ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl26g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NIFK_ANASP (P00468) Nitrogenase molybdenum-iron protein beta cha... 30 1.1
2PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor (Po... 29 3.2
3PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor (Po... 29 3.2
4PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor (Po... 29 3.2
5PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor (Polyg... 28 5.4
6PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor (Po... 28 7.0
7ZHX2_HUMAN (Q9Y6X8) Zinc fingers and homeoboxes protein 2 (Zinc ... 28 7.0
8MS3L1_MOUSE (Q9WVG9) Male-specific lethal 3-like 1 (MSL3-like 1)... 28 7.0
9MS3L1_HUMAN (Q8N5Y2) Male-specific lethal 3-like 1 (MSL3-like 1)... 28 7.0
10CYB_LEITA (P14548) Cytochrome b 28 7.0
11RET_HUMAN (P07949) Proto-oncogene tyrosine-protein kinase recept... 27 9.2

>NIFK_ANASP (P00468) Nitrogenase molybdenum-iron protein beta chain (EC|
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase)
          Length = 512

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 22  NFASAPTPEPESRNNSWLRELLIQDKESERQEISIRPKKSCK 147
           NF  A  PE   R + W +    ++K   R+ +++ P K C+
Sbjct: 30  NFEGAHPPEEVERVSEWTKSWDYREKNFAREALTVNPAKGCQ 71



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>PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP-3)
          Length = 342

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 246 PSQSWSLFKLRQLLGDPPVLGTWLNYTDFC 335
           P    +L ++++ LG+P  L +WL  TD C
Sbjct: 34  PQDKQALLQIKKDLGNPTTLSSWLPTTDCC 63



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>PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 342

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 246 PSQSWSLFKLRQLLGDPPVLGTWLNYTDFC 335
           P    +L ++++ LG+P  L +WL  TD C
Sbjct: 34  PQDKQALLQIKKDLGNPTTLSSWLPTTDCC 63



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>PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-1)
          Length = 342

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 246 PSQSWSLFKLRQLLGDPPVLGTWLNYTDFC 335
           P    +L ++++ LG+P  L +WL  TD C
Sbjct: 34  PQDKQALLQIKKDLGNPTTLSSWLPTTDCC 63



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>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor|
           (Polygalacturonase-inhibiting protein)
          Length = 330

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 246 PSQSWSLFKLRQLLGDPPVLGTWLNYTDFC 335
           P     L ++++  GDP VL +W + TD C
Sbjct: 29  PDDKKVLLQIKKAFGDPYVLASWKSDTDCC 58



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>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (Floral organ
           regulator 1)
          Length = 332

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 246 PSQSWSLFKLRQLLGDPPVLGTW-LNYTDFC 335
           PS   +L +++Q LG+P  L TW L   D C
Sbjct: 29  PSDKQALMRVKQSLGNPATLSTWSLASADCC 59



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>ZHX2_HUMAN (Q9Y6X8) Zinc fingers and homeoboxes protein 2 (Zinc finger and|
           homeodomain protein 2) (Alpha-fetoprotein regulator 1)
           (AFP regulator 1) (Regulator of AFP)
          Length = 837

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 40  TPEPESRNNSWLRELLIQDKESERQEISIRPKKSCKK 150
           TP+P+   +SW  EL    KE+E  E+    +   KK
Sbjct: 37  TPQPDVAKDSWAAELENSSKENEVIEVKSMGESQSKK 73



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>MS3L1_MOUSE (Q9WVG9) Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific|
           lethal-3 homolog 1)
          Length = 525

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 KDKRLASGPRNLVKKNGWNNPWPRPWSA 190
           KD++    P  L+  NGWN  W R W+A
Sbjct: 42  KDEKGRKIPEYLIHFNGWNRSWDR-WAA 68



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>MS3L1_HUMAN (Q8N5Y2) Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific|
           lethal-3 homolog 1)
          Length = 521

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 KDKRLASGPRNLVKKNGWNNPWPRPWSA 190
           KD++    P  L+  NGWN  W R W+A
Sbjct: 42  KDEKGRKIPEYLIHFNGWNRSWDR-WAA 68



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>CYB_LEITA (P14548) Cytochrome b|
          Length = 371

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 258 WSLFKLRQLLGDPPVLGTWLNYTDFCYGGDY 350
           W L     +L   PV+GTWL Y  + +G +Y
Sbjct: 142 WGLTVFSNILATVPVIGTWLCY--WIWGSEY 170



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>RET_HUMAN (P07949) Proto-oncogene tyrosine-protein kinase receptor ret|
           precursor (EC 2.7.10.1) (C-ret)
          Length = 1114

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 316 SQVPSTGGSPRSCRSLKRDQDCEGCSGV 233
           S V    G P SC   KR  +CE C G+
Sbjct: 507 SYVAEEAGCPLSCAVSKRRLECEECGGL 534


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,342,965
Number of Sequences: 219361
Number of extensions: 686598
Number of successful extensions: 2416
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2416
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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