ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26g03 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.0 bits (193), Expect = 5e-15 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Frame = +2 Query: 158 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLPLNGETLPTLFITV 334 A + C L++ S + +K DLE DV +K EA+K+ +++ LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 335 VRYVLPSEDHTIRKLLLLYLEIIXQRDAAGRVLPE 439 +R+VLP +DHTI+KLLL++ EI+ + GR+L E Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHE 97
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.0 bits (193), Expect = 5e-15 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Frame = +2 Query: 158 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLPLNGETLPTLFITV 334 A + C L++ S + +K DLE DV +K EA+K+ +++ LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 335 VRYVLPSEDHTIRKLLLLYLEIIXQRDAAGRVLPE 439 +R+VLP +DHTI+KLLL++ EI+ + GR+L E Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHE 97
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.0 bits (193), Expect = 5e-15 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Frame = +2 Query: 158 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLPLNGETLPTLFITV 334 A + C L++ S + +K DLE DV +K EA+K+ +++ LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 335 VRYVLPSEDHTIRKLLLLYLEIIXQRDAAGRVLPE 439 +R+VLP +DHTI+KLLL++ EI+ + GR+L E Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHE 97
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 78.2 bits (191), Expect = 8e-15 Identities = 36/90 (40%), Positives = 57/90 (63%) Frame = +2 Query: 170 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLPLNGETLPTLFITVVRYVL 349 PC +++ ++K DLE D K+E +KR + L LNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 350 PSEDHTIRKLLLLYLEIIXQRDAAGRVLPE 439 P ++HTI+KLLL++ EI+ + A G++L E Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQE 95
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 55.8 bits (133), Expect = 4e-08 Identities = 28/89 (31%), Positives = 50/89 (56%) Frame = +2 Query: 173 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLPLNGETLPTLFITVVRYVLP 352 C LV D A + +K LE + K+ AMK + + +NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 353 SEDHTIRKLLLLYLEIIXQRDAAGRVLPE 439 S + ++KLL Y E+ + + G + E Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQE 91
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 46.2 bits (108), Expect = 4e-05 Identities = 24/71 (33%), Positives = 43/71 (60%) Frame = +2 Query: 227 KADLEGSDVAAKVEAMKRAVMLPLNGETLPTLFITVVRYVLPSEDHTIRKLLLLYLEIIX 406 KA +GSD K++ MK ++ L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 407 QRDAAGRVLPE 439 + G++ E Sbjct: 89 KLAEDGKLRHE 99
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 32.0 bits (71), Expect = 0.68 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 131 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLPLNGET 310 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 311 LPTLFITVVRYVLPSED 361 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 39 PVNHSPPLPAPRSRSTS------AADPTTD 110 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 39 PVNHSPPLPAPRSRSTS------AADPTTD 110 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 30.8 bits (68), Expect = 1.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 21 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 152 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 30.8 bits (68), Expect = 1.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 21 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 152 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>PAG2_PIG (Q29079) Pregnancy-associated glycoprotein 2 precursor (EC| 3.4.23.-) (PAG 2) Length = 420 Score = 30.4 bits (67), Expect = 2.0 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Frame = +2 Query: 140 VHGRSGAMDKPCTLLVHFDKGSAAMANEIKA------DLEGSDVAAKVEAMKRAVMLPLN 301 +HG S A+ K +L+ HF+K N KA + D +A R ++P N Sbjct: 283 LHGPSKAVAKIHSLIKHFEKEYVVPCNARKALPDIVFTINNVDYPVPAQAYIRKYVVPCN 342 Query: 302 G-ETLPTLFITV--VRYVLPSEDHTIRK 376 + LP + T+ V Y +P++ + IRK Sbjct: 343 ARKALPDIVFTINNVDYPVPAQAY-IRK 369
>THIC_RHILO (Q98AZ3) Thiamine biosynthesis protein thiC| Length = 619 Score = 30.0 bits (66), Expect = 2.6 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 11/87 (12%) Frame = +2 Query: 23 ISPLRSCQPLPPS-----SG---SQISIHLRRRSNHRYPTRRRPPARVHGRSGAMDKPCT 178 ++P S PLP S SG QI + +R S H PT PP V+ SG P T Sbjct: 12 LTPAVSTGPLPASRKIHKSGVLHPQIRVPMREISVH--PTAGEPPVIVYDPSGPYTDP-T 68 Query: 179 LLVHFDKGSAAMANE---IKADLEGSD 250 + +KG A + +E + D+E D Sbjct: 69 VETSIEKGLARLRHEWITARGDVEAYD 95
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 21 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 152 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 155 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 198
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 3.4 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -1 Query: 226 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 53 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 21 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 152 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B)| (XIRS-L') Length = 1088 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 21 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 152 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 358 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 401
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 21 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 152 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 118 CGVSVVGSAAEVDRDLGAGRGGEWL 44 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>SOCS1_MOUSE (O35716) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) Length = 212 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +3 Query: 18 LASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 161 +A A N P PR RS ++ ++ +P A R C A PAP Sbjct: 2 VARNQVAADNAISPAAEPRRRSEPSSSSSSSSPAAPVRPRPCPAVPAP 49
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -2 Query: 261 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 124 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +3 Query: 48 HSPPLPAPRSRSTSAADPTTDTPHAVALR 134 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -1 Query: 160 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 53 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 47 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 142 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,290,197 Number of Sequences: 219361 Number of extensions: 763054 Number of successful extensions: 3749 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3419 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3732 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
