>gb|AY476736.1| Homo sapiens heparan sulfate 3-O-sulfotransferase-4 (HS3ST4) gene,
            promoter region and partial cds
          Length = 4045

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 289  cgcgcgcccggcgccgccgagg 310
            ||||||||||||||||||||||
Sbjct: 2374 cgcgcgcccggcgccgccgagg 2353

>gb|AC092141.4| Homo sapiens chromosome 16 clone RP11-478K1, complete sequence
          Length = 98984

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 289   cgcgcgcccggcgccgccgagg 310
             ||||||||||||||||||||||
Sbjct: 38068 cgcgcgcccggcgccgccgagg 38047

>gb|AC084460.1|AC084460 Caenorhabditis briggsae cosmid CB033D02, complete sequence
          Length = 77513

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 179   tggatcgggattaggagcaaggcggc 204
             |||||| |||||||||||||||||||
Sbjct: 63453 tggatcaggattaggagcaaggcggc 63428

>gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence,
            complete sequence
          Length = 132292

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 291  cgcgcccggcgccgccgagga 311
            |||||||||||||||||||||
Sbjct: 5640 cgcgcccggcgccgccgagga 5660

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      cgcgcccggcgccgccgagga 311
                |||||||||||||||||||||
Sbjct: 21500746 cgcgcccggcgccgccgagga 21500766

>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 290    gcgcgcccggcgccgccgagg 310
              |||||||||||||||||||||
Sbjct: 221240 gcgcgcccggcgccgccgagg 221260

>gb|AC161592.2| Mus musculus BAC clone RP24-252H17 from chromosome 13, complete
             sequence
          Length = 186026

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 58    cccttccttcggtctccattccatt 82
             |||||||||| ||||||||||||||
Sbjct: 73578 cccttccttcagtctccattccatt 73602

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      cgcgcccggcgccgccgagga 311
                |||||||||||||||||||||
Sbjct: 21493775 cgcgcccggcgccgccgagga 21493795

>dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110A05, full
           insert sequence
          Length = 3726

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 291 cgcgcccggcgccgccgagga 311
           |||||||||||||||||||||
Sbjct: 290 cgcgcccggcgccgccgagga 270

>emb|AL132987.4|CNS01DTV Human chromosome 14 DNA sequence BAC R-188I13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169505

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 53     ttcttcccttccttcggtctc 73
              |||||||||||||||||||||
Sbjct: 104133 ttcttcccttccttcggtctc 104153

>gb|AC132618.3| Mus musculus BAC clone RP23-238K12 from 6, complete sequence
          Length = 155828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 61    ttccttcggtctccattccattcct 85
             ||||||||||||||| |||||||||
Sbjct: 43759 ttccttcggtctccactccattcct 43735

>ref|XM_480196.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1670

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 acccgcggccgccatggcga 359
           ||||||||||||||||||||
Sbjct: 68  acccgcggccgccatggcga 87

>ref|NM_006593.2| Homo sapiens T-box, brain, 1 (TBR1), mRNA
          Length = 3186

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  cgcccggcgccgccgaggac 312
            ||||||||||||||||||||
Sbjct: 2092 cgcccggcgccgccgaggac 2111

>gb|AC146701.9| Mus musculus chromosome 10, clone RP24-142C15, complete sequence
          Length = 121683

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     atcgattcttcccttccttc 67
              ||||||||||||||||||||
Sbjct: 114585 atcgattcttcccttccttc 114604

>ref|XM_545492.2| PREDICTED: Canis familiaris similar to T-brain-1 protein (T-box brain
            protein 1) (TBR-1) (TES-56) (LOC488370), mRNA
          Length = 2346

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  cgcccggcgccgccgaggac 312
            ||||||||||||||||||||
Sbjct: 2087 cgcccggcgccgccgaggac 2106

>gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome 2, complete sequence
          Length = 176452

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   aatccctcaattcttccatt 135
             ||||||||||||||||||||
Sbjct: 47006 aatccctcaattcttccatt 47025

>gb|DQ464415.1| Uncultured Methanobacteriales archaeon clone A85 16S ribosomal RNA
           gene, partial sequence
          Length = 687

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tacccgcggccgccatggcg 358
           ||||||||||||||||||||
Sbjct: 26  tacccgcggccgccatggcg 7

>gb|DQ464406.1| Uncultured Methanobrevibacter sp. clone A111 16S ribosomal RNA
           gene, partial sequence
          Length = 740

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tacccgcggccgccatggcg 358
           ||||||||||||||||||||
Sbjct: 26  tacccgcggccgccatggcg 7

>gb|AC121156.2| Homo sapiens BAC clone RP11-502D7 from 4, complete sequence
          Length = 84092

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   cctcaattcttccatttccaatcc 143
             ||||||||||||||| ||||||||
Sbjct: 71629 cctcaattcttccatctccaatcc 71652

>dbj|AB220424.1| Macaca fascicularis mRNA, clone QccE-15226: similar to Homo sapiens
           T-box, brain, 1 (TBR1), mRNA, NM_006593.2
          Length = 2532

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 cgcccggcgccgccgaggac 312
           ||||||||||||||||||||
Sbjct: 605 cgcccggcgccgccgaggac 624

>dbj|AP007172.1| Aspergillus oryzae RIB40 genomic DNA, SC206
          Length = 343979

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 277    gcggggaggggacgcgcgcccggc 300
              ||||||| ||||||||||||||||
Sbjct: 342768 gcggggacgggacgcgcgcccggc 342791

>dbj|AK145229.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length
            enriched library, clone:G930024N07 product:Est1p-like
            protein A homolog [Homo sapiens], full insert sequence
          Length = 2285

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  attcttccatttccaatccc 144
            ||||||||||||||||||||
Sbjct: 2217 attcttccatttccaatccc 2198

>gb|AC024580.6| Homo sapiens chromosome 19 clone CTD-2621I17, complete sequence
          Length = 193609

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    gggaggggacgcgcgcccgg 299
              ||||||||||||||||||||
Sbjct: 116313 gggaggggacgcgcgcccgg 116294

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 340     acccgcggccgccatggcga 359
               ||||||||||||||||||||
Sbjct: 3431814 acccgcggccgccatggcga 3431795

>gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, complete sequence
          Length = 183666

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   cgcccggcgccgccgaggac 312
             ||||||||||||||||||||
Sbjct: 51084 cgcccggcgccgccgaggac 51103

>gb|AY171916.1| Stenotrophomonas acidaminiphila strain BF-24 16S ribosomal RNA
           gene, partial sequence
          Length = 820

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 tacccgcggccgccatggcg 358
           ||||||||||||||||||||
Sbjct: 27  tacccgcggccgccatggcg 8

>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498E12
          Length = 153523

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   acccgcggccgccatggcga 359
             ||||||||||||||||||||
Sbjct: 65233 acccgcggccgccatggcga 65214

>emb|AJ341671.1|HSA341671 Homo sapiens genomic sequence surrounding NotI site, clone NL6-LP8R
          Length = 793

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 cgcccggcgccgccgaggac 312
           ||||||||||||||||||||
Sbjct: 83  cgcccggcgccgccgaggac 102

>dbj|AK067062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092D16, full
           insert sequence
          Length = 1666

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 acccgcggccgccatggcga 359
           ||||||||||||||||||||
Sbjct: 68  acccgcggccgccatggcga 87

>gb|BC104844.1| Homo sapiens T-box, brain, 1, mRNA (cDNA clone MGC:132504
            IMAGE:8143847), complete cds
          Length = 2656

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  cgcccggcgccgccgaggac 312
            ||||||||||||||||||||
Sbjct: 2035 cgcccggcgccgccgaggac 2054

>gb|AC145978.3| Gallus gallus BAC clone CH261-10K7 from chromosome unknown, complete
             sequence
          Length = 216402

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 279   ggggaggggacgcgcgcccggcgc 302
             |||||||||| |||||||||||||
Sbjct: 36494 ggggaggggaggcgcgcccggcgc 36471

>gb|AC145947.3| Gallus gallus BAC clone CH261-24O5 from chromosome unknown, complete
              sequence
          Length = 233033

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 279    ggggaggggacgcgcgcccggcgc 302
              |||||||||| |||||||||||||
Sbjct: 150208 ggggaggggaggcgcgcccggcgc 150231

>gb|AC170751.2| Mus musculus BAC clone CH25-484K21 from chromosome 10, complete
             sequence
          Length = 105368

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    atcgattcttcccttccttc 67
             ||||||||||||||||||||
Sbjct: 22982 atcgattcttcccttccttc 22963

>gb|U49250.1|HSU49250 Human putative cerebral cortex transcriptional regulator T-Brain-1
            (Tbr-1) mRNA, complete cds
          Length = 2894

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  cgcccggcgccgccgaggac 312
            ||||||||||||||||||||
Sbjct: 1814 cgcccggcgccgccgaggac 1833

>emb|AL772389.10| Mouse DNA sequence from clone RP23-106D7 on chromosome 2, complete
             sequence
          Length = 211326

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aatccctcaattcttccatt 135
             ||||||||||||||||||||
Sbjct: 80830 aatccctcaattcttccatt 80811

>gb|AY136823.1| Aspergillus niger U6 small nuclear RNA gene, complete sequence
          Length = 1239

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 341 cccgcggccgccatggcgaa 360
           ||||||||||||||||||||
Sbjct: 38  cccgcggccgccatggcgaa 19


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,166,855
Number of Sequences: 3902068
Number of extensions: 3166855
Number of successful extensions: 66005
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65877
Number of HSP's gapped (non-prelim): 128
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)