ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl26f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LCP2_DROMI (P91629) Larval cuticle protein 2 precursor (Larval c... 31 1.8
2Y829_BRUME (Q8YHH1) Hypothetical zinc metalloprotease BMEI0829 (... 29 5.1
3Y1156_BRUSU (Q8G0E1) Hypothetical zinc metalloprotease BR1156 (E... 29 5.1
4LCP1_DROMI (P91627) Larval cuticle protein 1 precursor (Larval c... 29 5.1
5BGAL_MACFA (Q60HF6) Beta-galactosidase precursor (EC 3.2.1.23) (... 29 6.7
6PLAS_CHLFU (P00300) Plastocyanin 29 6.7
7BGAL_CANFA (Q9TRY9) Beta-galactosidase precursor (EC 3.2.1.23) (... 29 6.7
8CCS_PIG (Q6PWT7) Copper chaperone for superoxide dismutase (Supe... 28 8.7
9CCS_HUMAN (O14618) Copper chaperone for superoxide dismutase (Su... 28 8.7

>LCP2_DROMI (P91629) Larval cuticle protein 2 precursor (Larval cuticle protein|
           II)
          Length = 126

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 274 NAHESTSWLEHTG--LPHKFIIQELVREPIDAILVTPP 167
           NAH S SW+   G  +  K++  E   +P+ A+L TPP
Sbjct: 63  NAHGSFSWISPEGEHVDIKYVADENGYQPVGAVLPTPP 100



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>Y829_BRUME (Q8YHH1) Hypothetical zinc metalloprotease BMEI0829 (EC 3.4.24.-)|
          Length = 379

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +3

Query: 132 QFTAGRKNPDQLGGVTKIASMGSLTSS----WMMNL 227
           +F  GR++  QLGG  KIA+M S  +S    W++ L
Sbjct: 276 RFAVGREDKCQLGGPVKIATMASKAASQGFDWLIQL 311



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>Y1156_BRUSU (Q8G0E1) Hypothetical zinc metalloprotease BR1156 (EC 3.4.24.-)|
          Length = 379

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +3

Query: 132 QFTAGRKNPDQLGGVTKIASMGSLTSS----WMMNL 227
           +F  GR++  QLGG  KIA+M S  +S    W++ L
Sbjct: 276 RFAVGREDKCQLGGPVKIATMASKAASQGFDWLIQL 311



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>LCP1_DROMI (P91627) Larval cuticle protein 1 precursor (Larval cuticle protein|
           I)
          Length = 138

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 301 QVEESNTSLNAHESTSWLEHTG--LPHKFIIQELVREPIDAILVTPP 167
           Q    +   N H S SW+   G  +  K++  E   +P+ A+L TPP
Sbjct: 64  QASSGDVHGNIHGSFSWISPEGEHVEIKYVADENGYQPVGAVLPTPP 110



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>BGAL_MACFA (Q60HF6) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase)
          Length = 682

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 295 EESNTSLNAHESTSWLEHTGLPHKFIIQELVREPIDAIL 179
           E     +N+   T WL+H G PH  I  E+V   +  IL
Sbjct: 259 EPKGPLINSEFYTGWLDHWGQPHSTIKTEVVASSLYDIL 297



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>PLAS_CHLFU (P00300) Plastocyanin|
          Length = 98

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 295 EESNTSLNAHESTSWLEHTGLPHKFIIQE 209
           E S+ ++ A E+ +W+ + G PH  +  E
Sbjct: 16  EPSSVTIKAGETVTWVNNAGFPHNIVFDE 44



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>BGAL_CANFA (Q9TRY9) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase)
          Length = 668

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 295 EESNTSLNAHESTSWLEHTGLPHKFIIQELVREPIDAIL 179
           E     +N+   T WL+H G PH  +  E+V   +  IL
Sbjct: 260 EPKGPLVNSEFYTGWLDHWGQPHSTVRTEVVASSLHDIL 298



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>CCS_PIG (Q6PWT7) Copper chaperone for superoxide dismutase (Superoxide|
           dismutase copper chaperone)
          Length = 274

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 LHESSGGDGHRLATRTCARTPAAYQNPKEWSVC 397
           L + +G  G RLA    AR+   +QNPK+   C
Sbjct: 214 LSKITGNSGERLACGIIARSAGLFQNPKQICSC 246



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>CCS_HUMAN (O14618) Copper chaperone for superoxide dismutase (Superoxide|
           dismutase copper chaperone)
          Length = 274

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 LHESSGGDGHRLATRTCARTPAAYQNPKEWSVC 397
           L + +G  G RLA    AR+   +QNPK+   C
Sbjct: 214 LSKITGNSGERLACGIIARSAGLFQNPKQICSC 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,854,027
Number of Sequences: 219361
Number of extensions: 1195473
Number of successful extensions: 3378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3373
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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