Clone Name | bastl26f07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 188 bits (95), Expect = 1e-44 Identities = 275/335 (82%) Strand = Plus / Minus Query: 126 cagtgccgcatctgccgcttccccgccgaggcggatcgccctctgcgccgcccctgcgcc 185 |||||||||||||||||| |||| || ||||||| ||||| ||||| | |||||||||| Sbjct: 27013 cagtgccgcatctgccgcgtccctgcggaggcggggcgccccctgcggcacccctgcgcc 26954 Query: 186 tgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcgccaccagc 245 ||| | || |||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct: 26953 tgccgtgggtccatccgcttcgtccacgacgactgcctcctccgatggctcgccacccgc 26894 Query: 246 cgccagtcccggtgcgaggtgtgcaaacgcgagatcaccatcagccctctccacgctcca 305 ||| |||| |||||||| ||||| ||| ||| ||| | |||||||| |||| | Sbjct: 26893 cgcacctcccactgcgaggtttgcaagcgcctcatctccacctgccctctctacgccgcg 26834 Query: 306 aatgctcccgcgaggctgcccctttccgaattcatgctcggcctggccaacaaggtcatg 365 |||||||| || ||||| ||| | ||||| |||||||||||||| ||||||||| ||||| Sbjct: 26833 aatgctcctgcaaggctccccttgtccgagttcatgctcggcctcgccaacaagctcatg 26774 Query: 366 ggctgggttatcgtgctgctctccctcgttgtcgcggtcctcgtctgggaattcatcatg 425 |||||| | || | || ||||||||| | | ||| | | ||||||||||| ||||| Sbjct: 26773 ggctggttcttcctcctcctctccctcctcgccgccatgtacatctgggaattcgtcatg 26714 Query: 426 cccatcaccactctctggacatggcgcctcgctct 460 ||| ||||||| ||||||| ||||||||||||||| Sbjct: 26713 cccttcaccaccctctggatatggcgcctcgctct 26679
>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1147B12 Length = 127902 Score = 188 bits (95), Expect = 1e-44 Identities = 275/335 (82%) Strand = Plus / Minus Query: 126 cagtgccgcatctgccgcttccccgccgaggcggatcgccctctgcgccgcccctgcgcc 185 |||||||||||||||||| |||| || ||||||| ||||| ||||| | |||||||||| Sbjct: 27013 cagtgccgcatctgccgcgtccctgcggaggcggggcgccccctgcggcacccctgcgcc 26954 Query: 186 tgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcgccaccagc 245 ||| | || |||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct: 26953 tgccgtgggtccatccgcttcgtccacgacgactgcctcctccgatggctcgccacccgc 26894 Query: 246 cgccagtcccggtgcgaggtgtgcaaacgcgagatcaccatcagccctctccacgctcca 305 ||| |||| |||||||| ||||| ||| ||| ||| | |||||||| |||| | Sbjct: 26893 cgcacctcccactgcgaggtttgcaagcgcctcatctccacctgccctctctacgccgcg 26834 Query: 306 aatgctcccgcgaggctgcccctttccgaattcatgctcggcctggccaacaaggtcatg 365 |||||||| || ||||| ||| | ||||| |||||||||||||| ||||||||| ||||| Sbjct: 26833 aatgctcctgcaaggctccccttgtccgagttcatgctcggcctcgccaacaagctcatg 26774 Query: 366 ggctgggttatcgtgctgctctccctcgttgtcgcggtcctcgtctgggaattcatcatg 425 |||||| | || | || ||||||||| | | ||| | | ||||||||||| ||||| Sbjct: 26773 ggctggttcttcctcctcctctccctcctcgccgccatgtacatctgggaattcgtcatg 26714 Query: 426 cccatcaccactctctggacatggcgcctcgctct 460 ||| ||||||| ||||||| ||||||||||||||| Sbjct: 26713 cccttcaccaccctctggatatggcgcctcgctct 26679
>dbj|AK121153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078M01, full insert sequence Length = 5410 Score = 188 bits (95), Expect = 1e-44 Identities = 275/335 (82%) Strand = Plus / Plus Query: 126 cagtgccgcatctgccgcttccccgccgaggcggatcgccctctgcgccgcccctgcgcc 185 |||||||||||||||||| |||| || ||||||| ||||| ||||| | |||||||||| Sbjct: 158 cagtgccgcatctgccgcgtccctgcggaggcggggcgccccctgcggcacccctgcgcc 217 Query: 186 tgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcgccaccagc 245 ||| | || |||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct: 218 tgccgtgggtccatccgcttcgtccacgacgactgcctcctccgatggctcgccacccgc 277 Query: 246 cgccagtcccggtgcgaggtgtgcaaacgcgagatcaccatcagccctctccacgctcca 305 ||| |||| |||||||| ||||| ||| ||| ||| | |||||||| |||| | Sbjct: 278 cgcacctcccactgcgaggtttgcaagcgcctcatctccacctgccctctctacgccgcg 337 Query: 306 aatgctcccgcgaggctgcccctttccgaattcatgctcggcctggccaacaaggtcatg 365 |||||||| || ||||| ||| | ||||| |||||||||||||| ||||||||| ||||| Sbjct: 338 aatgctcctgcaaggctccccttgtccgagttcatgctcggcctcgccaacaagctcatg 397 Query: 366 ggctgggttatcgtgctgctctccctcgttgtcgcggtcctcgtctgggaattcatcatg 425 |||||| | || | || ||||||||| | | ||| | | ||||||||||| ||||| Sbjct: 398 ggctggttcttcctcctcctctccctcctcgccgccatgtacatctgggaattcgtcatg 457 Query: 426 cccatcaccactctctggacatggcgcctcgctct 460 ||| ||||||| ||||||| ||||||||||||||| Sbjct: 458 cccttcaccaccctctggatatggcgcctcgctct 492
>dbj|AK102424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093E21, full insert sequence Length = 1289 Score = 188 bits (95), Expect = 1e-44 Identities = 275/335 (82%) Strand = Plus / Plus Query: 126 cagtgccgcatctgccgcttccccgccgaggcggatcgccctctgcgccgcccctgcgcc 185 |||||||||||||||||| |||| || ||||||| ||||| ||||| | |||||||||| Sbjct: 131 cagtgccgcatctgccgcgtccctgcggaggcggggcgccccctgcggcacccctgcgcc 190 Query: 186 tgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcgccaccagc 245 ||| | || |||| | ||||||||||||||||||||||||||||||||||||||| || Sbjct: 191 tgccgtgggtccatccgcttcgtccacgacgactgcctcctccgatggctcgccacccgc 250 Query: 246 cgccagtcccggtgcgaggtgtgcaaacgcgagatcaccatcagccctctccacgctcca 305 ||| |||| |||||||| ||||| ||| ||| ||| | |||||||| |||| | Sbjct: 251 cgcacctcccactgcgaggtttgcaagcgcctcatctccacctgccctctctacgccgcg 310 Query: 306 aatgctcccgcgaggctgcccctttccgaattcatgctcggcctggccaacaaggtcatg 365 |||||||| || ||||| ||| | ||||| |||||||||||||| ||||||||| ||||| Sbjct: 311 aatgctcctgcaaggctccccttgtccgagttcatgctcggcctcgccaacaagctcatg 370 Query: 366 ggctgggttatcgtgctgctctccctcgttgtcgcggtcctcgtctgggaattcatcatg 425 |||||| | || | || ||||||||| | | ||| | | ||||||||||| ||||| Sbjct: 371 ggctggttcttcctcctcctctccctcctcgccgccatgtacatctgggaattcgtcatg 430 Query: 426 cccatcaccactctctggacatggcgcctcgctct 460 ||| ||||||| ||||||| ||||||||||||||| Sbjct: 431 cccttcaccaccctctggatatggcgcctcgctct 465
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 180 tgcgcctgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcg 237 |||||||||||||||||||||| |||||| ||| | ||||||||||||| ||||||| Sbjct: 25590724 tgcgcctgcagcggcagcatcaagttcgtgcaccaggactgcctcctccagtggctcg 25590667
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 180 tgcgcctgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcg 237 |||||||||||||||||||||| |||||| ||| | ||||||||||||| ||||||| Sbjct: 109041 tgcgcctgcagcggcagcatcaagttcgtgcaccaggactgcctcctccagtggctcg 108984
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 180 tgcgcctgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcg 237 |||||||||||||||||||||| |||||| ||| | ||||||||||||| ||||||| Sbjct: 14169 tgcgcctgcagcggcagcatcaagttcgtgcaccaggactgcctcctccagtggctcg 14112
>dbj|AK102470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094G05, full insert sequence Length = 816 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 180 tgcgcctgcagcggcagcatcaggttcgtccacgacgactgcctcctccgatggctcg 237 |||||||||||||||||||||| |||||| ||| | ||||||||||||| ||||||| Sbjct: 273 tgcgcctgcagcggcagcatcaagttcgtgcaccaggactgcctcctccagtggctcg 330
>gb|AF057630.1|AF057630 Trichoderma harzianum Th4-113 internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 548 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 tcccggtgcgaggtgtgcaaac 273 |||||||||||||||||||||| Sbjct: 492 tcccggtgcgaggtgtgcaaac 471
>emb|AL449284.38| Human DNA sequence from clone RP11-422J8 on chromosome 1 Contains a novel gene, the 5' end of the gene for a novel protein (FLJ23231), complete sequence Length = 57729 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 ctgccgcttccccgccgaggc 157 ||||||||||||||||||||| Sbjct: 53848 ctgccgcttccccgccgaggc 53828
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 cgccgcccctgcgcctgcagcggca 195 ||||||| ||||||||||||||||| Sbjct: 324198 cgccgccgctgcgcctgcagcggca 324222
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cggatcgccctctgcgccgcc 177 ||||||||||||||||||||| Sbjct: 1336452 cggatcgccctctgcgccgcc 1336472
>ref|XM_515672.1| PREDICTED: Pan troglodytes similar to G protein-coupled receptor 45; high-affinity lysophosphatidic acid receptor (LOC459467), mRNA Length = 1558 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 1180 gcgcctgcagcggcagcaacaggt 1203
>gb|BC067455.1| Homo sapiens G protein-coupled receptor 45, mRNA (cDNA clone MGC:79287 IMAGE:6971749), complete cds Length = 1307 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 857 gcgcctgcagcggcagcaacaggt 880
>gb|AY210319.1| Human calicivirus NLV/Wyoming/US/genogroup 2 RNA polymerase gene, partial cds Length = 172 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 agggaagcttcaccgaggatggcc 59 ||||||||||||||||||| |||| Sbjct: 78 agggaagcttcaccgaggagggcc 55
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ccccgccgaggcggatcgcc 165 |||||||||||||||||||| Sbjct: 2074122 ccccgccgaggcggatcgcc 2074103
>emb|X65277.1|PANOSZG Pseudomonas aeruginosa nosZ, nosD and nosR genes, strain DSM 50071 Length = 2760 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ccctgcgcctgcagcggcag 196 |||||||||||||||||||| Sbjct: 2543 ccctgcgcctgcagcggcag 2524
>emb|AL590605.1|SPAPB1E7 S.pombe chromosome I BAC pB1E7 Length = 41788 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gcagcatcaggttcgtccac 212 |||||||||||||||||||| Sbjct: 7088 gcagcatcaggttcgtccac 7069
>ref|NM_007227.3| Homo sapiens G protein-coupled receptor 45 (GPR45), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 857 gcgcctgcagcggcagcaacaggt 880
>ref|NM_001019554.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAPB1E7.04c), partial mRNA Length = 3711 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gcagcatcaggttcgtccac 212 |||||||||||||||||||| Sbjct: 3373 gcagcatcaggttcgtccac 3392
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cgtggcggacggctcggatg 111 |||||||||||||||||||| Sbjct: 7789907 cgtggcggacggctcggatg 7789888
>gb|AC012360.7| Homo sapiens BAC clone RP11-332H14 from 2, complete sequence Length = 200918 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 128388 gcgcctgcagcggcagcaacaggt 128365
>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23 Length = 161865 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cgtggcggacggctcggatg 111 |||||||||||||||||||| Sbjct: 37110 cgtggcggacggctcggatg 37091
>gb|BC066879.1| Homo sapiens G protein-coupled receptor 45, mRNA (cDNA clone MGC:79286 IMAGE:6971748), complete cds Length = 1307 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 857 gcgcctgcagcggcagcaacaggt 880
>gb|BC066880.1| Homo sapiens G protein-coupled receptor 45, mRNA (cDNA clone MGC:79288 IMAGE:6971750), complete cds Length = 1307 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 857 gcgcctgcagcggcagcaacaggt 880
>gb|AF118266.1|AF118266 Homo sapiens orphan G protein-coupled receptor GPR45 (GPR45) gene, complete cds Length = 1601 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 792 gcgcctgcagcggcagcaacaggt 815
>gb|U92642.1|HSU92642 Human high-affinity lysophosphatidic acid receptor homolog mRNA, complete cds Length = 1777 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 gcgcctgcagcggcagcatcaggt 204 |||||||||||||||||| ||||| Sbjct: 909 gcgcctgcagcggcagcaacaggt 932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,129,501 Number of Sequences: 3902068 Number of extensions: 3129501 Number of successful extensions: 62245 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61994 Number of HSP's gapped (non-prelim): 243 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)