>gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosome 5, complete sequence
          Length = 175070

 Score = 44.1 bits (22), Expect = 0.062
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 28     ccccctccctcctcctactacc 49
              ||||||||||||||||||||||
Sbjct: 113986 ccccctccctcctcctactacc 113965

>gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome 5, complete sequence
          Length = 234206

 Score = 44.1 bits (22), Expect = 0.062
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 28    ccccctccctcctcctactacc 49
             ||||||||||||||||||||||
Sbjct: 50573 ccccctccctcctcctactacc 50552

>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 12     cttcttccccgtctcgccccctccctcct 40
              |||||||||| |||| |||||||||||||
Sbjct: 813676 cttcttccccttctccccccctccctcct 813704

>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 6       tcccttcttcttccccgtctc 26
               |||||||||||||||||||||
Sbjct: 2261402 tcccttcttcttccccgtctc 2261422

>gb|AC087729.2| Pan troglodytes clone RP43-143F17, complete sequence
          Length = 208928

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 12     cttcttccccgtctcgccccctccctcct 40
              |||||||||| |||| |||||||||||||
Sbjct: 115117 cttcttccccttctccccccctccctcct 115145

>ref|XM_567065.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNA08230) partial mRNA
          Length = 1263

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 6    tcccttcttcttccccgtctc 26
            |||||||||||||||||||||
Sbjct: 1080 tcccttcttcttccccgtctc 1060

>gb|AC142297.1| Pan troglodytes BAC clone RP43-98C12 from 7, complete sequence
          Length = 137928

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 12    cttcttccccgtctcgccccctccctcct 40
             |||||||||| |||| |||||||||||||
Sbjct: 10114 cttcttccccttctccccccctccctcct 10086

>gb|AY090026.1| Ophiostoma ips clone CMW6418-5 microsatellite sequence
          Length = 252

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  tcgccccctccctcctcctac 45
           |||||||||||||||||||||
Sbjct: 231 tcgccccctccctcctcctac 211

>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    ctcgctctccaccgctcgccg 89
             |||||||||||||||||||||
Sbjct: 50835 ctcgctctccaccgctcgccg 50815

>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 61      aaccccctctcgctctccacc 81
               |||||||||||||||||||||
Sbjct: 1777413 aaccccctctcgctctccacc 1777393

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 69       ctcgctctccaccgctcgccg 89
                |||||||||||||||||||||
Sbjct: 40251883 ctcgctctccaccgctcgccg 40251863

>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1793G04
          Length = 156714

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     ctcgctctccaccgctcgccg 89
              |||||||||||||||||||||
Sbjct: 117661 ctcgctctccaccgctcgccg 117641

>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1425D05, complete sequence
          Length = 66450

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    ctcgctctccaccgctcgccg 89
             |||||||||||||||||||||
Sbjct: 43233 ctcgctctccaccgctcgccg 43213

>emb|AL606984.20| Mouse DNA sequence from clone RP23-81D5 on chromosome 4, complete
             sequence
          Length = 104368

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     tcccttcttcttccccgtctc 26
             |||||||||||||||||||||
Sbjct: 38895 tcccttcttcttccccgtctc 38915

>emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chromosome 1 Contains three
              novel genes, a novel gene (MGC45873), a novel gene
              (DKFZP564C186), a novel gene, a novel gene (DKFZP434H2010),
              a novel gene (MGC13275), the gene for bHLH factor Hes4
              (Hes4), a ribosomal protein L39 (RPL39) pseudogene, a novel
              gene, the G1P2 gene for interferon alpha-inducible protein
              (clone IFI-15K), the AGRN gene for agrin, two novel genes
              and fifteen CpG islands, complete sequence
          Length = 186759

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 15     cttccccgtctcgccccctccctcctcc 42
              ||||||| || |||||||||||||||||
Sbjct: 143826 cttccccctcccgccccctccctcctcc 143799

>gb|AC113295.5| Mus musculus chromosome 5, clone RP23-424M12, complete sequence
          Length = 239105

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    cctctcgctctccaccgctc 85
             ||||||||||||||||||||
Sbjct: 64891 cctctcgctctccaccgctc 64910

>gb|AC110556.15| Mus musculus chromosome 5, clone RP23-250G21, complete sequence
          Length = 214445

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cctctcgctctccaccgctc 85
             ||||||||||||||||||||
Sbjct: 59771 cctctcgctctccaccgctc 59752

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 11       tcttcttccccgtctcgccccctccctcctcc 42
                ||||||||| | |||||| |||||||||||||
Sbjct: 26279372 tcttcttcctcctctcgctccctccctcctcc 26279341

>emb|BX827914.1|CNS0A4MB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH34ZF08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2128

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 13  ttcttccccgtctcgccccctccctcct 40
           |||||||||||||| ||| |||||||||
Sbjct: 952 ttcttccccgtctcccccgctccctcct 925

>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1770_H02
          Length = 170648

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 11   tcttcttccccgtctcgccccctccctcctcc 42
            ||||||||| | |||||| |||||||||||||
Sbjct: 8953 tcttcttcctcctctcgctccctccctcctcc 8922

>gb|AC080037.11| Homo sapiens chromosome 17, clone CTD-3010D24, complete sequence
          Length = 248996

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cctcctcctactacccccca 54
             ||||||||||||||||||||
Sbjct: 74194 cctcctcctactacccccca 74213

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     tcgccccctccctcctcct 43
              |||||||||||||||||||
Sbjct: 481213 tcgccccctccctcctcct 481195

>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence
          Length = 192433

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                 
Query: 9      cttcttcttccccgtctcgccccctccctcctcct 43
              ||||||||||||| |||| ||| || |||||||||
Sbjct: 177221 cttcttcttccccttctccccctcttcctcctcct 177187

>gb|AC125188.4| Mus musculus BAC clone RP23-303O19 from chromosome 9, complete sequence
          Length = 194053

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    cccctccctcctcctacta 47
             |||||||||||||||||||
Sbjct: 46399 cccctccctcctcctacta 46381

>gb|AC155171.7| Mus musculus BAC clone RP23-100A10 from chromosome 7, complete sequence
          Length = 193027

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                 
Query: 9      cttcttcttccccgtctcgccccctccctcctcct 43
              ||||||||||||| |||| ||| || |||||||||
Sbjct: 122044 cttcttcttccccttctccccctcttcctcctcct 122078

>emb|AL353726.22| Human DNA sequence from clone RP11-345K9 on chromosome 9 Contains a
             novel pseudogene, complete sequence
          Length = 71754

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 32    ctccctcctcctactacccccca 54
             ||||||| |||||||||||||||
Sbjct: 18856 ctccctcttcctactacccccca 18834

>emb|AL353572.13| Human DNA sequence from clone RP11-350E12 on chromosome 9 Contains the
             gene for cell cycle related kinase (CCRK,CDCH), two novel
             pseudogenes, a 40S ribosomal protein S10 pseudogene
             (RPS10P3), a pseudogene similar to part of a novel protein
             and two CpG islands, complete sequence
          Length = 207295

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 32    ctccctcctcctactacccccca 54
             ||||||| |||||||||||||||
Sbjct: 24820 ctccctcttcctactacccccca 24842

>gb|AC152452.3| Mus musculus BAC clone RP24-279M22 from chromosome 9, complete sequence
          Length = 176943

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     cccctccctcctcctacta 47
              |||||||||||||||||||
Sbjct: 158152 cccctccctcctcctacta 158134

>gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome 7, complete sequence
          Length = 196031

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                
Query: 9     cttcttcttccccgtctcgccccctccctcctcct 43
             ||||||||||||| |||| ||| || |||||||||
Sbjct: 82021 cttcttcttccccttctccccctcttcctcctcct 82055

>emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chromosome X, complete
              sequence
          Length = 169309

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 23     tctcgccccctccctcctcctac 45
              |||| ||||||||||||||||||
Sbjct: 112849 tctctccccctccctcctcctac 112871

>emb|AL662887.13| Mouse DNA sequence from clone RP23-400P17 on chromosome 11, complete
             sequence
          Length = 198011

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 14    tcttccccgtctcgccccctccctcct 40
             |||||||| |||| |||||||||||||
Sbjct: 97836 tcttccccctctctccccctccctcct 97862

>emb|X55346.1|HSPROM Human DNA promoter region for ETS1 gene
          Length = 1966

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 18   ccccgtctcgccccctccc 36
            |||||||||||||||||||
Sbjct: 1259 ccccgtctcgccccctccc 1241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 945,067
Number of Sequences: 3902068
Number of extensions: 945067
Number of successful extensions: 86870
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86593
Number of HSP's gapped (non-prelim): 277
length of query: 89
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 68
effective length of database: 17,151,101,840
effective search space: 1166274925120
effective search space used: 1166274925120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)