No.
Definition
Score (bits)
E Value
1 ref|NM_186392.1| Oryza sativa (japonica cultivar-group), mRNA
206
5e-50
2 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
139
9e-30
3 dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D...
139
9e-30
4 dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D...
139
9e-30
5 gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp...
42
1.6
6 ref|XM_587292.2| PREDICTED: Bos taurus GABA transporter GAT-1 ho...
42
1.6
7 gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com...
42
1.6
8 emb|AL035071.17|HS1085F17 Human DNA sequence from clone RP5-1085...
42
1.6
9 emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos...
42
1.6
10 emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, ...
42
1.6
11 gb|AC153740.3| Colobus guereza clone CH272-157M1, complete sequence
40
6.5
12 gb|AC158412.4| Cercopithecus aethiops clone CH252-436N4, complet...
40
6.5
13 gb|CP000110.1| Synechococcus sp. CC9605, complete genome
40
6.5
14 gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
40
6.5
15 gb|AC160935.2| Mus musculus BAC clone RP23-456B7 from chromosome...
40
6.5
16 gb|AC147187.2| Pan troglodytes clone CH251-116A11, complete sequ...
40
6.5
17 gb|AC141647.3| Mus musculus BAC clone RP23-64E12 from chromosome...
40
6.5
18 gb|AC127224.3| Mus musculus BAC clone RP24-498F21 from chromosom...
40
6.5
19 gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...
40
6.5
20 gb|AC123665.9| Mus musculus chromosome 14, clone RP23-226A4, com...
40
6.5
21 gb|AC136453.3| Mus musculus chromosome 19 clone RP24-327L21, com...
40
6.5
22 emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, compl...
40
6.5
23 gb|AC074021.7| Homo sapiens BAC clone RP11-354H2 from 7, complet...
40
6.5
24 gb|AC158963.3| Mus musculus chromosome 1, clone RP23-321A12, com...
40
6.5
25 gb|AC124158.3| Macaca mulatta clone CH250-337A5, complete sequence
40
6.5
26 emb|BX322574.10| Zebrafish DNA sequence from clone DKEY-35I15 in...
40
6.5
27 gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
40
6.5
28 gb|AC140486.4| Mus musculus BAC clone RP24-134B9 from chromosome...
40
6.5
29 gb|AC157474.2| Mus musculus BAC clone RP24-565B5 from chromosome...
40
6.5
30 gb|AC166003.3| Nomascus leucogenys leucogenys clone CH271-85O19,...
40
6.5
31 emb|BX005394.8| Zebrafish DNA sequence from clone DKEY-3N15 in l...
40
6.5
32 gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
40
6.5
33 gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
40
6.5
34 dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:2...
40
6.5
35 gb|AF260225.1|AF260225 Homo sapiens TESTIN 2 and TESTIN 3 genes,...
40
6.5
36 dbj|AB116263.1| Pisum sativum MKRN gene for makorin RING finger ...
40
6.5
37 gb|AC151364.3| Macaca mulatta clone CH250-142M15, complete sequence
40
6.5
38 dbj|AB097823.1| Pisum sativum MKRN mRNA for makorin ring-zinc-fi...
40
6.5
39 dbj|AB097822.1| Pisum sativum MKRN mRNA for makorin ring-zinc-fi...
40
6.5
40 dbj|AB097821.1| Pisum sativum MKRN mRNA for makorin ring-zinc-fi...
40
6.5
41 dbj|AB097820.1| Pisum sativum MKRN mRNA for makorin ring-zinc-fi...
40
6.5
42 dbj|AB097819.1| Pisum sativum MKRN mRNA for makorin ring-zinc-fi...
40
6.5
43 dbj|AB097768.1| Pisum sativum MKRN mRNA for makorin ring-zinc-fi...
40
6.5
44 gb|AC131084.13| Mus musculus chromosome 1, clone RP23-450D2, com...
40
6.5
45 emb|AL929199.11| Mouse DNA sequence from clone RP23-458A10 on ch...
40
6.5
46 gb|AC164977.2| Mus musculus BAC clone RP23-446B6 from chromosome...
40
6.5
47 emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chro...
40
6.5
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 139 bits (70), Expect = 9e-30
Identities = 106/118 (89%)
Strand = Plus / Plus
Query: 306 agtttggcattgcataataaacattcgtttgctgaagacagtgctggtgcttatcctttg 365
|||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 3242526 agtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttg 3242585
Query: 366 gtgcttagaatttctgtgcgtgaaacaagcattttgactgttaaaatcagcaagaagg 423
|||||||| || ||||| || |||||||||||||||||||| || |||||||| ||||
Sbjct: 3242586 gtgcttaggatatctgttcgagaaacaagcattttgactgtgaagatcagcaaaaagg 3242643
Score = 75.8 bits (38), Expect = 1e-10
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 165 ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 222
|||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||
Sbjct: 3239572 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 3239629
Score = 48.1 bits (24), Expect = 0.027
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 249 agctacgcactcgtcccggcggacgagctctcgcgagcgctcgc 292
|||||||| ||||| ||||| |||||||||||||| | ||||||
Sbjct: 3239656 agctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgc 3239699
Score = 40.1 bits (20), Expect = 6.5
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 421 aggataatccagttgataactataagcgggca 452
|||| ||||||||||| |||||||| ||||||
Sbjct: 3242727 aggacaatccagttgagaactataaacgggca 3242758
>dbj|AP005454.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0455F03
Length = 158201
Score = 139 bits (70), Expect = 9e-30
Identities = 106/118 (89%)
Strand = Plus / Plus
Query: 306 agtttggcattgcataataaacattcgtttgctgaagacagtgctggtgcttatcctttg 365
|||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 157516 agtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttg 157575
Query: 366 gtgcttagaatttctgtgcgtgaaacaagcattttgactgttaaaatcagcaagaagg 423
|||||||| || ||||| || |||||||||||||||||||| || |||||||| ||||
Sbjct: 157576 gtgcttaggatatctgttcgagaaacaagcattttgactgtgaagatcagcaaaaagg 157633
Score = 75.8 bits (38), Expect = 1e-10
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 165 ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 222
|||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||
Sbjct: 154562 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 154619
Score = 48.1 bits (24), Expect = 0.027
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 249 agctacgcactcgtcccggcggacgagctctcgcgagcgctcgc 292
|||||||| ||||| ||||| |||||||||||||| | ||||||
Sbjct: 154646 agctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgc 154689
Score = 40.1 bits (20), Expect = 6.5
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 421 aggataatccagttgataactataagcgggca 452
|||| ||||||||||| |||||||| ||||||
Sbjct: 157717 aggacaatccagttgagaactataaacgggca 157748
>dbj|AP003847.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1714_H10
Length = 191580
Score = 139 bits (70), Expect = 9e-30
Identities = 106/118 (89%)
Strand = Plus / Plus
Query: 306 agtttggcattgcataataaacattcgtttgctgaagacagtgctggtgcttatcctttg 365
|||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 52219 agtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttg 52278
Query: 366 gtgcttagaatttctgtgcgtgaaacaagcattttgactgttaaaatcagcaagaagg 423
|||||||| || ||||| || |||||||||||||||||||| || |||||||| ||||
Sbjct: 52279 gtgcttaggatatctgttcgagaaacaagcattttgactgtgaagatcagcaaaaagg 52336
Score = 75.8 bits (38), Expect = 1e-10
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 165 ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 222
|||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||
Sbjct: 49265 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 49322
Score = 48.1 bits (24), Expect = 0.027
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 249 agctacgcactcgtcccggcggacgagctctcgcgagcgctcgc 292
|||||||| ||||| ||||| |||||||||||||| | ||||||
Sbjct: 49349 agctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgc 49392
Score = 40.1 bits (20), Expect = 6.5
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 421 aggataatccagttgataactataagcgggca 452
|||| ||||||||||| |||||||| ||||||
Sbjct: 52420 aggacaatccagttgagaactataaacgggca 52451
>emb|AL035071.17 |HS1085F17 Human DNA sequence from clone RP5-1085F17 on chromosome 20q11.1-11.23
Contains the DNMT3B gene encoding DNA Cytosine-5
Methyltransferase 3 beta, the MAPRE1 gene encoding a
microtubule-associated protein, RP/EB family, member 1,
part of a novel gene, ESTs, STSs, GSSs, and three CpG
islands, complete sequence
Length = 118899
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 150 gtctcttccaggcttctccac 170
|||||||||||||||||||||
Sbjct: 49262 gtctcttccaggcttctccac 49242
>emb|AL805912.5 | Mouse DNA sequence from clone RP23-425K3 on chromosome 4, complete
sequence
Length = 151967
Score = 40.1 bits (20), Expect = 6.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 169 acagcttcctccacccagat 188
||||||||||||||||||||
Sbjct: 56582 acagcttcctccacccagat 56563
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,270,526
Number of Sequences: 3902068
Number of extensions: 3270526
Number of successful extensions: 66936
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66680
Number of HSP's gapped (non-prelim): 256
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)