ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl26g04 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 202 bits (513), Expect = 3e-52 Identities = 101/102 (99%), Positives = 101/102 (99%) Frame = +1 Query: 109 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISST 288 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG GEFLGKGVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 289 AVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 AVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE Sbjct: 61 AVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 102
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 174 bits (440), Expect = 9e-44 Identities = 84/102 (82%), Positives = 96/102 (94%), Gaps = 1/102 (0%) Frame = +1 Query: 112 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISSTA 291 +LGG+IDT+TG++K +RLKGTVVLMRKNVLDLNDFGAT+IDG GEFLGKGVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 292 VDQDNGGRGKVGAEAELEQWVT-SLPSLTTGESKFGLTFDWE 414 VD +NG RGKVGAEA LEQW+T SLPSLTTGES+FG+TFDW+ Sbjct: 61 VDPNNGNRGKVGAEASLEQWLTSSLPSLTTGESRFGVTFDWD 102
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 158 bits (399), Expect = 5e-39 Identities = 75/101 (74%), Positives = 90/101 (89%) Frame = +1 Query: 112 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISSTA 291 +LGG+I LTG NK+ARLKG++VLMRKN LD+NDFGAT+IDG EFLG+GVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 292 VDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 VD +NG RG+VG EA LEQW+TSLPSLTTGESKFG+TF+WE Sbjct: 60 VDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFEWE 100
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 108 bits (269), Expect = 6e-24 Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 3/104 (2%) Frame = +1 Query: 112 LLGGLIDTLTGANKSA---RLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLIS 282 + G L D LTG ++KGTVVLM+KNVLD NDF A+ +D EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 283 STAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 S D +NG +GK+G A LE W+T++ SLT GES F +TFD+E Sbjct: 61 SDVTDSENGSKGKLGKAAHLEDWITTITSLTAGESAFKVTFDYE 104
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 105 bits (261), Expect = 5e-23 Identities = 52/101 (51%), Positives = 71/101 (70%) Frame = +1 Query: 112 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISSTA 291 +LGGL D LTG N + ++KG VLM + +LD DF A+++D E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 292 VDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 DQ+N GRG VG+EA LEQ +T LPS++ GESK + F+WE Sbjct: 60 ADQNNEGRGIVGSEANLEQGLTDLPSVSQGESKLTVRFNWE 100
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 93.6 bits (231), Expect = 2e-19 Identities = 50/108 (46%), Positives = 70/108 (64%), Gaps = 6/108 (5%) Frame = +1 Query: 109 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGNGEFLG--KGVTC 270 M + G D LTG NK A R++GT VL++K+VL L DF A+++DG LG +GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 271 QLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 +L+S+TA D NGGRGK+G A LE+ V ++ S GES F + F+W+ Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEELVVTMKSTAAGESVFRVAFEWD 108
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 93.2 bits (230), Expect = 2e-19 Identities = 46/102 (45%), Positives = 69/102 (67%) Frame = +1 Query: 109 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISST 288 M LGG++D + G + ++KG V+LM+KNVLD + GA+++DG + LG+ V+ QLIS Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISG- 59 Query: 289 AVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 +V+ D G GK+ A LE W+T + +T GES F +TFDW+ Sbjct: 60 SVNYD-GLEGKLSNPAYLESWLTDITPITAGESTFSVTFDWD 100
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 82.0 bits (201), Expect = 5e-16 Identities = 46/100 (46%), Positives = 62/100 (62%) Frame = +1 Query: 112 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISSTA 291 L+GGLI G + S ++KGTVV+M+KN LD D ++ D E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 292 VDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDW 411 D NG +GK A LE ++ +L L GE+ FG+TFDW Sbjct: 62 SDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDW 101
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 77.0 bits (188), Expect = 2e-14 Identities = 48/107 (44%), Positives = 62/107 (57%), Gaps = 18/107 (16%) Frame = +1 Query: 148 NKSARLKGTVVLMRKNVLDLN--------------DFGATII----DGNGEFLGKGVTCQ 273 NK +++GTVVLMRKNVLD N D G II DG FLG+ V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 274 LISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 LIS+T D + G+GKVG + LE + SLP+L GES F + F+W+ Sbjct: 70 LISATKSDAN--GKGKVGKDTFLEGVLASLPTLGAGESAFNIHFEWD 114
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 73.9 bits (180), Expect = 1e-13 Identities = 41/85 (48%), Positives = 56/85 (65%) Frame = +1 Query: 160 RLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAE 339 ++KGTVVLM KN L++N G+ + D FLG+ V+ QLIS+T D G+GKVG + Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTF 63 Query: 340 LEQWVTSLPSLTTGESKFGLTFDWE 414 LE TSLP+L GES F + F+W+ Sbjct: 64 LEGINTSLPTLGAGESAFNIHFEWD 88
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 73.2 bits (178), Expect = 2e-13 Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 13/102 (12%) Frame = +1 Query: 148 NKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGNGEFLGKGVTCQLISST 288 N+ ++KGTVVLMRKNVLD+N D + +D FLG+ V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 289 AVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 D G+GK+G LE ++SLP+L G+S F + F+W+ Sbjct: 70 KPDAT--GKGKLGKATFLEGIISSLPTLGAGQSAFKIHFEWD 109
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 73.2 bits (178), Expect = 2e-13 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 13/114 (11%) Frame = +1 Query: 112 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGNGEFL 252 +LGGL+ ++ ++KGTVVLMRKNVL +N D + +D FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 253 GKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 G+ V+ QLIS+T D + G+GK+G LE +TSLP+L G+S F + F+W+ Sbjct: 55 GRPVSLQLISATKADAN--GKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD 106
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 70.9 bits (172), Expect = 1e-12 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Frame = +1 Query: 142 GANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLGKGVTCQLISSTAVDQDNGGRGK 321 G + S ++KGTVV+M KNVLD D ++ + LG+ V+ QLISS D NG +GK Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71 Query: 322 VGAEAELEQWVTSLPSLTTG-ESKFGLTFDW 411 A LE + +L LT G E+ FG+TFDW Sbjct: 72 HSNPAYLENSLFTLTPLTAGSETAFGVTFDW 102
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 67.8 bits (164), Expect = 1e-11 Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 20/108 (18%) Frame = +1 Query: 151 KSARLKGTVVLMRKNVLDLNDFGA--------------------TIIDGNGEFLGKGVTC 270 + +LKGTV+LM+KNVLD+N A +IID FLG+ V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 271 QLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 +LIS+T D G+GKV EA LE +TS+P+L +S F + F+W+ Sbjct: 68 RLISATVADAS--GKGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEWD 113
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 67.4 bits (163), Expect = 1e-11 Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 18/103 (17%) Frame = +1 Query: 160 RLKGTVVLMRKNVLDLNDFG------------------ATIIDGNGEFLGKGVTCQLISS 285 ++KGTVVLMRKNVLD N + +D FLG+ V QLIS+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISA 77 Query: 286 TAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 T + G+GKVG + LE + SLP+L GES F + F+W+ Sbjct: 78 TKPLAN--GKGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEWD 118
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 64.3 bits (155), Expect = 1e-10 Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 22/111 (19%) Frame = +1 Query: 148 NKSARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGNGEFLGKG 261 +K ++KGTVVLM KNVLD N + +ID FLG+ Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 262 VTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 ++ QLIS+T D G GKVG E LE+ + +LP+L + F + F+W+ Sbjct: 66 ISMQLISATQTD--GSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWD 114
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 62.8 bits (151), Expect = 3e-10 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 22/111 (19%) Frame = +1 Query: 148 NKSARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGNGEFLGKG 261 N+ ++KGTVVLM KNV D N+F +T I+DG + Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 262 VTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 + QLIS+T D G GKVG + LE+ + SLP+L + F + F+W+ Sbjct: 66 IAIQLISATKT--DGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEWD 114
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 61.2 bits (147), Expect = 9e-10 Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 12/100 (12%) Frame = +1 Query: 151 KSARLKGTVVLMRKNVLDLNDFGAT--IIDGNGEFLGKGV----------TCQLISSTAV 294 K ++KGT+V+M+KNVLD+N + I+D F+G V + QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATKISIQLISATKA 66 Query: 295 DQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 414 D GG+GK+G L +T LP+L GE + + F+W+ Sbjct: 67 D---GGKGKIGKSTNLRGKIT-LPTLGAGEQAYDVNFEWD 102
>SDK2_HUMAN (Q58EX2) Protein sidekick-2 precursor| Length = 2170 Score = 33.1 bits (74), Expect = 0.26 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = -3 Query: 398 RPNLDSPVVSDGRLVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPLP--SMM 225 R LDS V+ +V C +S + PRP ++W +++ LPR +PL S++ Sbjct: 404 RGPLDSTVIDGMSVVLACETSGA----PRPAITWQKGERILASGSVQLPRFTPLESGSLL 459 Query: 224 VAP 216 ++P Sbjct: 460 ISP 462
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 32.7 bits (73), Expect = 0.34 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 3/97 (3%) Frame = -3 Query: 413 SQSKVRPNLDSPVVSDGRLVTHCSSSASAPTFPRPPLSWSTAVELISWQVT---PLPRNS 243 +QS RP +PV + + + T P PL+ ++ + S V +P+N Sbjct: 1647 AQSNARPQFITPVFINSSSIIQVMKGSQPSTIPAAPLTTNSGLMPPSVAVVGPLHIPQNI 1706 Query: 242 PLPSMMVAPKSLRSSTFLRMSTTVPLSRALLFAPVRV 132 S V P +L SS + T PL + PV++ Sbjct: 1707 KFSSAPVPPNALSSSPAPNIQTGRPLVLSSRATPVQL 1743
>NODV_BRAJA (P15939) Nodulation protein V (EC 2.7.13.3)| Length = 889 Score = 32.0 bits (71), Expect = 0.58 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 217 GATIIDGNGEFLG-KGVTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTT 378 G DGNG FLG +GV+ + ++ DQ K AE VT+L +TT Sbjct: 614 GKPFFDGNGNFLGYRGVSTDITATIRADQAEQELRKAQAELAHVTRVTTLGEMTT 668
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 31.2 bits (69), Expect = 0.99 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +1 Query: 133 TLTGANKSARLKGTVVLMRKNVLDLNDFGATI 228 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>EP84_HCMVA (P17151) Early phosphoprotein p84| Length = 684 Score = 30.4 bits (67), Expect = 1.7 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = -3 Query: 404 KVRPNLDSPVVSDGRLVTHCSSSASAPTFPRPPLS 300 +++P + +PVV+ ++ SSS+SAP P PP S Sbjct: 552 EIKPYVVNPVVATAAAASNSSSSSSAPLPPPPPPS 586
>SDK2_CHICK (Q8AV57) Protein sidekick-2 precursor| Length = 2177 Score = 30.0 bits (66), Expect = 2.2 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Frame = -3 Query: 407 SKVRPNL-----DSPVVSDGRLVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNS 243 + + PN+ DS V+ ++ +C +S + PRP ++W +++ LPR + Sbjct: 403 TSIAPNITRGPQDSTVIDGMSVILNCETSGA----PRPAITWQKGERILASGSVQLPRFT 458 Query: 242 PLP--SMMVAPKSL 207 L S++V+P L Sbjct: 459 LLESGSLLVSPAHL 472
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 30.0 bits (66), Expect = 2.2 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -3 Query: 332 SAPTFPRPPLSWS-TAVELISWQVTPLPRNSPLPSMMVAPKSLRSS 198 +A T P PPLS + ++V ++S PL +NS +PS++ +S R+S Sbjct: 960 AASTMPPPPLSRAPSSVSMVS--PPPLHKNSRVPSLVATSESPRAS 1003
>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2067 Score = 29.3 bits (64), Expect = 3.7 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 3/97 (3%) Frame = -3 Query: 413 SQSKVRPNLDSPVVSDGRLVTHCSSSASAPTFPRPPLSWSTAVELISWQVT---PLPRNS 243 +QS RP +PV + + + T P PL+ ++ + S V +P+N Sbjct: 1650 AQSNARPQFITPVFINSSSIIQVMKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNI 1709 Query: 242 PLPSMMVAPKSLRSSTFLRMSTTVPLSRALLFAPVRV 132 S V P SS + T PL + PV++ Sbjct: 1710 KFSSAPVTPNVPSSSPAPNIQTGRPLVLSSRATPVQL 1746
>WSCK_DROME (P83097) Putative tyrosine-protein kinase Wsck precursor (EC| 2.7.10.1) Length = 791 Score = 29.3 bits (64), Expect = 3.7 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 121 GLIDTLTGANKSARLKGTVVLMRKNVLDLNDFG-ATIIDGNGEFLGKGVTCQLISS 285 GL+ TL G K+ +GT ++V L+DF AT G + VTC + S Sbjct: 362 GLVSTLEGVTKTMYSRGT---HDQHVTSLDDFSYATFEKGQSSVVALAVTCVIFGS 414
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -3 Query: 398 RPNLDSPVVSDGRLVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPLP--SMM 225 R LDS V+ +V C +S + PRP ++W +++ LPR + L S++ Sbjct: 410 RGPLDSTVIDGMSVVLACETSGA----PRPAITWQKGERILASGSVQLPRFTLLESGSLL 465 Query: 224 VAP 216 ++P Sbjct: 466 ISP 468
>HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase, chloroplast precursor (EC| 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) Length = 385 Score = 28.9 bits (63), Expect = 4.9 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%) Frame = -3 Query: 350 HCSSSASAPTFPRPPLSWS-----TAVELI--SWQVTPLPRNSPLPSMM----VAPKSLR 204 HC+S SAP++ P S S TA+ L SW+ P P+ + + P++ R Sbjct: 3 HCASIVSAPSYAFPFRSGSASTTPTAISLTKRSWKPPPSMAKGPVRATVSIEKETPEANR 62 Query: 203 SSTFLR 186 TFLR Sbjct: 63 PETFLR 68
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.9 bits (63), Expect = 4.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 197 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 28.9 bits (63), Expect = 4.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 197 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 197 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGR 310 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 197 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 264 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 197 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 241 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 197 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 218 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 197 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 195
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +3 Query: 72 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAH 185 G + RRGG DA G D GG R GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>AMPR_PSEAE (P24734) HTH-type transcriptional activator ampR| Length = 296 Score = 28.5 bits (62), Expect = 6.4 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -2 Query: 384 LPRRQRRQARHPLLQLRLRAH 322 LPR + QARHP + LRL H Sbjct: 110 LPRLEDFQARHPFIDLRLSTH 130
>CH60_EHRSE (O32606) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (55 kDa| major antigen) Length = 548 Score = 28.5 bits (62), Expect = 6.4 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = +1 Query: 142 GANKSARLKGTVVLMRKNVLDLNDFGATIIDGNGEFLG--KGVTCQLISSTAVDQDNGGR 315 G +S L+ +L L +D G T+ E LG K + S+T VD GG Sbjct: 282 GDRRSEMLEDIRILTGAKTLVSDDLGVTVESLTVEDLGTAKSIIISKDSTTIVD---GGG 338 Query: 316 GKVGAEAELEQWVTSLPSLTTGESK 390 K EA ++Q T + T+ K Sbjct: 339 EKTAIEARVKQIKTQIDKTTSDYDK 363
>DNAA_DESPS (Q6ARL8) Chromosomal replication initiator protein dnaA| Length = 479 Score = 28.5 bits (62), Expect = 6.4 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -3 Query: 389 LDSPVVSDGRLVTHCSSSASAPTFPRPPLSWSTAVELISW--QVTPLPRNSPLPSMMVAP 216 L+ V R + H +S SAPTFP P +S ++ S + +PR LPS+ Sbjct: 80 LEKKAVPQLRSMMH-RTSTSAPTFPVPSVSSASTASTASTASSASSVPRQLRLPSVPKNN 138 Query: 215 KSLRS 201 S+R+ Sbjct: 139 ASIRA 143
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 28.1 bits (61), Expect = 8.3 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%) Frame = +3 Query: 66 LVGAVKARRGGQEQ-DAAGRADRHPHGGEQE-------RPA---QGHGGAHAQERA 200 L+ VK RR QEQ +++G +H HG ++ +PA G GG + E A Sbjct: 632 LIRGVKVRRAAQEQGNSSGAVGKHKHGSPEKPGVSSNTKPAGAEDGTGGDDSPEAA 687
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -3 Query: 413 SQSK-VRPNLDSPVVSDGRLVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPL 237 SQ+K + P+ P +S + + A APT P PP T + + + P P+ Sbjct: 92 SQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPV 151 Query: 236 PS 231 P+ Sbjct: 152 PA 153
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 28.1 bits (61), Expect = 8.3 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Frame = -3 Query: 398 RPNLDSPVVSDGRLVTHCSSSAS---APTFPRPPLSWSTAVELISWQVTPLPRNSPLPSM 228 R +DS SDG + S+S+ AP P+ S S L + PLP PLP Sbjct: 24 RRKIDSRCSSDGESIADTSTSSPDLLAPMSPKLCDSGSAGASLGA--SLPLPLALPLPMA 81 Query: 227 MVAPKSLRSSTFLRMSTTVPLSRALLFAPV 138 + P SL S+ V +S A + A V Sbjct: 82 LPLPMSL-PLPLTAASSAVTVSLAAVVAAV 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,965,365 Number of Sequences: 219361 Number of extensions: 856690 Number of successful extensions: 3478 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3233 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3440 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
