ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26e08 |
|---|---|
| Clone Library Name | barley_pub |
>MCRA_STRLA (P43485) Mitomycin radical oxidase (EC 1.5.3.-)| Length = 447 Score = 32.0 bits (71), Expect = 0.38 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = -1 Query: 122 RDSRFSRFDQAVEEWNGDRRKGRI-DRARQWTSGG 21 RD+ FS F AV E G RR+ + DR R W++GG Sbjct: 359 RDAAFSLFTGAVPEAEGLRRRDDLLDRLRPWSTGG 393
>HSLV_BACSU (P39070) ATP-dependent protease hslV precursor (EC 3.4.25.-)| Length = 181 Score = 30.0 bits (66), Expect = 1.4 Identities = 9/28 (32%), Positives = 20/28 (71%) Frame = -1 Query: 110 FSRFDQAVEEWNGDRRKGRIDRARQWTS 27 F +F+ +EE+NG+ ++ ++ A++W S Sbjct: 64 FEKFEAKLEEYNGNLKRAAVELAKEWRS 91
>HSLV_BACSK (Q5WFQ0) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 181 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = -1 Query: 179 RIWGFMVFQGAAGLEMEELRDSRFSRFDQAVEEWNGDRRKGRIDRARQWTS 27 R++ V G AG + + F +F+ +EE+NG+ ++ ++ A++W S Sbjct: 43 RLYHNNVLAGFAGSVADAF--TLFEKFEAKLEEYNGNLQRASVELAKEWRS 91
>NIFV_AZOBR (P70728) Homocitrate synthase (EC 2.3.3.14)| Length = 376 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +2 Query: 185 GIRSKAAPLRLSSPPRWRATT 247 G+ + AP R+S+PPRW A+T Sbjct: 288 GLLTDRAPTRISTPPRWGAST 308
>HSLV_LISMO (Q8Y7J9) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 179 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = -1 Query: 179 RIWGFMVFQGAAGLEMEELRDSRFSRFDQAVEEWNGDRRKGRIDRARQWTSGGI 18 R++ V G AG + + F +F+ + E+NG+ + ++ A+QW S + Sbjct: 42 RLFHDKVIAGFAGSVADAF--TLFEKFEAKLNEYNGNLERASVELAQQWRSDSV 93
>HSLV_LISMF (Q720E3) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 179 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = -1 Query: 179 RIWGFMVFQGAAGLEMEELRDSRFSRFDQAVEEWNGDRRKGRIDRARQWTSGGI 18 R++ V G AG + + F +F+ + E+NG+ + ++ A+QW S + Sbjct: 42 RLFHDKVIAGFAGSVADAF--TLFEKFEAKLNEYNGNLERASVELAQQWRSDSV 93
>HSLV_LISIN (Q92C74) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 179 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = -1 Query: 179 RIWGFMVFQGAAGLEMEELRDSRFSRFDQAVEEWNGDRRKGRIDRARQWTSGGI 18 R++ V G AG + + F +F+ + E+NG+ + ++ A+QW S + Sbjct: 42 RLFHDKVIAGFAGSVADAF--TLFEKFEAKLNEYNGNLERAAVELAQQWRSDSV 93
>DYHB_CHLRE (Q39565) Dynein beta chain, flagellar outer arm| Length = 4568 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -2 Query: 172 GDLWFFKELRDWKWKN*GI-RDFLGSIKRWRNGMETEGREESIVLGN 35 G + KEL D++ G+ D +GS KRWR ME E E+ + G+ Sbjct: 3870 GSVQALKELDDYQ----GLPEDLIGSSKRWREWMELERPEDEPLPGD 3912
>HSLV_BACHD (Q9KA26) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 180 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = -1 Query: 179 RIWGFMVFQGAAGLEMEELRDSRFSRFDQAVEEWNGDRRKGRIDRARQWTS 27 +I+ V G AG + + F +F+ +EE+NG+ ++ ++ A++W S Sbjct: 44 KIYHGKVLAGFAGSVADAF--TLFEKFEAKLEEFNGNLQRSAVEVAKEWRS 92
>HSLV_THEMA (Q9WYZ1) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 176 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -1 Query: 161 VFQGAAGLEMEELRDSRFSRFDQAVEEWNGDRRKGRIDRARQW 33 V G AG + + + F RF+ + EW G+ K ++ A+ W Sbjct: 47 VLAGFAGSVADAM--TLFDRFEAKLREWGGNLTKAAVELAKDW 87
>HSLV_BACHK (Q6HEY5) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 180 Score = 28.5 bits (62), Expect = 4.2 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -1 Query: 110 FSRFDQAVEEWNGDRRKGRIDRARQW 33 F F+ +EE+NG+ ++ ++ A+QW Sbjct: 64 FEMFEGKLEEYNGNLQRAAVEMAKQW 89
>HSLV_BACCZ (Q636J6) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 180 Score = 28.5 bits (62), Expect = 4.2 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -1 Query: 110 FSRFDQAVEEWNGDRRKGRIDRARQW 33 F F+ +EE+NG+ ++ ++ A+QW Sbjct: 64 FEMFEGKLEEYNGNLQRAAVEMAKQW 89
>HSLV_BACCR (Q819X6) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 180 Score = 28.5 bits (62), Expect = 4.2 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -1 Query: 110 FSRFDQAVEEWNGDRRKGRIDRARQW 33 F F+ +EE+NG+ ++ ++ A+QW Sbjct: 64 FEMFEGKLEEYNGNLQRAAVEMAKQW 89
>HSLV_BACC1 (P61476) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 180 Score = 28.5 bits (62), Expect = 4.2 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -1 Query: 110 FSRFDQAVEEWNGDRRKGRIDRARQW 33 F F+ +EE+NG+ ++ ++ A+QW Sbjct: 64 FEMFEGKLEEYNGNLQRAAVEMAKQW 89
>HSLV_BACAN (Q81WK5) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 180 Score = 28.5 bits (62), Expect = 4.2 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -1 Query: 110 FSRFDQAVEEWNGDRRKGRIDRARQW 33 F F+ +EE+NG+ ++ ++ A+QW Sbjct: 64 FEMFEGKLEEYNGNLQRAAVEMAKQW 89
>Y2401_ARCFU (O30270) Hypothetical protein AF2401| Length = 348 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 30 SPLPSTIDSSLPSVSIPFLHRLIEPRKSR 116 +PL S D LP++S P+ R+IE R R Sbjct: 298 APLISYEDEKLPALSFPWERRIIESRNRR 326
>YFF9_SCHPO (O14066) Hypothetical serine-rich protein C1687.09 in chromosome I| Length = 1379 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +2 Query: 26 LKSIAEHDRFFPSFGLHSIPPPLDRT*KIANPSILPFPIPQLLEK 160 +++ + D+ FP+ +H PPPL IA PS +PQ K Sbjct: 1156 VRAAMKADKIFPA--VHENPPPLKTKQSIAKPSPHTLRVPQKKHK 1198
>VGF_BPPHK (Q38041) Capsid protein (F protein) (GPF)| Length = 431 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +3 Query: 6 REGINAP*SPLPSTIDSSLPSVSIPFLHRLIEPRKSRIPQFFHFQSRSSLKNH 164 R+G++A SPLPS + P ++ ++ P+ +RIP+F H QS ++ N+ Sbjct: 87 RDGVDA--SPLPSVTTTKYPD-DAGYVGTIV-PKSNRIPKFLH-QSYLNIYNN 134
>POLB_CHPVE (Q04350) ORFB polyprotein [Contains: Papain-like protease p48 (EC| 3.4.22.-); Putative RNA-directed RNA polymerase/Helicase (EC 2.7.7.48) (EC 3.6.1.-)] Length = 3165 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 190 NPDPGSGDLWFFKELRDWKWKN*GIRDFLGSIKRWRNGMETE 65 +PDP + D + K R W+ + GIRD + + R+ + + E Sbjct: 2367 DPDPSAHDRFIAKLDRAWRNPDEGIRDIVDGVYRYTDMIPEE 2408
>ITR2_SCHPO (P87110) Myo-inositol transporter 2| Length = 557 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 176 IWGFMVFQGAAGLEMEELRDSRFSRFDQAVEEWNGDRRKGRIDRA 42 + + + AG+ +E + F QAV+E RKGRID A Sbjct: 513 VTSYFTYPELAGMSIENIHKLLEKGFWQAVKESTKRVRKGRIDEA 557
>PDR10_ARATH (Q7PC85) Probable pleiotropic drug resistance protein 10| Length = 1418 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 61 REESIVLGNGLQGAFMPSLL 2 RE +VL NGL GAF P +L Sbjct: 842 RENKLVLLNGLSGAFRPGVL 861 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,760,310 Number of Sequences: 219361 Number of extensions: 989314 Number of successful extensions: 2627 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2580 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2625 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
