Clone Name | bastl26h02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 168 bits (85), Expect = 1e-38 Identities = 96/100 (96%) Strand = Plus / Plus Query: 371 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 644700 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 644759 Query: 431 ccgtggctcgtcctnccgctcatcctcctctgggcgctct 470 || ||||| || || ||||||||||||||||||||||||| Sbjct: 644760 ccatggctggtgctcccgctcatcctcctctgggcgctct 644799 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 59 gctagggttttcgccatggccaccgcccacc 89 |||||||||||||||||||| ||| |||||| Sbjct: 644399 gctagggttttcgccatggctaccacccacc 644429 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 11515386 gagaggagaagctagggttt 11515367
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 168 bits (85), Expect = 1e-38 Identities = 96/100 (96%) Strand = Plus / Plus Query: 371 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608951 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 609010 Query: 431 ccgtggctcgtcctnccgctcatcctcctctgggcgctct 470 || ||||| || || ||||||||||||||||||||||||| Sbjct: 609011 ccatggctggtgctcccgctcatcctcctctgggcgctct 609050 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 59 gctagggttttcgccatggccaccgcccacc 89 |||||||||||||||||||| ||| |||||| Sbjct: 608650 gctagggttttcgccatggctaccacccacc 608680
>dbj|AK068644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158J09, full insert sequence Length = 3185 Score = 168 bits (85), Expect = 1e-38 Identities = 96/100 (96%) Strand = Plus / Plus Query: 371 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 390 Query: 431 ccgtggctcgtcctnccgctcatcctcctctgggcgctct 470 || ||||| || || ||||||||||||||||||||||||| Sbjct: 391 ccatggctggtgctcccgctcatcctcctctgggcgctct 430 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 59 gctagggttttcgccatggccaccgcccacc 89 |||||||||||||||||||| ||| |||||| Sbjct: 30 gctagggttttcgccatggctaccacccacc 60
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 168 bits (85), Expect = 1e-38 Identities = 96/100 (96%) Strand = Plus / Plus Query: 371 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608951 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 609010 Query: 431 ccgtggctcgtcctnccgctcatcctcctctgggcgctct 470 || ||||| || || ||||||||||||||||||||||||| Sbjct: 609011 ccatggctggtgctcccgctcatcctcctctgggcgctct 609050 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 59 gctagggttttcgccatggccaccgcccacc 89 |||||||||||||||||||| ||| |||||| Sbjct: 608650 gctagggttttcgccatggctaccacccacc 608680
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 168 bits (85), Expect = 1e-38 Identities = 96/100 (96%) Strand = Plus / Plus Query: 371 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 644700 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 644759 Query: 431 ccgtggctcgtcctnccgctcatcctcctctgggcgctct 470 || ||||| || || ||||||||||||||||||||||||| Sbjct: 644760 ccatggctggtgctcccgctcatcctcctctgggcgctct 644799 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 59 gctagggttttcgccatggccaccgcccacc 89 |||||||||||||||||||| ||| |||||| Sbjct: 644399 gctagggttttcgccatggctaccacccacc 644429 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 11515057 gagaggagaagctagggttt 11515038
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 168 bits (85), Expect = 1e-38 Identities = 96/100 (96%) Strand = Plus / Minus Query: 371 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134021 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 133962 Query: 431 ccgtggctcgtcctnccgctcatcctcctctgggcgctct 470 || ||||| || || ||||||||||||||||||||||||| Sbjct: 133961 ccatggctggtgctcccgctcatcctcctctgggcgctct 133922 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 59 gctagggttttcgccatggccaccgcccacc 89 |||||||||||||||||||| ||| |||||| Sbjct: 134322 gctagggttttcgccatggctaccacccacc 134292
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 168 bits (85), Expect = 1e-38 Identities = 96/100 (96%) Strand = Plus / Minus Query: 371 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4143 cggataatgtgtatactgtgcgccgtgcaacggtggtcgcggcgcgtcgccaccatgctg 4084 Query: 431 ccgtggctcgtcctnccgctcatcctcctctgggcgctct 470 || ||||| || || ||||||||||||||||||||||||| Sbjct: 4083 ccatggctggtgctcccgctcatcctcctctgggcgctct 4044 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 59 gctagggttttcgccatggccaccgcccacc 89 |||||||||||||||||||| ||| |||||| Sbjct: 4444 gctagggttttcgccatggctaccacccacc 4414
>gb|AC122587.5| Rattus norvegicus BAC CH230-173H6 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 202972 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 98 ctccacccctcccccattcccaa 120 ||||||||||||||||||||||| Sbjct: 80196 ctccacccctcccccattcccaa 80174
>gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome 5, complete sequence Length = 187269 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 aagaagaagaaagggggaaaaa 27 |||||||||||||||||||||| Sbjct: 162806 aagaagaagaaagggggaaaaa 162827
>emb|AL445529.14| Human DNA sequence from clone RP11-793K1 on chromosome 6 Cpntains a ribosomal protein S15a (RPS15A) pseudogene, complete sequence Length = 76336 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 aagaagaagaaagggggaaaaa 27 |||||||||||||||||||||| Sbjct: 32858 aagaagaagaaagggggaaaaa 32837
>gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163031 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 88 cctcgagctcctccacccctccccca 113 |||| ||||||||||||||||||||| Sbjct: 42135 cctccagctcctccacccctccccca 42110
>ref|NM_006160.2| Homo sapiens neurogenic differentiation 2 (NEUROD2), mRNA Length = 2019 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 1635 cacccctcccccattcccaat 1655
>emb|BX088650.9| Human DNA sequence from clone DASS-97D12 on chromosome 6, complete sequence Length = 92518 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ggcaagaagaagaaaggggga 23 ||||||||||||||||||||| Sbjct: 46044 ggcaagaagaagaaaggggga 46024
>emb|AL662799.16| Human DNA sequence from clone XXbac-294E21 on chromosome 6 contains the gene for a novel protein similar to lysophospholipase II (LYPLA2), the KNSL2 gene for kinesin-like 2, the PHF1 gene for PHD finger protein 1, the gene for divalent cation tolerant protein CUTA, the SYNGAP1 gene for synaptic Ras GTPase activating protein 1 homolog and five CpG islands, complete sequence Length = 136021 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ggcaagaagaagaaaggggga 23 ||||||||||||||||||||| Sbjct: 86439 ggcaagaagaagaaaggggga 86419
>emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on chromosome 13, complete sequence Length = 132436 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 agaagaaagggggaaaaatcg 30 ||||||||||||||||||||| Sbjct: 126932 agaagaaagggggaaaaatcg 126912
>emb|AL050332.15|HSDJ570F3 Human DNA sequence from clone RP4-570F3 on chromosome 6 Contains the 5' end of the SYNGAP1 gene for synaptic Ras GTPase activating protein 1 homolog (rat), gene LOC51596 for divalent cation tolerant protein CUTA or brain acetylcholinesterase putative membrane anchor, the PHF1 gene for PHD finger protein 1, the KNSL2 gene for kinesin-like protein 2, a ribosomal protein L12 pseudogene (RPL12P1), a lysophospholipase II (LYPLA2) pseudogene and four CpG islands, complete sequence Length = 94770 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggcaagaagaagaaaggggga 23 ||||||||||||||||||||| Sbjct: 11560 ggcaagaagaagaaaggggga 11580
>emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, complete sequence Length = 164576 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 132260 cacccctcccccattcccaat 132240
>gb|BC022481.1| Homo sapiens neurogenic differentiation 2, mRNA (cDNA clone MGC:26304 IMAGE:4816285), complete cds Length = 2019 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 1635 cacccctcccccattcccaat 1655
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aagaagaagaaagggggaaaa 26 ||||||||||||||||||||| Sbjct: 103477 aagaagaagaaagggggaaaa 103497
>gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, complete sequence Length = 157216 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 35763 cacccctcccccattcccaat 35743
>emb|CR624963.1| full-length cDNA clone CS0DF008YN08 of Fetal brain of Homo sapiens (human) Length = 1938 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 1586 cacccctcccccattcccaat 1606
>emb|CR590531.1| full-length cDNA clone CS0DF027YM01 of Fetal brain of Homo sapiens (human) Length = 1950 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 1617 cacccctcccccattcccaat 1637
>dbj|AB224102.1| Aspergillus oryzae cDNA, contig sequence: AoEST0944 Length = 971 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 agaagaagaaagggggaaaaa 27 ||||||||||||||||||||| Sbjct: 577 agaagaagaaagggggaaaaa 557
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 agaagaagaaagggggaaaaa 27 ||||||||||||||||||||| Sbjct: 1785024 agaagaagaaagggggaaaaa 1785004
>dbj|AB021742.1| Homo sapiens NDRF mRNA for neuroD-related factor, complete cds Length = 6246 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 4613 cacccctcccccattcccaat 4633
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aagaagaagaaagggggaaaa 26 ||||||||||||||||||||| Sbjct: 21668935 aagaagaagaaagggggaaaa 21668955 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 32356511 gagaggagaagctagggttt 32356492 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 32091148 gagaggagaagctagggttt 32091129 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 4339930 gagaggagaagctagggttt 4339911
>gb|U58681.1|HSU58681 Homo sapiens neurogenic basic-helix-loop-helix protein (NeuroD2) gene, complete cds Length = 1550 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 cacccctcccccattcccaat 121 ||||||||||||||||||||| Sbjct: 1491 cacccctcccccattcccaat 1511
>gb|L24391.1|ASTDBP Arena sativa DNA binding protein (PF-1) mRNA, complete cds Length = 960 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 gagggctttggcggcggcggt 370 ||||||||||||||||||||| Sbjct: 408 gagggctttggcggcggcggt 388
>gb|BT020513.1| Arabidopsis thaliana At5g24520 gene, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 550 ggagaagctagggttttcgc 569
>ref|NM_122360.2| Arabidopsis thaliana TTG1 (TRANSPARENT TESTA GLABRA 1); nucleotide binding AT5G24520 (TTG1) transcript variant AT5G24520.3 mRNA, complete cds Length = 1491 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 664 ggagaagctagggttttcgc 683
>ref|NM_180739.2| Arabidopsis thaliana TTG1 (TRANSPARENT TESTA GLABRA 1); nucleotide binding AT5G24520 (TTG1) transcript variant AT5G24520.2 mRNA, complete cds Length = 1436 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 664 ggagaagctagggttttcgc 683
>ref|NM_180738.2| Arabidopsis thaliana TTG1 (TRANSPARENT TESTA GLABRA 1); nucleotide binding AT5G24520 (TTG1) transcript variant AT5G24520.1 mRNA, complete cds Length = 1561 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 664 ggagaagctagggttttcgc 683
>gb|BT020231.1| Arabidopsis thaliana At5g24520 gene, complete cds Length = 1254 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 604 ggagaagctagggttttcgc 623
>gb|AC150788.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073C10, complete sequence Length = 165350 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 3686 gagaggagaagctagggttt 3667
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 ggcgctggcgatcgagctcc 345 |||||||||||||||||||| Sbjct: 25791 ggcgctggcgatcgagctcc 25810
>gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, complete sequence Length = 198590 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 gagctcctccacccctcccccatt 115 |||||||||| ||||||||||||| Sbjct: 27333 gagctcctcctcccctcccccatt 27310
>ref|XM_607249.2| PREDICTED: Bos taurus similar to Neurogenic differentiation factor 2 (NeuroD2) (Brain bHLH protein KW8) (LOC528817), mRNA Length = 1793 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 acccctcccccattcccaat 121 |||||||||||||||||||| Sbjct: 1440 acccctcccccattcccaat 1459
>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0027N19, complete sequence Length = 141368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 126729 gagaggagaagctagggttt 126710
>gb|BT011856.1| Arabidopsis thaliana At5g24520 mRNA sequence Length = 1023 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 547 ggagaagctagggttttcgc 566
>ref|XM_751925.1| Ustilago maydis 521 hypothetical protein (UM00871.1) partial mRNA Length = 3090 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 aagctagggttttcgccatg 76 |||||||||||||||||||| Sbjct: 3065 aagctagggttttcgccatg 3084
>ref|XM_389862.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09686.1) partial mRNA Length = 2094 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 tggtcgcggcgcgtcgccaccatg 427 ||||||||||||| |||||||||| Sbjct: 1992 tggtcgcggcgcgccgccaccatg 1969
>gb|AC121986.2| Mus musculus BAC clone RP24-293I7 from 10, complete sequence Length = 182686 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gaagaagaaagggggaaaaa 27 |||||||||||||||||||| Sbjct: 131113 gaagaagaaagggggaaaaa 131094
>ref|XM_760877.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0443) partial mRNA Length = 798 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 aatcgaaggaaattaaacaa 45 |||||||||||||||||||| Sbjct: 635 aatcgaaggaaattaaacaa 654
>gb|AC148178.35| Medicago truncatula clone mth2-5b21, complete sequence Length = 115185 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 gaaagggggaaaaatcgaaggaaa 37 ||||||||||||||| |||||||| Sbjct: 16556 gaaagggggaaaaatagaaggaaa 16579
>emb|AL606497.4| Human DNA sequence from clone RP13-35O24 on chromosome X, complete sequence Length = 8223 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagaagaagaaagggggaaa 25 |||||||||||||||||||| Sbjct: 217 aagaagaagaaagggggaaa 198
>emb|AL513013.12| Human DNA sequence from clone RP5-990P15 on chromosome 1 Contains the 5' end of a novel gene, a novel gene (DKFZp564J047), two novel genes and a CpG island, complete sequence Length = 77001 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 gcaagaagaagaaagggggaaaaa 27 ||||||| |||||||||||||||| Sbjct: 74522 gcaagaaaaagaaagggggaaaaa 74499
>emb|AL355520.8| Human DNA sequence from clone RP4-595C2 on chromosome 1q24.1-25.3 Contains the 3' end of the gene for Ral-A exchange factor RalGPS2 and the ANGPTL1 gene for angiopoietin-like 1, complete sequence Length = 157575 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gaagaagaaagggggaaaaa 27 |||||||||||||||||||| Sbjct: 121477 gaagaagaaagggggaaaaa 121496
>emb|AL136111.10| Human DNA sequence from clone RP13-73G13 on chromosome X Contains GSSs, complete sequence Length = 68759 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagaagaagaaagggggaaa 25 |||||||||||||||||||| Sbjct: 66976 aagaagaagaaagggggaaa 66957
>gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, complete sequence Length = 153860 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ggcaagaagaagaaagggggaaaa 26 ||||||||||||| |||||||||| Sbjct: 129763 ggcaagaagaagagagggggaaaa 129786
>gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8, complete sequence Length = 172253 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gaagaagaaagggggaaaaa 27 |||||||||||||||||||| Sbjct: 19127 gaagaagaaagggggaaaaa 19108
>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09, complete sequence Length = 159502 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 126094 gagaggagaagctagggttt 126075
>dbj|BS000648.1| Pan troglodytes chromosome Y clone:PTB-526G10, complete sequences Length = 135606 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagaagaagaaagggggaaa 25 |||||||||||||||||||| Sbjct: 122601 aagaagaagaaagggggaaa 122582
>emb|AJ586862.1| Matthiola incana partial ttg1 gene for transparenta testa glabra 1 protein, exons 1-2, strain 17 Length = 1981 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 340 ggagaagctagggttttcgc 359
>emb|AJ586861.1| Matthiola incana partial ttg1 gene for transparenta testa glabra 1 protein, exons 1-2, strain 04 Length = 2155 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 514 ggagaagctagggttttcgc 533
>gb|AC146691.5| Macaca mulatta clone ch250-214a10, complete sequence Length = 152056 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 9 aagaagaaagggggaaaaatcgaaggaa 36 |||||||||||| ||||||| ||||||| Sbjct: 126062 aagaagaaagggagaaaaatggaaggaa 126035
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gaaaaatcgaaggaaattaa 41 |||||||||||||||||||| Sbjct: 468690 gaaaaatcgaaggaaattaa 468671
>gb|AY013285.1| Meloidogyne artiellia chitin synthase gene, complete cds Length = 11155 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aagaagaagaaagggggaaa 25 |||||||||||||||||||| Sbjct: 3065 aagaagaagaaagggggaaa 3084
>dbj|AK048555.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130073J24 product:unclassifiable, full insert sequence Length = 3914 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ctcctccacccctcccccattccc 118 |||||||| ||||||||||||||| Sbjct: 2394 ctcctccatccctcccccattccc 2417
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 28874151 gagaggagaagctagggttt 28874170
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 3805799 gagaggagaagctagggttt 3805780
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 25262971 gagaggagaagctagggttt 25262990
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 25566120 gagaggagaagctagggttt 25566101
>emb|AL606603.3|OSJN00040 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence Length = 127117 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 87798 gagaggagaagctagggttt 87779
>emb|BX830220.1|CNS0A18T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1346 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 643 ggagaagctagggttttcgc 662
>emb|BX832324.1|CNS0A158 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1284 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 625 ggagaagctagggttttcgc 644
>emb|BX831455.1|CNS0A0UO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS92ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1386 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 635 ggagaagctagggttttcgc 654
>emb|BX831165.1|CNS0A0UA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS63ZD03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1303 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 627 ggagaagctagggttttcgc 646
>emb|BX830656.1|CNS0A0Q5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS10ZE09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1307 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 632 ggagaagctagggttttcgc 651
>dbj|AB117764.1| Arabidopsis thaliana AT5G24520.1 gene for mutant protein of TTG1, complete cds, allele: ttg1-26 Length = 2753 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 1355 ggagaagctagggttttcgc 1374
>dbj|AB117763.1| Arabidopsis thaliana AT5G24520.1 gene for mutant protein of TTG1, complete cds, allele: ttg1-25 Length = 2752 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 1356 ggagaagctagggttttcgc 1375
>dbj|AB117762.1| Arabidopsis thaliana AT5G24520.1 gene for mutant protein of TTG1, complete cds, allele: ttg1-24 Length = 2749 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 1351 ggagaagctagggttttcgc 1370
>dbj|AB117761.1| Arabidopsis thaliana AT5G24520.1 gene for mutant protein of TTG1, complete cds, allele: ttg1-23 Length = 2753 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 1355 ggagaagctagggttttcgc 1374
>gb|AC115775.12| Mus musculus chromosome 8, clone RP23-125P1, complete sequence Length = 189510 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagaagaagaaagggggaaa 25 |||||||||||||||||||| Sbjct: 4999 aagaagaagaaagggggaaa 4980
>gb|AC011305.2|AC011305 Homo sapiens BAC clone RP11-390E9 from Y, complete sequence Length = 69485 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagaagaagaaagggggaaa 25 |||||||||||||||||||| Sbjct: 42168 aagaagaagaaagggggaaa 42149
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 12926 gagaggagaagctagggttt 12907
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696E01 Length = 194056 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 93723 gagaggagaagctagggttt 93704
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 24195 gagaggagaagctagggttt 24214
>dbj|AP006452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1250G12 Length = 144590 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 30122 gagaggagaagctagggttt 30141
>dbj|AB010068.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18P6 Length = 74589 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 6549 ggagaagctagggttttcgc 6530
>ref|XM_561521.1| Anopheles gambiae str. PEST ENSANGP00000028107 (ENSANGG00000022232), partial mRNA Length = 1680 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccacctcgagctcctccacc 104 |||||||||||||||||||| Sbjct: 1397 ccacctcgagctcctccacc 1416
>emb|AJ251523.1|ATH251523 Arabidopsis thaliana ecotype Estland ttg1 gene for transparent testa glabra 1, exons 1-2 hlm mutant allele Length = 2051 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 646 ggagaagctagggttttcgc 665
>emb|AJ251522.1|ATH251522 Arabidopsis thaliana ecotype Estland TTG1 gene for transparent testa glabra 1, exons 1-2 wild type allele Length = 2034 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 629 ggagaagctagggttttcgc 648
>emb|AJ133743.1|ATH133743 Arabidopsis thaliana ttg1 gene Length = 5777 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 3930 ggagaagctagggttttcgc 3949
>gb|AC109163.16| Mus musculus chromosome 8, clone RP24-174F12, complete sequence Length = 189849 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagaagaagaaagggggaaa 25 |||||||||||||||||||| Sbjct: 162612 aagaagaagaaagggggaaa 162593
>dbj|D90360.1|MUSCYTK Mus musculus gene for cytokeratin endo A, complete cds Length = 10247 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccacccctcccccattccca 119 |||||||||||||||||||| Sbjct: 7372 ccacccctcccccattccca 7353
>emb|AL928594.11| Mouse DNA sequence from clone RP23-35H8 on chromosome X, complete sequence Length = 204635 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gaagaagaaagggggaaaaa 27 |||||||||||||||||||| Sbjct: 21375 gaagaagaaagggggaaaaa 21356
>emb|AL732650.5|CNS08C9P Oryza sativa chromosome 12, . BAC OSJNBa0054O08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167806 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 21578 gagaggagaagctagggttt 21597
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gagaggagaagctagggttt 68 |||||||||||||||||||| Sbjct: 111855 gagaggagaagctagggttt 111836
>emb|AJ875188.1| Malcolmia flexuosa subsp. naxensis partial ttg1 gene for transparent testa glabra protein 1 Length = 737 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 319 ggagaagctagggttttcgc 338
>emb|AJ875187.1| Matthiola tricuspidata partial ttg1 gene for transparent testa glabra 1 protein Length = 737 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggagaagctagggttttcgc 72 |||||||||||||||||||| Sbjct: 319 ggagaagctagggttttcgc 338
>emb|AL732478.7| Mouse DNA sequence from clone RP23-42N14 on chromosome 2, complete sequence Length = 203434 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ctcctccacccctcccccattccc 118 |||||||| ||||||||||||||| Sbjct: 66540 ctcctccatccctcccccattccc 66563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,577,838 Number of Sequences: 3902068 Number of extensions: 4577838 Number of successful extensions: 87908 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87012 Number of HSP's gapped (non-prelim): 896 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)