>ref|XM_414970.1| PREDICTED: Gallus gallus similar to smoothened (LOC416674), mRNA
          Length = 2286

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   gagtgagaaggcggccagcaa 61
            |||||||||||||||||||||
Sbjct: 1122 gagtgagaaggcggccagcaa 1142

>gb|AF019977.1|AF019977 Gallus gallus smoothened mRNA, partial cds
          Length = 3183

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   gagtgagaaggcggccagcaa 61
            |||||||||||||||||||||
Sbjct: 1220 gagtgagaaggcggccagcaa 1240

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    aaatccagcgcgtggggaggggga 140
              |||||||||| |||||||||||||
Sbjct: 856792 aaatccagcgggtggggaggggga 856815

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    aaatccagcgcgtggggaggggga 140
              |||||||||| |||||||||||||
Sbjct: 961685 aaatccagcgggtggggaggggga 961708

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    aaatccagcgcgtggggaggggga 140
              |||||||||| |||||||||||||
Sbjct: 906779 aaatccagcgggtggggaggggga 906802

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    aaatccagcgcgtggggaggggga 140
              |||||||||| |||||||||||||
Sbjct: 907978 aaatccagcgggtggggaggggga 908001

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 88      tcggaatccggcgaggggcc 107
               ||||||||||||||||||||
Sbjct: 1304720 tcggaatccggcgaggggcc 1304739

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    aaatccagcgcgtggggaggggga 140
              |||||||||| |||||||||||||
Sbjct: 851609 aaatccagcgggtggggaggggga 851632

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 117     aaatccagcgcgtggggaggggga 140
               |||||||||| |||||||||||||
Sbjct: 1040328 aaatccagcgggtggggaggggga 1040351

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 117     aaatccagcgcgtggggaggggga 140
               |||||||||| |||||||||||||
Sbjct: 1038668 aaatccagcgggtggggaggggga 1038691

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 117     aaatccagcgcgtggggaggggga 140
               |||||||||| |||||||||||||
Sbjct: 2199446 aaatccagcgagtggggaggggga 2199423

>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    aaatccagcgcgtggggaggggga 140
              |||||||||| |||||||||||||
Sbjct: 810361 aaatccagcgggtggggaggggga 810384

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    aaatccagcgcgtggggaggggga 140
              |||||||||| |||||||||||||
Sbjct: 906837 aaatccagcgggtggggaggggga 906860

>ref|NM_032458.2| Homo sapiens PHD finger protein 6 (PHF6), transcript variant 2,
          mRNA
          Length = 4772

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 6  cgctccgcgagcccgtctc 24

>ref|NM_001015877.1| Homo sapiens PHD finger protein 6 (PHF6), transcript variant 1,
          mRNA
          Length = 4442

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 6  cgctccgcgagcccgtctc 24

>ref|NM_032335.2| Homo sapiens PHD finger protein 6 (PHF6), transcript variant 3,
          mRNA
          Length = 1236

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 6  cgctccgcgagcccgtctc 24

>ref|XM_872234.1| PREDICTED: Bos taurus similar to PHD finger protein 6 isoform 1,
          transcript variant 4 (LOC518186), mRNA
          Length = 4787

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 28 cgctccgcgagcccgtctc 46

>ref|XM_864081.1| PREDICTED: Bos taurus similar to PHD finger protein 6 isoform 1,
          transcript variant 3 (LOC518186), mRNA
          Length = 4457

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 28 cgctccgcgagcccgtctc 46

>ref|XM_596372.2| PREDICTED: Bos taurus similar to PHD finger protein 6 isoform 1,
          transcript variant 1 (LOC518186), mRNA
          Length = 1232

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 28 cgctccgcgagcccgtctc 46

>ref|XM_861007.1| PREDICTED: Canis familiaris similar to PHD finger protein 6
          isoform 1, transcript variant 4 (LOC612921), mRNA
          Length = 1781

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 16 cgctccgcgagcccgtctc 34

>ref|XM_860978.1| PREDICTED: Canis familiaris similar to PHD finger protein 6
          isoform 1, transcript variant 2 (LOC612921), mRNA
          Length = 1221

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 16 cgctccgcgagcccgtctc 34

>ref|XM_847535.1| PREDICTED: Canis familiaris similar to PHD finger protein 6
          isoform 1, transcript variant 1 (LOC612921), mRNA
          Length = 4792

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 31 cgctccgcgagcccgtctc 49

>emb|AL591668.10| Human DNA sequence from clone RP13-546E3 on chromosome X Contains the
             5' end of the PHF6 gene for PHD finger protein 6 and a CpG
             island, complete sequence
          Length = 119130

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    cgctccgcgagcccgtctc 89
             |||||||||||||||||||
Sbjct: 75008 cgctccgcgagcccgtctc 75026

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 53      ggccagcaaatcctcgaac 71
               |||||||||||||||||||
Sbjct: 2175893 ggccagcaaatcctcgaac 2175911

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 16      ccgctctcacccggaccag 34
               |||||||||||||||||||
Sbjct: 1314239 ccgctctcacccggaccag 1314221

>emb|CR380839.1|PTB083D21 Pan troglodytes chromosome X BAC PTB-083D21, complete sequence
          Length = 186291

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     cgctccgcgagcccgtctc 89
              |||||||||||||||||||
Sbjct: 184644 cgctccgcgagcccgtctc 184626

>ref|XM_939505.1| PREDICTED: Homo sapiens hypothetical protein LOC285556 (LOC285556),
            mRNA
          Length = 9976

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   gcgaggggcccccatagaa 116
            |||||||||||||||||||
Sbjct: 3891 gcgaggggcccccatagaa 3909

>ref|XM_373030.4| PREDICTED: Homo sapiens hypothetical protein LOC285556 (LOC285556),
            mRNA
          Length = 9976

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   gcgaggggcccccatagaa 116
            |||||||||||||||||||
Sbjct: 3891 gcgaggggcccccatagaa 3909

>gb|AC083902.5| Homo sapiens BAC clone RP11-766F14 from 4, complete sequence
          Length = 204860

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     gcgaggggcccccatagaa 116
              |||||||||||||||||||
Sbjct: 183301 gcgaggggcccccatagaa 183283

>dbj|AK077511.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730432M09 product:ataxin-1
           ubiquitin-like interacting protein, full insert sequence
          Length = 1640

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 22  tcacccggaccagaccaaagagtgaga 48
           ||||| ||||||| |||||||||||||
Sbjct: 605 tcaccaggaccaggccaaagagtgaga 579

>gb|AY157622.1| Homo sapiens PHD-like zinc finger protein (PHF6) mRNA, complete
          cds
          Length = 4759

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 71 cgctccgcgagcccgtctc 89
          |||||||||||||||||||
Sbjct: 6  cgctccgcgagcccgtctc 24

>emb|CT009602.4| PTB-121B21, complete sequence
          Length = 236109

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    cgctccgcgagcccgtctc 89
             |||||||||||||||||||
Sbjct: 47210 cgctccgcgagcccgtctc 47192

>dbj|AP002012.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2048D18, complete
             sequence
          Length = 90034

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    gcgaggggcccccatagaa 116
             |||||||||||||||||||
Sbjct: 48393 gcgaggggcccccatagaa 48375


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,162,898
Number of Sequences: 3902068
Number of extensions: 1162898
Number of successful extensions: 66125
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65852
Number of HSP's gapped (non-prelim): 273
length of query: 143
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 122
effective length of database: 17,151,101,840
effective search space: 2092434424480
effective search space used: 2092434424480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)