>PCP_YEREN (P31484) Outer membrane lipoprotein pcp precursor|
          Length = 155

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
 Frame = -2

Query: 264 LGGDTASRRGRSGGTAKRRTVGGEAKVGKKAAEHRSDG--------DGVAQ*EVEAMSES 109
           LG       GRS  TA     GG A  G + A +R+DG        DG     V+    +
Sbjct: 74  LGNTVGGGTGRSLATAAGAVAGGMAGQGVQGAMNRTDGVQLEVRKDDGTTILVVQKQGPT 133

Query: 108 RWRGPEAVLLLSHSSCLIVS 49
           R+   + V+L S  S + VS
Sbjct: 134 RFSVGQRVMLASSGSTVTVS 153

>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 143 TPSPSLRCSAAFFPTFASPPTVLRFAVPPLLPRRLA---VSP-PRIRIPAVASAL 295
           TPSPS          F SPP     A PPL+PRR A   V P P +  P + S L
Sbjct: 245 TPSPSPAAEPPIIAPFPSPP-----ANPPLIPRRPAPPVVKPLPPLGKPPIVSGL 294

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = -2

Query: 291 AEATAGIRILGGDTASRRGRSGGTAKRRTVGGEAKVGKKAAEHRSDGDG 145
           A  +A  R  GG    R GR  G  +RR  G EA      AE   DGDG
Sbjct: 299 AGGSARRRRRGGGPPGRGGRRRGGKRRRAEGTEAAAAD--AEEEEDGDG 345

>CSPG2_MOUSE (Q62059) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M)
          Length = 3358

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 140  ATPSPSLRCSAAFFPTFASPPTVL 211
            +TPSPS+  S++F PT  +P TVL
Sbjct: 1841 STPSPSVEISSSFEPTGLTPSTVL 1864

>RCOR2_BRARE (Q6P116) REST corepressor 2|
          Length = 536

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +2

Query: 98  PRHRDSLMASTSYCATPSPSLRCSAAFFPTFASPPTVLRFAVPPLLPRRLAVSPP 262
           P H DS + S+   A+ + S   SA   P    PP +LR A P   P  L   PP
Sbjct: 423 PPHSDSPLPSSEGSASGNHS---SAQSSPPLTQPPPLLRPAPPSAPPSLLRQPPP 474

>T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2) (Tsc-22-like protein THG-1)
          Length = 395

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
 Frame = +2

Query: 8   NPGPSERGGTGATRETMRQLE*DRSS---TASGPRHRD-----SLMASTSYCATPSPSLR 163
           +PGP  R  TG   + +   +        +AS P+ R         A TS  ATP PSLR
Sbjct: 158 SPGPQARSFTGGLGQLVVPSKAKAEKPPLSASSPQQRPPEPETGESAGTSRAATPLPSLR 217

Query: 164 CSAAFFPTFA-SPPTVLRFAVPPLLPRRLAVSPPRIRIPAVAS 289
             A    + A +PP   R AV   L   L       ++P + S
Sbjct: 218 VEAEAGGSGARTPPLSRRKAVDMRLRMELGAPEEMGQVPPLDS 260

>PARM1_HUMAN (Q6UWI2) Protein PARM-1 precursor|
          Length = 310

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +2

Query: 83  STASGPRHRDSLMASTSYCATPSPSLRCSAAFFPTFASPPTVLRFAVPPLLPRRLAVSPP 262
           S+ SG  H  + +   S   + +P    +A    + A PPT++    P   P  L+ SPP
Sbjct: 110 SSTSGGVHLTTTLEEHS---SGTPEAGVAATLSQSAAEPPTLISPQAPASSPSSLSTSPP 166

Query: 263 RIRIPAVASALESLV 307
            +   +V +   S V
Sbjct: 167 EVFSASVTTNHSSTV 181

>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)|
          Length = 320

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 146 PSPSLRCSAAFFPTFASPPTVLRFAVPPLLPRRLAVSPPRIRIPAVASA 292
           P+  L  S    P    PP +   AVPP  PRR   +P    +PA  SA
Sbjct: 126 PAHGLHASHVLQPQ--PPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSA 172

>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter|
          Length = 529

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 22  GEGRYWGNPGDDEAARVR*KQHSFRPSPSRFTHG 123
           GE +YW NP DDE       Q +   SP+R ++G
Sbjct: 488 GERQYWDNPEDDEQKPA--LQTTVTTSPARLSNG 519

>SLYB_SALTY (P0A1X0) Outer membrane lipoprotein slyB precursor|
          Length = 155

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
 Frame = -2

Query: 264 LGGDTASRRGRSGGTAKRRTVGGEAKVGKKAAEHRSDG--------DGVAQ*EVEAMSES 109
           LG       GRS  TA     GG A  G ++A +++ G        DG     V+    +
Sbjct: 74  LGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNT 133

Query: 108 RWRGPEAVLLLSHSSCLIVS 49
           R+   + V+L S+ S + VS
Sbjct: 134 RFSAGQRVVLASNGSQVTVS 153

>SLYB_SALTI (P0A1X1) Outer membrane lipoprotein slyB precursor|
          Length = 155

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
 Frame = -2

Query: 264 LGGDTASRRGRSGGTAKRRTVGGEAKVGKKAAEHRSDG--------DGVAQ*EVEAMSES 109
           LG       GRS  TA     GG A  G ++A +++ G        DG     V+    +
Sbjct: 74  LGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNT 133

Query: 108 RWRGPEAVLLLSHSSCLIVS 49
           R+   + V+L S+ S + VS
Sbjct: 134 RFSAGQRVVLASNGSQVTVS 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,271,318
Number of Sequences: 219361
Number of extensions: 901106
Number of successful extensions: 3452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3449
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)