>HA11_RAT (P15978) Class I histocompatibility antigen, Non-RT1.A alpha-1|
           chain precursor
          Length = 319

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E  ++
Sbjct: 237 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPEPLSQ 296

Query: 346 PWRTEPT 366
            W   P+
Sbjct: 297 RWEPSPS 303

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 102 FFSPFPHGTCTLSVIEEYLGLEG 34
           FFS F H TC+LSV  +YL L+G
Sbjct: 22  FFSSFHHCTCSLSVSRQYLALDG 44

>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 102 FFSPFPHGTCTLSVIEEYLGLEG 34
           FFS F H TC+LSV  +YL L+G
Sbjct: 37  FFSSFHHCTCSLSVSRQYLALDG 59

>HA12_RAT (P16391) RT1 class I histocompatibility antigen, AA alpha chain|
           precursor
          Length = 371

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + +  ++
Sbjct: 237 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPKPLSQ 296

Query: 346 PWRTEPT 366
            W   P+
Sbjct: 297 RWEPSPS 303

>HA1A_BOVIN (P13752) BOLA class I histocompatibility antigen, alpha chain BL3-6|
           precursor
          Length = 360

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +1

Query: 202 HDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNRPWR-TE 360
           HDG  +  +  L   +P G G FQ+W   V+P   E   T R  HE ++E     W   +
Sbjct: 240 HDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGDEQRYTCRVQHEGLQEPLTLRWEPPQ 299

Query: 361 PTYV 372
           P+++
Sbjct: 300 PSFL 303

>HA18_MOUSE (P14430) H-2 class I histocompatibility antigen, Q8 alpha chain|
           precursor
          Length = 326

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T   +HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293

Query: 346 PWRTEPTYVA 375
            W   P+ V+
Sbjct: 294 RWEPPPSTVS 303

>HA1L_MOUSE (P01897) H-2 class I histocompatibility antigen, L-D alpha chain|
           precursor
          Length = 362

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E    
Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 296

Query: 346 PWRTEPT 366
            W   P+
Sbjct: 297 RWEPPPS 303

>HA11_MOUSE (P01899) H-2 class I histocompatibility antigen, D-B alpha chain|
           precursor (H-2D(B))
          Length = 362

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E    
Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 296

Query: 346 PWRTEPT 366
            W   P+
Sbjct: 297 RWEPPPS 303

>HA1Z_MOUSE (P01896) H-2 class I histocompatibility antigen, alpha chain (Clone|
           PH-2D-2) (Fragment)
          Length = 185

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E    
Sbjct: 47  ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 106

Query: 346 PWRTEPT 366
            W   P+
Sbjct: 107 RWEPPPS 113

>HA10_MOUSE (P01898) H-2 class I histocompatibility antigen, Q10 alpha chain|
           precursor
          Length = 322

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTL 293

Query: 346 PWRTEP---TYVAKYGDDLWLGVK 408
            W   P   + ++   D LW  +K
Sbjct: 294 RWEPPPSTDSIMSHIADLLWPSLK 317

>HA19_CANFA (P18466) DLA class I histocompatibility antigen, A9/A9 alpha chain|
           precursor
          Length = 362

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +1

Query: 238 KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNRPWRTEP 363
           +P G G FQ+W   V+P   E   T    HE + E   R W   P
Sbjct: 259 RPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPEPITRRWEPSP 303

>HA1D_MOUSE (P01902) H-2 class I histocompatibility antigen, K-D alpha chain|
           precursor (H-2K(D))
          Length = 368

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + E    
Sbjct: 234 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTL 293

Query: 346 PWRTEPTYVA 375
            W+  P+ V+
Sbjct: 294 RWKLPPSTVS 303

>HA15_MOUSE (P06339) H-2 class I histocompatibility antigen, D-37 alpha chain|
           precursor
          Length = 357

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 233 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWAAVVVPLGKEQYYTCHVYHEGLPEPLTL 292

Query: 346 PWRTEPTYVA 375
            W   P+ V+
Sbjct: 293 RWEPPPSTVS 302

>HA14_MOUSE (P14427) H-2 class I histocompatibility antigen, D-P alpha chain|
           precursor (H-2D(P))
          Length = 368

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWAALVVPLGKEQNYTCHVEHEGLPEPLTL 293

Query: 346 PWRTEPT 366
            W   P+
Sbjct: 294 RWEPPPS 300

>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)|
           (SAP90/PSD-95-associated protein 3) (SAPAP3)
           (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 174 ARAP-LLRLIVRIGSQVLYCTPRLGFFSPFPHGTCTLSVIEEYLGLEGGP 28
           ARAP LL       ++  +C PR G     P G  +LS     +G EGGP
Sbjct: 29  ARAPYLLGSREAFSTEPRFCAPRAGLGHLSPEGPLSLSEGPSSVGPEGGP 78

>DLGP3_MOUSE (Q6PFD5) Disks large-associated protein 3 (DAP-3)|
           (SAP90/PSD-95-associated protein 3) (SAPAP3)
           (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 174 ARAP-LLRLIVRIGSQVLYCTPRLGFFSPFPHGTCTLSVIEEYLGLEGGP 28
           ARAP LL       ++  +C PR G     P G  +LS     +G EGGP
Sbjct: 29  ARAPYLLGSREAFSTEPRFCAPRAGLGHLSPEGPLSLSEGPSSVGPEGGP 78

>ZP2_MOUSE (P20239) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
          Length = 713

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 141 IGSQVLYCTPRLG---FFSPFPHGTCTLSVIEEY 49
           +GS++L CT  L    F   FP+ TCT+ V+  Y
Sbjct: 77  LGSEILNCTYALDLERFVLKFPYETCTIKVVGGY 110

>AMPL_MOUSE (Q9CPY7) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline
           aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase)
          Length = 487

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 136 SDANNQSKERSAGALTLTAYLSHDGSARKW 225
           +D NN  K RSAGA T  A+L    +  KW
Sbjct: 416 ADVNNLGKYRSAGACTAAAFLREFVTHTKW 445

>HA1B_BOVIN (P13753) BOLA class I histocompatibility antigen, alpha chain BL3-7|
           precursor
          Length = 364

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 238 KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNRPWRTEPT 366
           +P G G FQ+W   V+P   E   T R  HE ++E     W    T
Sbjct: 261 RPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQT 306

>HA13_MOUSE (P14426) H-2 class I histocompatibility antigen, D-K alpha chain|
           precursor (H-2D(K))
          Length = 362

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTL 296

Query: 346 PWRTEPT 366
            W   P+
Sbjct: 297 RWEPPPS 303

>HA12_MOUSE (P01900) H-2 class I histocompatibility antigen, D-D alpha chain|
           precursor (H-2D(D))
          Length = 365

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   ++ E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 237 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTL 296

Query: 346 PWRTE 360
            W  E
Sbjct: 297 RWGKE 301

>AMPL_HUMAN (P28838) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline
           aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase)
           (Peptidase S)
          Length = 487

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 136 SDANNQSKERSAGALTLTAYLSHDGSARKW 225
           +D NN  K RSAGA T  A+L    +  KW
Sbjct: 416 ADVNNIGKYRSAGACTAAAFLKEFVTHPKW 445

>AMPL_BOVIN (P00727) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline
           aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase)
          Length = 487

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 136 SDANNQSKERSAGALTLTAYLSHDGSARKW 225
           +D NN  K RSAGA T  A+L    +  KW
Sbjct: 416 ADVNNIGKYRSAGACTAAAFLKEFVTHPKW 445

>1C17_HUMAN (Q95604) HLA class I histocompatibility antigen, Cw-17 alpha chain|
           precursor (MHC class I antigen Cw*17)
          Length = 372

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = +1

Query: 184 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +T     DG  +  +  L   +P G G FQ+W   V+P   E   T    HE ++E    
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLQEPCTL 296

Query: 346 PWR--TEPT 366
            W+  ++PT
Sbjct: 297 RWKPSSQPT 305

>HA17_MOUSE (P14429) H-2 class I histocompatibility antigen, Q7 alpha chain|
           precursor (QA-2 antigen)
          Length = 334

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T   +HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293

Query: 346 PW-RTEP 363
            W R EP
Sbjct: 294 RWGRWEP 300

>HA1Y_MOUSE (P01895) H-2 class I histocompatibility antigen, alpha chain (Clone|
           PAG64) (Fragment)
          Length = 298

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   ++ E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 170 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTL 229

Query: 346 PWRTE 360
            W  E
Sbjct: 230 RWGKE 234

>HA1K_MOUSE (P04223) H-2 class I histocompatibility antigen, K-K alpha chain|
           precursor (H-2K(K))
          Length = 369

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTL 293

Query: 346 PWRTEPTYVA 375
            W   P+ V+
Sbjct: 294 RWEPPPSTVS 303

>1C07_HUMAN (P10321) HLA class I histocompatibility antigen, Cw-7 alpha chain|
           precursor (MHC class I antigen Cw*7)
          Length = 366

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +1

Query: 184 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +T     DG  +  +  L   +P G G FQ+W   V+P   E   T    HE ++E    
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTL 296

Query: 346 PWR--TEPT 366
            W   ++PT
Sbjct: 297 SWEPSSQPT 305

>HA1B_MOUSE (P01901) H-2 class I histocompatibility antigen, K-B alpha chain|
           precursor (H-2K(B))
          Length = 369

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 178 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 345
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + E    
Sbjct: 234 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTL 293

Query: 346 PWRTEPTYVA 375
            W   P+ V+
Sbjct: 294 RWEPPPSTVS 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,848,846
Number of Sequences: 219361
Number of extensions: 1454931
Number of successful extensions: 3677
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3672
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)