ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl26h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188704.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3009 Score = 95.6 bits (48), Expect = 1e-16 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 314 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 367 ||||||||||| || | |||||| ||||| | |||||||||| ||||| | |||| Sbjct: 70 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 129 Query: 368 ctcgcggactggaacccccgcgacgccacgccctgcggctggacgggcgtctcctgcgtc 427 || |||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | Sbjct: 130 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcgac 189 Query: 428 gacggcg 434 | ||||| Sbjct: 190 gccggcg 196
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 1e-16 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 314 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 367 ||||||||||| || | |||||| ||||| | |||||||||| ||||| | |||| Sbjct: 7738301 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 7738360 Query: 368 ctcgcggactggaacccccgcgacgccacgccctgcggctggacgggcgtctcctgcgtc 427 || |||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | Sbjct: 7738361 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcgac 7738420 Query: 428 gacggcg 434 | ||||| Sbjct: 7738421 gccggcg 7738427
>dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0010K01 Length = 144404 Score = 95.6 bits (48), Expect = 1e-16 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 314 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 367 ||||||||||| || | |||||| ||||| | |||||||||| ||||| | |||| Sbjct: 40882 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 40941 Query: 368 ctcgcggactggaacccccgcgacgccacgccctgcggctggacgggcgtctcctgcgtc 427 || |||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | Sbjct: 40942 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcgac 41001 Query: 428 gacggcg 434 | ||||| Sbjct: 41002 gccggcg 41008
>dbj|AK122130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B05, full insert sequence Length = 3604 Score = 95.6 bits (48), Expect = 1e-16 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 314 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 367 ||||||||||| || | |||||| ||||| | |||||||||| ||||| | |||| Sbjct: 229 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 288 Query: 368 ctcgcggactggaacccccgcgacgccacgccctgcggctggacgggcgtctcctgcgtc 427 || |||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | Sbjct: 289 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcgac 348 Query: 428 gacggcg 434 | ||||| Sbjct: 349 gccggcg 355
>dbj|AK067723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116J03, full insert sequence Length = 3671 Score = 95.6 bits (48), Expect = 1e-16 Identities = 107/127 (84%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 314 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 367 ||||||||||| || | |||||| ||||| | |||||||||| ||||| | |||| Sbjct: 174 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 233 Query: 368 ctcgcggactggaacccccgcgacgccacgccctgcggctggacgggcgtctcctgcgtc 427 || |||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | Sbjct: 234 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcgac 293 Query: 428 gacggcg 434 | ||||| Sbjct: 294 gccggcg 300
>ref|XM_483250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1974 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 398 ccctgcggctggacgggcgtctcctgcgtcgacggcg 434 |||||||||||| |||||||| ||||||||||||||| Sbjct: 175 ccctgcggctggtcgggcgtcacctgcgtcgacggcg 211
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 398 ccctgcggctggacgggcgtctcctgcgtcgacggcg 434 |||||||||||| |||||||| ||||||||||||||| Sbjct: 25053768 ccctgcggctggtcgggcgtcacctgcgtcgacggcg 25053804
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0025J22 Length = 175355 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 398 ccctgcggctggacgggcgtctcctgcgtcgacggcg 434 |||||||||||| |||||||| ||||||||||||||| Sbjct: 109884 ccctgcggctggtcgggcgtcacctgcgtcgacggcg 109920
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete sequence Length = 144798 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 tctgctctgctctgctcagctt 30 |||||||||||||||||||||| Sbjct: 112192 tctgctctgctctgctcagctt 112213
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagctt 30 |||||||||||||||||||||| Sbjct: 21093514 tctgctctgctctgctcagctt 21093493
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ttctgctctgctctgctcagct 29 |||||||||||||||||||||| Sbjct: 35093824 ttctgctctgctctgctcagct 35093845 Score = 42.1 bits (21), Expect = 1.5 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 230 accaccatggccgccttcctccccctcctgctgctcg 266 ||||||||||||||| |||||| ||||||||| |||| Sbjct: 20076424 accaccatggccgcc-tcctcctcctcctgcttctcg 20076459
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 cctgctgctcgccgtggcggcc 277 |||||||||||||||||||||| Sbjct: 7066765 cctgctgctcgccgtggcggcc 7066786 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cgcgcgctcaccgcctccgcg 367 ||||||||||||||||||||| Sbjct: 4093927 cgcgcgctcaccgcctccgcg 4093947
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 tcctccccctcctgctgctcgccgtg 271 ||||||||||||||||||||| |||| Sbjct: 805011 tcctccccctcctgctgctcggcgtg 805036
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ttctgctctgctctgctcagct 29 |||||||||||||||||||||| Sbjct: 154165 ttctgctctgctctgctcagct 154186
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ttctgctctgctctgctcagct 29 |||||||||||||||||||||| Sbjct: 66987 ttctgctctgctctgctcagct 67008
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagctt 30 |||||||||||||||||||||| Sbjct: 21104778 tctgctctgctctgctcagctt 21104757
>gb|M33818.1|PSECARAA P.aeruginosa carbamoylphosphate synthetase (carA and carB) genes, complete cds, and 5' end Length = 1747 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 301 ggcgctcgggctcaaccaggacggcctctacctg 334 ||||||||||||||||| ||||||| ||| |||| Sbjct: 1210 ggcgctcgggctcaacccggacggcatcttcctg 1243
>gb|AC115905.8| Mus musculus chromosome 1, clone RP24-472N17, complete sequence Length = 173914 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagcttgct 33 ||||||||||||||||| ||||||| Sbjct: 13673 tctgctctgctctgctctgcttgct 13649
>gb|AC124821.5| Mus musculus chromosome 1, clone RP24-211L16, complete sequence Length = 185212 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 9 tctgctctgctctgctcagcttgct 33 ||||||||||||||||| ||||||| Sbjct: 10788 tctgctctgctctgctctgcttgct 10812
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 262 gctcgccgtggcggccaatgccgcc 286 ||||||||| ||||||||||||||| Sbjct: 264421 gctcgccgtcgcggccaatgccgcc 264397
>gb|AC107843.10| Mus musculus chromosome 1, clone RP23-306B14, complete sequence Length = 180315 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagct 29 ||||||||||||||||||||| Sbjct: 49768 tctgctctgctctgctcagct 49748
>gb|AY578882.1| Drosophila mojavensis microsatellite DMOJ5300 sequence Length = 479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagct 29 ||||||||||||||||||||| Sbjct: 159 tctgctctgctctgctcagct 139
>gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome 14, complete sequence Length = 237561 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagct 29 ||||||||||||||||||||| Sbjct: 113800 tctgctctgctctgctcagct 113780
>ref|XM_001002114.1| PREDICTED: Mus musculus similar to growth arrest-specific 2 like 2; GAS2-related protein (LOC237891), mRNA Length = 2989 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 ctgctctgctctgctcagctt 30 ||||||||||||||||||||| Sbjct: 28 ctgctctgctctgctcagctt 8
>gb|AC123847.4| Mus musculus BAC clone RP23-443O1 from chromosome 3, complete sequence Length = 189689 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagct 29 ||||||||||||||||||||| Sbjct: 95168 tctgctctgctctgctcagct 95148
>gb|AC130206.2| Mus musculus BAC clone RP24-448F6 from chromosome 13, complete sequence Length = 155659 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 tgctctgctctgctcagcttg 31 ||||||||||||||||||||| Sbjct: 50899 tgctctgctctgctcagcttg 50879
>gb|AC124538.4| Mus musculus BAC clone RP23-338P10 from chromosome 1, complete sequence Length = 181512 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 gcttctgctctgctctgctcagctt 30 |||||||||||||||||||| |||| Sbjct: 18556 gcttctgctctgctctgctctgctt 18532
>gb|AC124175.2| Mus musculus BAC clone RP23-183N18 from 1, complete sequence Length = 227946 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 gcttctgctctgctctgctcagctt 30 |||||||||||||||||||| |||| Sbjct: 13280 gcttctgctctgctctgctctgctt 13304
>emb|AL159163.40| Human DNA sequence from clone RP11-514O12 on chromosome 6 Contains the 5' end of a variant of the RPS6KA2 gene for ribosomal protein S6 kinase, 90kD, polypeptide 2 (RSK3), a novel gene, the 3' end of the gene for ribonuclease 6 precursor (RNASE6PL)(FLJ10907) and 2 CpG islands, complete sequence Length = 156938 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tctgctctgctctgctcagct 29 ||||||||||||||||||||| Sbjct: 128277 tctgctctgctctgctcagct 128297
>emb|AL663096.16| Mouse DNA sequence from clone RP23-249K18 on chromosome 11 Contains two novel genes, the gene for a novel protein similar to human GAS2-related protein, the Mmp28 gene for matrix metalloproteinase 28 (epilysin), the 5' end of the Taf15 gene for TAF15 RNA polymerase II TATA box binding protein (TBP)-associated factor and a CpG island, complete sequence Length = 86442 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 ctgctctgctctgctcagctt 30 ||||||||||||||||||||| Sbjct: 25619 ctgctctgctctgctcagctt 25639
>gb|AC124036.5| Mus Musculus Strain C57BL6/J chromosome 11 BAC Clone RP24-100D7, Complete Sequence, complete sequence Length = 228907 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 ctgctctgctctgctcagctt 30 ||||||||||||||||||||| Sbjct: 175960 ctgctctgctctgctcagctt 175980
>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence Length = 256999 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 cttctgctctgctctgctcag 27 ||||||||||||||||||||| Sbjct: 179620 cttctgctctgctctgctcag 179600
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 ctcaccgcctccgcgctcgcg 373 ||||||||||||||||||||| Sbjct: 2164306 ctcaccgcctccgcgctcgcg 2164286
>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence Length = 159741 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 cttctgctctgctctgctcag 27 ||||||||||||||||||||| Sbjct: 139824 cttctgctctgctctgctcag 139844
>dbj|AP004847.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1298_H07 Length = 106434 Score = 42.1 bits (21), Expect = 1.5 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 230 accaccatggccgccttcctccccctcctgctgctcg 266 ||||||||||||||| |||||| ||||||||| |||| Sbjct: 24947 accaccatggccgcc-tcctcctcctcctgcttctcg 24982
>dbj|AK101654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057E24, full insert sequence Length = 926 Score = 42.1 bits (21), Expect = 1.5 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 230 accaccatggccgccttcctccccctcctgctgctcg 266 ||||||||||||||| |||||| ||||||||| |||| Sbjct: 331 accaccatggccgcc-tcctcctcctcctgcttctcg 296
>gb|AY108043.1| Zea mays PCO126675 mRNA sequence Length = 708 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 234 ccatggccgccttcctccccctcctgctgctcgccgt 270 ||||||||||| ||||||||||||| | |||||||| Sbjct: 77 ccatggccgcccgcctccccctcctggtcctcgccgt 113
>gb|AC170922.3| Mus musculus BAC clone CH36-2J1 from chromosome 13, complete sequence Length = 178680 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 tgctctgctctgctcagcttg 31 ||||||||||||||||||||| Sbjct: 48008 tgctctgctctgctcagcttg 48028
>emb|AL807402.1|CNS08CA6 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 437H9 of library RPCI-23 from chromosome 11 of strain C57Bl/6 of Mus musculus (mouse) Length = 205701 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 ctgctctgctctgctcagctt 30 ||||||||||||||||||||| Sbjct: 71671 ctgctctgctctgctcagctt 71691
>dbj|AB037203.1| Glycyrrhiza glabra GgbAS1 mRNA for beta-amyrin synthase, complete cds Length = 2671 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 9 tctgctctgctctgctcagcttgct 33 ||||||||||||||||| ||||||| Sbjct: 57 tctgctctgctctgctctgcttgct 81
>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete sequence Length = 157397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccccatccatctccatctca 85 |||||||||||||||||||| Sbjct: 43004 ccccatccatctccatctca 43023
>gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosome 8, complete sequence Length = 207917 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgtcctctcccccatccatc 76 |||||||||||||||||||| Sbjct: 139121 tgtcctctcccccatccatc 139140
>gb|BC052252.1| Homo sapiens exosome component 6, mRNA (cDNA clone MGC:59978 IMAGE:6256140), complete cds Length = 1729 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 cgcgctcaccgcctccgcgctcgc 372 ||||||||||||| |||||||||| Sbjct: 510 cgcgctcaccgccgccgcgctcgc 533
>ref|XM_463123.1| Oryza sativa (japonica cultivar-group), mRNA Length = 773 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccccatccatctccatctca 85 |||||||||||||||||||| Sbjct: 417 ccccatccatctccatctca 436
>gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, complete sequence Length = 203811 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagcttgc 32 ||||||||||||||||| |||||| Sbjct: 25075 tctgctctgctctgctctgcttgc 25052
>ref|XM_472239.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2403 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 atccatctccatctcaataa 89 |||||||||||||||||||| Sbjct: 1497 atccatctccatctcaataa 1478
>ref|NM_058219.2| Homo sapiens exosome component 6 (EXOSC6), mRNA Length = 1729 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 cgcgctcaccgcctccgcgctcgc 372 ||||||||||||| |||||||||| Sbjct: 510 cgcgctcaccgccgccgcgctcgc 533
>gb|AC152062.6| Mus musculus BAC clone RP23-341K9 from chromosome 10, complete sequence Length = 240781 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgcgcgctcaccgcctccgc 366 |||||||||||||||||||| Sbjct: 210404 cgcgcgctcaccgcctccgc 210423
>gb|AC154907.3| Mus musculus BAC clone RP23-312K18 from chromosome 8, complete sequence Length = 182534 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgtcctctcccccatccatc 76 |||||||||||||||||||| Sbjct: 27191 tgtcctctcccccatccatc 27210
>gb|AF448724.1| Sinorhizobium meliloti phage PBC5, complete genome Length = 57416 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctcgccgtcgccaatgccga 139 |||||||||||||||||||| Sbjct: 33015 ctcgccgtcgccaatgccga 33034
>gb|AC139636.12| Mus musculus chromosome 5, clone RP24-182D2, complete sequence Length = 172097 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tctgctctgctctgctcagc 28 |||||||||||||||||||| Sbjct: 50933 tctgctctgctctgctcagc 50952
>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence Length = 218490 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 tctgctctgctcagcttgctcagc 37 |||||||||||| ||||||||||| Sbjct: 107131 tctgctctgctctgcttgctcagc 107108
>ref|XM_656414.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3902.2), mRNA Length = 1596 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcgccgtcgccaatgccgac 140 |||||||||||||||||||| Sbjct: 758 tcgccgtcgccaatgccgac 777
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccccatccatctccatctca 85 |||||||||||||||||||| Sbjct: 22625142 ccccatccatctccatctca 22625123 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagc 28 |||||||||||||||||||| Sbjct: 10962673 tctgctctgctctgctcagc 10962654
>gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome 8, complete sequence Length = 191753 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gcttctgctctgctctgctc 25 |||||||||||||||||||| Sbjct: 35469 gcttctgctctgctctgctc 35488
>gb|AC125123.4| Mus musculus BAC clone RP24-270C10 from chromosome 3, complete sequence Length = 121877 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 tgctctgctctgctcagcttgctc 34 ||||||||||||||| |||||||| Sbjct: 71842 tgctctgctctgctctgcttgctc 71819
>gb|BC039194.1| Homo sapiens cDNA clone IMAGE:4281687, with apparent retained intron Length = 1421 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 cgcgctcaccgcctccgcgctcgc 372 ||||||||||||| |||||||||| Sbjct: 525 cgcgctcaccgccgccgcgctcgc 548
>emb|CR956362.5| Pig DNA sequence from clone CH242-98D1 on chromosome 17, complete sequence Length = 212503 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctccccctcctgctgctcgc 267 |||||||||||||||||||| Sbjct: 16922 ctccccctcctgctgctcgc 16903
>gb|AC120124.9| Mus musculus chromosome 7, clone RP23-21A23, complete sequence Length = 237001 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tctgctctgctctgctcagc 28 |||||||||||||||||||| Sbjct: 124086 tctgctctgctctgctcagc 124105
>emb|CR391920.11| Zebrafish DNA sequence from clone CH211-213B7 in linkage group 16, complete sequence Length = 199710 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctcccccatccatctccatc 82 |||||||||||||||||||| Sbjct: 149319 ctcccccatccatctccatc 149338
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gcgacgccacgccctgcggc 406 |||||||||||||||||||| Sbjct: 1352678 gcgacgccacgccctgcggc 1352697
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tctgctctgctctgctcagc 28 |||||||||||||||||||| Sbjct: 18356 tctgctctgctctgctcagc 18375
>emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1160F02, complete sequence Length = 139971 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ctctcccccatccatctccatctc 84 ||||||||| |||||||||||||| Sbjct: 106285 ctctcccccctccatctccatctc 106308
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cccatcgccgacgcagccga 223 |||||||||||||||||||| Sbjct: 49866 cccatcgccgacgcagccga 49847
>emb|AL662790.21| Mouse DNA sequence from clone RP23-53E2 on chromosome 11 Contains the 5' end of a novel pseudogene (similar to hypothetical protein TR:Q8C517), 3 novel pseudogenes (similar to hypothetical protein TR:Q8C517) and the 5' end of the Col1a1 gene for pro-collagen type I alpha 1, complete sequence Length = 133405 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcctctcccccatccatctccatc 82 ||||| |||||||||||||||||| Sbjct: 125672 tcctcacccccatccatctccatc 125695
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 tctacctgcttgacgccaagcgcg 350 |||||||||| ||||||||||||| Sbjct: 2736357 tctacctgctggacgccaagcgcg 2736334
>gb|BC112811.1| Bos taurus presenilin 2, mRNA (cDNA clone MGC:137335 IMAGE:8175412), complete cds Length = 2205 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1475 ccctcctgctgctcgccgtg 1494
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ctgcttgacgccaagcgcgc 351 |||||||||||||||||||| Sbjct: 3094302 ctgcttgacgccaagcgcgc 3094283
>gb|AC068327.14| Homo sapiens chromosome 15, clone RP11-394G8, complete sequence Length = 177539 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gctctgctctgctcagcttg 31 |||||||||||||||||||| Sbjct: 154625 gctctgctctgctcagcttg 154606
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gctctgctctgctcagcttg 31 |||||||||||||||||||| Sbjct: 33509 gctctgctctgctcagcttg 33490
>ref|NM_031087.1| Rattus norvegicus presenilin 2 (Psen2), mRNA Length = 2088 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1325 ccctcctgctgctcgccgtg 1344
>ref|NM_174440.3| Bos taurus presenilin 2 (PSEN2), mRNA Length = 2205 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1475 ccctcctgctgctcgccgtg 1494
>emb|AL732483.8| Mouse DNA sequence from clone RP23-70K10 on chromosome 2, complete sequence Length = 201542 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tctgctcagcttgctcagct 38 |||||||||||||||||||| Sbjct: 94015 tctgctcagcttgctcagct 94034
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 cgcgctcaccgcctccgcgctcgc 372 ||||||||||||| |||||||||| Sbjct: 1288366 cgcgctcaccgccgccgcgctcgc 1288343
>gb|AC154711.2| Mus musculus BAC clone RP24-359E16 from chromosome 16, complete sequence Length = 199681 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tcgcttctgctctgctctgc 23 |||||||||||||||||||| Sbjct: 154138 tcgcttctgctctgctctgc 154157
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cccatcgccgacgcagccga 223 |||||||||||||||||||| Sbjct: 23607185 cccatcgccgacgcagccga 23607166 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ctctcccccatccatctccatctc 84 ||||||||| |||||||||||||| Sbjct: 106285 ctctcccccctccatctccatctc 106308
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccccatccatctccatctca 85 |||||||||||||||||||| Sbjct: 22618171 ccccatccatctccatctca 22618152 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagc 28 |||||||||||||||||||| Sbjct: 10960774 tctgctctgctctgctcagc 10960755
>gb|AC093491.3| Homo sapiens chromosome 16 clone RP11-410N2, complete sequence Length = 162176 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 cgcgctcaccgcctccgcgctcgc 372 ||||||||||||| |||||||||| Sbjct: 160779 cgcgctcaccgccgccgcgctcgc 160802
>gb|AC002351.2| Homo sapiens 12 PAC RP1-46F2 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 149679 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ggccgccttcctccccctcc 257 |||||||||||||||||||| Sbjct: 106705 ggccgccttcctccccctcc 106686
>ref|XM_343166.2| PREDICTED: Rattus norvegicus melanoma associated antigen (mutated) 1 (predicted) (Mum1_predicted), mRNA Length = 2935 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgcgcgctcaccgcctccgc 366 |||||||||||||||||||| Sbjct: 302 cgcgcgctcaccgcctccgc 283
>gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296I10, complete sequence Length = 180596 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 cgcgctcaccgcctccgcgctcgc 372 ||||||||||||| |||||||||| Sbjct: 152698 cgcgctcaccgccgccgcgctcgc 152675
>gb|AC092569.2| Homo sapiens BAC clone CTD-2024L7 from 2, complete sequence Length = 139880 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcttctgctctgctctgctc 25 |||||||||||||||||||| Sbjct: 80781 gcttctgctctgctctgctc 80762
>gb|AC009145.4|AC009145 Homo sapiens chromosome 16 clone RP11-556H2, complete sequence Length = 182302 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 gtcctctcccccatccatct 77 |||||||||||||||||||| Sbjct: 16537 gtcctctcccccatccatct 16556
>gb|AC108439.22| Mus musculus chromosome 8, clone RP23-214F1, complete sequence Length = 205732 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tcctccccctcctgctgctc 265 |||||||||||||||||||| Sbjct: 45710 tcctccccctcctgctgctc 45729
>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence Length = 212599 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccatccatctccatctcaat 87 |||||||||||||||||||| Sbjct: 142371 ccatccatctccatctcaat 142390
>dbj|AK105435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F11, full insert sequence Length = 2699 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 atccatctccatctcaataa 89 |||||||||||||||||||| Sbjct: 1542 atccatctccatctcaataa 1523
>dbj|AK070268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E14, full insert sequence Length = 773 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccccatccatctccatctca 85 |||||||||||||||||||| Sbjct: 417 ccccatccatctccatctca 436
>dbj|AK069225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E16, full insert sequence Length = 1268 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ctctcccccatccatctccatctc 84 ||||||||| |||||||||||||| Sbjct: 128 ctctcccccctccatctccatctc 151
>gb|BC078805.1| Rattus norvegicus presenilin 2, mRNA (cDNA clone MGC:93382 IMAGE:7109917), complete cds Length = 1628 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1302 ccctcctgctgctcgccgtg 1321
>gb|AF038937.1|AF038937 Bos taurus presenilin 2 mRNA, complete cds Length = 2004 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1290 ccctcctgctgctcgccgtg 1309
>emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0102C09, complete sequence Length = 72636 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ctctcccccatccatctccatctc 84 ||||||||| |||||||||||||| Sbjct: 53162 ctctcccccctccatctccatctc 53185
>emb|X99267.1|RNX99267 R.norvegicus mRNA for presenilin-2 Length = 2088 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1325 ccctcctgctgctcgccgtg 1344
>gb|AC124095.7| Mus musculus chromosome 1, clone RP23-245G9, complete sequence Length = 198825 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 catctcaataacagcacccaccaa 102 |||||||||| ||||||||||||| Sbjct: 101719 catctcaataccagcacccaccaa 101742
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tctgctctgctctgctcagc 28 |||||||||||||||||||| Sbjct: 7496 tctgctctgctctgctcagc 7477
>emb|AL806514.8| Mouse DNA sequence from clone RP23-18D24 on chromosome 2, complete sequence Length = 206358 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctcagcttgctcagctaccc 42 |||||||||||||||||||| Sbjct: 49982 ctcagcttgctcagctaccc 50001
>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06, complete sequence Length = 145517 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ctctcccccatccatctccatctc 84 ||||||||| |||||||||||||| Sbjct: 37534 ctctcccccctccatctccatctc 37557
>gb|AC140229.3| Mus musculus BAC clone RP24-488O12 from 10, complete sequence Length = 156601 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgcgcgctcaccgcctccgc 366 |||||||||||||||||||| Sbjct: 76868 cgcgcgctcaccgcctccgc 76849
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgacgcccatgtcgccgtcc 156 |||||||||||||||||||| Sbjct: 23991 cgacgcccatgtcgccgtcc 24010
>emb|Z15030.1|HSVMYCLC2 H.sapiens gene for ventricular myosin light chain 2 Length = 11997 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ggccgccttcctccccctcc 257 |||||||||||||||||||| Sbjct: 1371 ggccgccttcctccccctcc 1352
>gb|L01652.1|HUMVMLC Human ventricular myosin light chain 2 gene, seven exons Length = 11997 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ggccgccttcctccccctcc 257 |||||||||||||||||||| Sbjct: 1371 ggccgccttcctccccctcc 1352
>dbj|D83700.1| Rattus norvegicus cDNA for presenilin-2, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1205 ccctcctgctgctcgccgtg 1224
>dbj|AB004454.1| Rattus norvegicus mRNA for presenilin-2, complete cds Length = 1414 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccctcctgctgctcgccgtg 271 |||||||||||||||||||| Sbjct: 1212 ccctcctgctgctcgccgtg 1231 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,381,513 Number of Sequences: 3902068 Number of extensions: 3381513 Number of successful extensions: 98471 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 96769 Number of HSP's gapped (non-prelim): 1701 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
