>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 13  PPLSPGPDQRVRRRPANPRTLREPVSESGEGPP*KNP 123
           PPL  GP ++   RP  PR  R P SE+G G P ++P
Sbjct: 280 PPLDWGPQRQTLSRPPTPR--RGPPSEAGGGKPPRSP 314

>LCP2_MOUSE (Q60787) Lymphocyte cytosolic protein 2 (SH2 domain-containing|
           leucocyte protein of 76 kDa) (SLP-76 tyrosine
           phosphoprotein) (SLP76)
          Length = 533

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 1   KIQNPPLSPGPDQRVRRRPANPRTLREP-VSESGEGP 108
           KIQ PPL P  D+  R     P T R+P V   G GP
Sbjct: 278 KIQKPPLPPAMDRHERNERLGPVTTRKPSVPRHGRGP 314

>PKHA4_RAT (P60669) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 13  PPLSPGPDQRVRRRPANPRTLREPVSESGEGPP*KNP 123
           PPL  GP ++   RP  PR  R P SE+G G P ++P
Sbjct: 280 PPLDWGPQRQTLSRPPIPR--RGPFSEAGGGRPPRSP 314

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 14   HRSHPDQTKE*EGGQQILERSASPSRNPARGPHRKIQ 124
            H   PD+  E   G + L+R++ P+R PAR P RK Q
Sbjct: 1038 HPKSPDKRPE---GDRQLQRTSPPARTPARPPERKAQ 1071

>PAIRB_MOUSE (Q9CY58) Plasminogen activator inhibitor 1 RNA-binding protein|
           (PAI1 RNA-binding protein 1) (PAI-RBP1) (SERPINE1
           mRNA-binding protein 1)
          Length = 407

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
 Frame = +1

Query: 34  DQRVRRRPANPRTLREPVSESGEG-------PP*KNPARGEG 138
           D+R  RRP   R   +P+ E GEG       P  + P RG G
Sbjct: 125 DRRAERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRG 166

>PAIRB_RAT (Q6AXS5) Plasminogen activator inhibitor 1 RNA-binding protein|
           (PAI1 RNA-binding protein 1) (PAI-RBP1) (SERPINE1
           mRNA-binding protein 1) (RDA288)
          Length = 407

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
 Frame = +1

Query: 34  DQRVRRRPANPRTLREPVSESGEG-------PP*KNPARGEG 138
           D+R  RRP   R   +P+ E GEG       P  + P RG G
Sbjct: 125 DRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRG 166

>LYSC_LYSEN (Q7M135) Lysyl endopeptidase (EC 3.4.21.50) (Lys-C)|
          Length = 269

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 140 SPSPRA-GFFYGGPSPDSETGSRSVRGFAGRLLTLWSGPGES 18
           SP  R  G  +GGPS  S TG+     + GR+ T W+G G S
Sbjct: 200 SPEKRVLGQLHGGPSSCSATGADR-SDYYGRVFTSWTGGGTS 240

>PKHA4_MOUSE (Q8VC98) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 588

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  PPLSPGPDQRVRRRPANPRTLREPVSESGEGPP*KNP 123
           PPL  GP ++   RP  PR  R P SE+G   P ++P
Sbjct: 280 PPLDWGPQRQTLSRPPIPR--RGPSSEAGGERPPRSP 314

>PAIRB_HUMAN (Q8NC51) Plasminogen activator inhibitor 1 RNA-binding protein|
           (PAI1 RNA-binding protein 1) (PAI-RBP1) (SERPINE1
           mRNA-binding protein 1)
          Length = 408

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = +1

Query: 34  DQRVRRRPANPRTLREPVSESGEG-------PP*KNPARGEG 138
           D+R  RRP   R   +P+ E GEG       P    P RG G
Sbjct: 125 DRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRG 166

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 7   QNPPLSPGPDQRVRRRPANPRTLR--EPVSESGEGPP*KNPARG 132
           QNPP  P P Q +    + P +LR  +P++    GPP ++   G
Sbjct: 122 QNPPQGPPPPQTLAGHLSPPMSLRPQQPMAPVAMGPPPQSTTSG 165

>KCD12_MOUSE (Q6WVG3) Potassium channel tetramerisation domain-containing|
           protein 12 (Pfetin) (Predominantly fetal expressed T1
           domain)
          Length = 327

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 137 PSPRAGFFYGGPSPDSETGSRSVR-GFAGRLLT 42
           P P+ G   G PSP  E  SRS   G AG LLT
Sbjct: 166 PEPQEGASAGAPSPTLELASRSPSGGAAGPLLT 198

>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding|
           protein) (Contrin) (MSY2 homolog)
          Length = 364

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 25  PGPDQRVR-RRPANPRTLREPVSESGEG--PP*KNPARG 132
           P P  R R RRP  PR  ++P +E G+G   P + PA G
Sbjct: 273 PPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADG 311

>SRF_HUMAN (P11831) Serum response factor (SRF)|
          Length = 508

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 143 TSPSPRAGFFYGGPSPDSETGSRSVRG 63
           T+P+P AG  Y G   DSE+G     G
Sbjct: 66  TTPAPTAGALYSGSEGDSESGEEEELG 92

>ADA15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 15) (Metalloproteinase-like,
           disintegrin-like, and cysteine-rich protein 15) (MDC-15)
           (Metalloprotease RGD disintegrin protein) (Metargidin)
           (CRII-7)
          Length = 816

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
 Frame = +1

Query: 13  PPLSPGPDQRVRRR-------PANPRTLREPVSESGEGPP*KNPARGEGD 141
           PP  PGP QR ++        P  P   R+P+  + +G P      G GD
Sbjct: 744 PPERPGPPQRAQQMPGTKPQGPTKPPPPRKPLPANPQGRPPLGDLPGPGD 793

>NLGN2_RAT (Q62888) Neuroligin-2 precursor|
          Length = 836

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 13  PPLSPGPDQRVRRRPANPRTLREPVSESGEGP 108
           PP +PGP     RRP  P TL  P S+   GP
Sbjct: 630 PPRTPGPGTSGTRRPPPPATL-PPESDIDLGP 660

>NGLN2_MOUSE (Q69ZK9) Neuroligin-2 precursor|
          Length = 836

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 13  PPLSPGPDQRVRRRPANPRTLREPVSESGEGP 108
           PP +PGP     RRP  P TL  P S+   GP
Sbjct: 630 PPRTPGPGTSGTRRPPPPATL-PPESDIDLGP 660

>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 113 YGGPSPDSETGSRSVRGFAGRLLTLWSGPGESG 15
           +G P P  E GSR  +G  G       GPGE G
Sbjct: 13  FGPPGPKGEPGSRGYQGHFG-------GPGEQG 38

>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor|
          Length = 1603

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 116  FYGGPSPDSETGSRSVRGFAGR--LLTLWSGPGESG 15
            FYG P P  + G+   +G AG      +  GPG+SG
Sbjct: 1359 FYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSG 1394

>COBS_SYNY3 (Q55714) Cobalamin synthase (EC 2.-.-.-)|
          Length = 260

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 126 RWIFLWGPLAGFRDGLAER--SRICWPPSHSLVWSG*ERWV 10
           RW FLWG   G   G A    +R+ WPPS  + +    RW+
Sbjct: 6   RWYFLWG---GDSVGAAILFYTRLPWPPSWPVNFDRIARWI 43

>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with|
           cancer putative autoantigen 1) (DACA-1)
          Length = 559

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 10  NPPLSPGPDQRVRRRPANPRTLREPVSESGEGPP 111
           +P  +P P Q  +  PA P  L +P  +S + PP
Sbjct: 291 SPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPP 324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.143    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,911,224
Number of Sequences: 219361
Number of extensions: 455242
Number of successful extensions: 1806
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)