatctcctctattc 436
             |||||||||||||| |||||||||| |||||||||||| |||||||| |||| |||||||
Sbjct: 78403 aggttcacagctcaatgtgcagtgaattgacaatgatgttagataaagtctcttctattc 78344

                       
Query: 437   ttccatcaat 446
             |||| |||||
Sbjct: 78343 ttccctcaat 78334
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>gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, complete sequence
          Length = 187304

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 96     ccctccatccctccgtccgtcc 117
              ||||||||||||||||||||||
Sbjct: 140255 ccctccatccctccgtccgtcc 140276
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>emb|CR726813.2|CNS0GNR7 Tetraodon nigroviridis full-length cDNA
          Length = 1453

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 96  ccctccatccctccgtccgtcc 117
           ||||||||||||||||||||||
Sbjct: 766 ccctccatccctccgtccgtcc 745
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>gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, complete sequence
          Length = 224994

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 96     ccctccatccctccgtccgtcc 117
              ||||||||||||||||||||||
Sbjct: 177188 ccctccatccctccgtccgtcc 177167
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>gb|AC090246.9| Homo sapiens chromosome 18, clone RP11-699C17, complete sequence
          Length = 176433

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 96     ccctccatccctccgtccgtcc 117
              ||||||||||||||||||||||
Sbjct: 158621 ccctccatccctccgtccgtcc 158600
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>gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, complete sequence
          Length = 199051

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 96    ccctccatccctccgtccgtcc 117
             ||||||||||||||||||||||
Sbjct: 88192 ccctccatccctccgtccgtcc 88171
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>gb|DQ481666.1| Takifugu rubripes HoxBb gene cluster, complete sequence
          Length = 130146

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    tccatctatcccctctgtccc 197
              |||||||||||||||||||||
Sbjct: 111348 tccatctatcccctctgtccc 111368



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    tccatctatcccctctgtccc 197
              |||||||||||||||||||||
Sbjct: 111187 tccatctatcccctctgtccc 111207



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 112042 ccatctatcccctctgtccc 112061



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 111980 ccatctatcccctctgtccc 111999



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 111826 ccatctatcccctctgtccc 111845



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 111732 ccatctatcccctctgtccc 111751



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 111700 ccatctatcccctctgtccc 111719



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 111413 ccatctatcccctctgtccc 111432



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 111317 ccatctatcccctctgtccc 111336



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccatctatcccctctgtccc 197
              ||||||||||||||||||||
Sbjct: 111252 ccatctatcccctctgtccc 111271
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>emb|BX897684.8| Zebrafish DNA sequence from clone CH211-107A4 in linkage group 7,
              complete sequence
          Length = 147920

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     tccatccctccgtccgtccat 119
              |||||||||||||||||||||
Sbjct: 146463 tccatccctccgtccgtccat 146443
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>emb|CR381602.30| Zebrafish DNA sequence from clone DKEY-183M22 in linkage group 6,
              complete sequence
          Length = 192136

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     tccatccctccgtccgtccat 119
              |||||||||||||||||||||
Sbjct: 107657 tccatccctccgtccgtccat 107677
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>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21,
             complete sequence
          Length = 129478

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    tccatccctccgtccgtccat 119
             |||||||||||||||||||||
Sbjct: 60491 tccatccctccgtccgtccat 60471
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>gb|AC084626.1|CBRG45C20 Caenorhabditis briggsae cosmid G45C20, complete sequence
          Length = 40165

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     tagactaggaggagactggtc 23
             |||||||||||||||||||||
Sbjct: 16108 tagactaggaggagactggtc 16128
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>emb|AJ301646.2|FRU301646 Takifugu rubripes CRFR gene for corticotrophin releasing factor
             receptor, exons 1-14
          Length = 27693

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   tccatctatcccctctgtccc 197
             |||||||||||||||||||||
Sbjct: 17637 tccatctatcccctctgtccc 17657



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   tccatctatcccctctgtccc 197
             |||||||||||||||||||||
Sbjct: 17510 tccatctatcccctctgtccc 17530
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>emb|AL935047.12| Zebrafish DNA sequence from clone DKEY-20L10, complete sequence
          Length = 201929

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     tccatccctccgtccgtccat 119
              |||||||||||||||||||||
Sbjct: 118294 tccatccctccgtccgtccat 118314
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>gb|AC165370.4| Mus musculus BAC clone RP23-2N3 from chromosome 10, complete sequence
          Length = 219653

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    tcctctattcttccatcaat 446
              ||||||||||||||||||||
Sbjct: 174675 tcctctattcttccatcaat 174656
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>gb|AC146175.1| Pan troglodytes BAC clone CH251-559G23 from Y, complete sequence
          Length = 228185

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    ttgtccaaaggttcacagct 388
              ||||||||||||||||||||
Sbjct: 169817 ttgtccaaaggttcacagct 169836
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>gb|AC145769.1| Pan troglodytes BAC clone CH251-203H3 from Y, complete sequence
          Length = 165958

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    ttgtccaaaggttcacagct 388
              ||||||||||||||||||||
Sbjct: 107590 ttgtccaaaggttcacagct 107609
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>emb|AL157414.19| Human DNA sequence from clone RP11-560A15 on chromosome 20 Contains two
             novel genes, the 3' part of the BMP7 for bone
             morphogenetic protein 7 and a CpG island, complete
             sequence
          Length = 124849

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   cctggaggaagcagggttcc 175
             ||||||||||||||||||||
Sbjct: 97991 cctggaggaagcagggttcc 97972
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>emb|AL139118.12| Human DNA sequence from clone RP11-162K11 on chromosome 10 Contains the
             5' end of a novel gene, part of the PLCE1 gene for
             phospholipase C, epsilon 1 (PLCE, KIAA1516), a novel gene
             and the 5' end of a histone deacetylase 1 (HD1, RPD3,
             RPD3L1) (HDAC1) pseudogene, complete sequence
          Length = 45754

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   aggaagcagggttccttcca 180
             ||||||||||||||||||||
Sbjct: 18345 aggaagcagggttccttcca 18364
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>gb|AC156039.4| Mus musculus BAC clone RP23-24C2 from chromosome 10, complete sequence
          Length = 206634

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    tcctctattcttccatcaat 446
              ||||||||||||||||||||
Sbjct: 109350 tcctctattcttccatcaat 109331
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>emb|AL929155.4| Zebrafish DNA sequence from clone DKEY-265M8 in linkage group 7 Contains
              a novel gene similar to mouse and human MRPL46
              (mitochondrial ribosomal protein L46), a novel gene similar
              to mouse and human MRPS11 (mitochondrial ribosomal protein
              S11) and four CpG islands, complete sequence
          Length = 173326

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     acccctccatccctccgtccgtcc 117
              |||| |||||||||||||||||||
Sbjct: 131716 acccatccatccctccgtccgtcc 131693
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>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence
          Length = 186563

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   ttccttccatctatcccctc 191
             ||||||||||||||||||||
Sbjct: 88269 ttccttccatctatcccctc 88250
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>dbj|BS000565.1| Pan troglodytes chromosome Y clone:PTFY-001A13, complete sequences
          Length = 38797

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   ttgtccaaaggttcacagct 388
             ||||||||||||||||||||
Sbjct: 29975 ttgtccaaaggttcacagct 29956
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>dbj|BS000558.1| Pan troglodytes chromosome Y clone:PTB-471H19, complete sequences
          Length = 156402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   ttgtccaaaggttcacagct 388
             ||||||||||||||||||||
Sbjct: 45637 ttgtccaaaggttcacagct 45618
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    ttgtccaaaggttcacagct 388
              ||||||||||||||||||||
Sbjct: 477135 ttgtccaaaggttcacagct 477116
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>ref|NG_002933.1| Homo sapiens raft-linking protein pseudogene (LOC360015) on chromosome
             Y
          Length = 63921

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   ttgtccaaaggttcacagct 388
             ||||||||||||||||||||
Sbjct: 21839 ttgtccaaaggttcacagct 21858
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>gb|AC153921.5| Mus musculus 10 BAC RP23-89C21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 212543

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   acaaataacagcaacaagga 231
             ||||||||||||||||||||
Sbjct: 32309 acaaataacagcaacaagga 32290
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>emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 in linkage group 5,
             complete sequence
          Length = 159528

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 428   cctctattcttccatcaatt 447
             ||||||||||||||||||||
Sbjct: 29612 cctctattcttccatcaatt 29593
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>gb|AC007275.4|AC007275 Homo sapiens BAC clone RP11-109F19 from Y, complete sequence
          Length = 169904

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   ttgtccaaaggttcacagct 388
             ||||||||||||||||||||
Sbjct: 44119 ttgtccaaaggttcacagct 44100
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>gb|AC098806.3| Takifugu rubripes clone 208D11, complete sequence
          Length = 130460

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     acccctccatccctccgtccgtcc 117
              |||||||||||| |||||||||||
Sbjct: 111508 acccctccatccatccgtccgtcc 111485
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      gaaccccacccgcttccggc 79
               ||||||||||||||||||||
Sbjct: 3555379 gaaccccacccgcttccggc 3555398
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>emb|BX005260.12| Zebrafish DNA sequence from clone DKEY-209F7 in linkage group 16,
              complete sequence
          Length = 197061

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     ccctccatccctccgtccgtccat 119
              |||||||||| |||||||||||||
Sbjct: 193850 ccctccatccgtccgtccgtccat 193827
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>emb|AL627327.29| Mouse DNA sequence from clone RP23-62O17 on chromosome 4, complete
             sequence
          Length = 249562

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    ccctccatccctccgtccgtccat 119
             |||||||||||||||||| |||||
Sbjct: 63972 ccctccatccctccgtccctccat 63995
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>emb|BX649330.5| Zebrafish DNA sequence from clone CH211-140F21 in linkage group 22,
             complete sequence
          Length = 163964

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    ccctccatccctccgtccgtccat 119
             |||||||||| |||||||||||||
Sbjct: 33973 ccctccatccatccgtccgtccat 33950
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>emb|BX072555.14| Zebrafish DNA sequence from clone DKEY-30O19 in linkage group 22,
              complete sequence
          Length = 227616

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     ccctccatccctccgtccgtccat 119
              |||||||||| |||||||||||||
Sbjct: 171470 ccctccatccatccgtccgtccat 171447
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>gb|AC133944.4| Mus musculus BAC clone RP24-113L10 from 10, complete sequence
          Length = 167418

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    tcctctattcttccatcaat 446
              ||||||||||||||||||||
Sbjct: 139725 tcctctattcttccatcaat 139744
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>gb|AC004637.1|AC004637 Homo sapiens chromosome 19, cosmid F16815, complete sequence
          Length = 41459

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    ccctccatccctccgtccgtccat 119
             |||||||||||||||||| |||||
Sbjct: 18435 ccctccatccctccgtccctccat 18412
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>dbj|AP004248.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-709M17, complete
             sequence
          Length = 191071

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    ccctccatccctccgtccgtccat 119
             |||||||||||||| |||||||||
Sbjct: 86318 ccctccatccctccatccgtccat 86341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,411,610
Number of Sequences: 3902068
Number of extensions: 3411610
Number of successful extensions: 65272
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65073
Number of HSP's gapped (non-prelim): 198
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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