>STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67)|
           (Galactinol--raffinose galactosyltransferase)
          Length = 853

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +2

Query: 224 GAFLGVRSAPAGSRSVFPVGKLRDLRFMCTFRFKMWWMTQRMGSSGRDIPVETQFLIVEA 403
           G F G        R +  +G      F+  FRFK WW TQ +G SG D+ +ETQ++++E 
Sbjct: 72  GGFFGFSHETPSDRLMNSIGSFNGKDFLSIFRFKTWWSTQWIGKSGSDLQMETQWILIEV 131

Query: 404 AD 409
            +
Sbjct: 132 PE 133

>I3MS_BRANA (Q00650) Microspore-specific protein I3|
          Length = 156

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 25/92 (27%), Positives = 36/92 (39%)
 Frame = -2

Query: 381 VSTGMSRPDEPILCVIHHILNLNVHMNRRSLSFPTGKTLRLPAGADRTPRNAPLSMPPPA 202
           ++TG++       C  HH + L     + + S P     ++  GA   PR AP + P  A
Sbjct: 70  LTTGLAAAGGRCDCCHHHPVALQASNGQGAASSPVKVLKKIIPGAAAAPRAAPAAAPAAA 129

Query: 201 AGXXXXXXXXXXXXVAPSAARLPSSWTAIPAP 106
                          AP+AA  P    A PAP
Sbjct: 130 P------------AAAPAAAPAPKP-AAAPAP 148

>PRD15_HUMAN (P57071) PR domain zinc finger protein 15 (PR domain-containing|
           protein 15) (Zinc finger protein 298)
          Length = 1507

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 193 DEHIVAHLRQDRG--PQRRQAAVLLDRDPGSHRHLPPPAPQSSNQST*EDLRR 41
           +EH++ HL Q +   P  +  A   +++  + R  PP  P+S N +T E  ++
Sbjct: 579 NEHLLGHLEQAKSLPPGSQSEAAAPEKEQDTPRGEPPAVPESENVATKEQKKK 631

>SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-like protein 3|
            (SPA-1-like protein 3)
          Length = 1781

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = -2

Query: 303  NRRSLSFPTGKTLRLPAGADRTPRNAPLSMPPPAAGXXXXXXXXXXXXVAPSAARLPSSW 124
            ++R +SFP       PAGADR P   P   P   +G              PS    P  +
Sbjct: 1130 SKRPVSFPETPYTVSPAGADRVP---PYRQP---SGSFSTPGSATYVRYKPS----PERY 1179

Query: 123  TAIPAPTVIFLPPHRS 76
            TA P P ++ L PH S
Sbjct: 1180 TAAPHP-LLSLDPHFS 1194

>Y1411_SYNY3 (P72725) UPF0272 protein slr1411|
          Length = 422

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 318 LNVH---MNRRSLSFPTGKTLRLPAGADRTPRNAPLSMPPP 205
           LN+H   +   S  FP    LRL  G + TP N PLS   P
Sbjct: 222 LNLHKVGLGAGSKDFPLANILRLWIGTEITPHNHPLSSEAP 262

>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)|
          Length = 1755

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 211 APGGRRDEHIVAHLRQDRGPQRRQAAVLLDRDPGSHRHLPPPAPQSS 71
           +PG   D H   H++  + P+   A  +    PG    L PP+P+ S
Sbjct: 294 SPGNPVDSHAYPHIQNSKQPRVPSAKAVTSGLPGDTALLLPPSPRPS 340

>NEST_RAT (P21263) Nestin|
          Length = 1805

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 24/67 (35%), Positives = 29/67 (43%)
 Frame = -1

Query: 214 AAPGGRRDEHIVAHLRQDRGPQRRQAAVLLDRDPGSHRHLPPPAPQSSNQST*EDLRRWD 35
           AA   R  E + A   ++R     QAA    R P     +P PAP+       EDL R  
Sbjct: 130 AAELERELEALRAAHEEERAHLNAQAACAPRRPPAPPHRIPGPAPEV------EDLARRL 183

Query: 34  LWVWRGA 14
             VWRGA
Sbjct: 184 GEVWRGA 190

>SPIT1_HUMAN (O43278) Kunitz-type protease inhibitor 1 precursor (Hepatocyte|
           growth factor activator inhibitor type 1) (HAI-1)
          Length = 529

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 121 RDPGSHRHLPPPAPQSSNQST*ED 50
           +D   H H PPP P SS  ST ED
Sbjct: 493 KDFHGHHHHPPPTPASSTVSTTED 516

>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 961

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 160 RGPQRRQAAVLLDRDPGSHRHLPPPAPQ 77
           RGP    +++ + ++P S R +PPP PQ
Sbjct: 787 RGPPAPSSSLPIRQEPSSFRAVPPPQPQ 814

>TAF1C_HUMAN (Q15572) TATA box-binding protein-associated factor RNA polymerase|
           I subunit C (TATA box-binding protein-associated factor
           1C) (TBP-associated factor 1C) (TBP-associated factor
           RNA polymerase I 110 kDa) (TAFI110)
          Length = 869

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 133 VLLDRDPGSHRHL-PPPAPQSSNQST*EDLRRWDLWVWRGARLW 5
           +LL RD GS     PPPAP+S  +    + R  + W  RGA  W
Sbjct: 691 LLLQRDLGSLPAAEPPPAPESGLEDKLSE-RLGEAWAGRGAAWW 733

>PAR3L_HUMAN (Q8TEW8) Amyotrophic lateral sclerosis 2 chromosome region|
           candidate gene 19 protein (Partitioning-defective 3-like
           protein) (PAR3-L protein) (PAR3-beta)
          Length = 1205

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 220 EHAAPGGRRDEHIVAHLRQDRGPQRRQAAVLLDRDPGSHRHLPP-PAPQSS 71
           ++A    RR+++ + H      PQ +Q  +LL  D  +   +PP P P S+
Sbjct: 614 QNAVTTSRRNDNSILHPLGTCSPQDKQKGLLLPNDGWAESEVPPSPTPHSA 664

>TLX2_HUMAN (O43763) T-cell leukemia homeobox protein 2 (Homeobox protein|
           Hox-11L1) (Neural crest homeobox protein)
          Length = 284

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 258 PAGADRTPRNAPLSMPPPAAG 196
           P G  R P + PL +PPPA G
Sbjct: 77  PGGVIRVPAHRPLPVPPPAGG 97

>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich|
           protein) (Nasopharyngeal carcinoma-associated
           proline-rich protein 4)
          Length = 134

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 18/53 (33%)
 Frame = -1

Query: 169 RQDRGPQRRQAAVLLDRDPGS------------------HRHLPPPAPQSSNQ 65
           R D+GPQR     LL R PG                   HRH PPP  Q+  +
Sbjct: 41  RPDQGPQRPPPEGLLPRPPGDSGNQDDGPQQRPPKPGGHHRHPPPPPFQNQQR 93

>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle|
           protein) (Paired helical filament-tau) (PHF-tau)
          Length = 751

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
 Frame = -2

Query: 279 TGKTLRLPAGADRTPRNAPLSMPPPAAGXXXXXXXXXXXXVAPSAAR---LPSSWTAIPA 109
           T    R+PA    +P+  P S  PP +G               S +R   LP+  T  P 
Sbjct: 475 TSNATRIPAKTTPSPKTPPGSGEPPKSGERSGYSSPGSPGTPGSRSRTPSLPTPPTREPK 534

Query: 108 PTVIFLPPHRSPPIKARR 55
              +   P +SP     R
Sbjct: 535 KVAVVRTPPKSPSASKSR 552

>B4GT2_HUMAN (O60909) Beta-1,4-galactosyltransferase 2 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 2) [Includes: L
          Length = 372

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = -2

Query: 348 ILCVIHHILNLNVHMN--RRSLSFPTGKTLRLPAGADRTPRNAPLSMPPPAAGXXXXXXX 175
           +LC++H ++ + ++ +   + L+F +  + R PA A             PAA        
Sbjct: 18  LLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALH-----------PAASSSSSSSN 66

Query: 174 XXXXXVAPSAARLPSSWTAIPAPTVIFLPP-HRSPP 70
                   S++ LP   +A+P PT   LPP   SPP
Sbjct: 67  CSRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPP 102

>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)|
          Length = 1759

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 208 PGGRRDEHIVAHLRQDRGPQRRQAAVLLDRDPGSHRHLPPPAPQSS 71
           PG   D H   H++  + P+   A  +    PG    L PP+P+ S
Sbjct: 295 PGNPVDSHSYPHIQNSKQPRVTSAKAVNSGLPGDTALLLPPSPRPS 340

>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle|
           protein) (Paired helical filament-tau) (PHF-tau)
          Length = 732

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
 Frame = -2

Query: 279 TGKTLRLPAGADRTPRNAPLSMPPPAAGXXXXXXXXXXXXVAPSAAR---LPSSWTAIPA 109
           T    R+PA    +P+  P S  PP +G               S +R   LP+  T  P 
Sbjct: 456 TSNATRIPAKTTPSPKTPPGSGEPPKSGERSGYSSPGSPGTPGSRSRTPSLPTPPTREPK 515

Query: 108 PTVIFLPPHRSPPIKARR 55
              +   P +SP     R
Sbjct: 516 KVAVVRTPPKSPSASKSR 533

>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2067

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = -2

Query: 261 LPAGADRTPRNAPLSMPPPAAGXXXXXXXXXXXXVAPSAARLPSSWTAIPAPTVIFLPPH 82
           +P G ++ P  A    PPPA G             AP  + + +   A P+   +  P H
Sbjct: 318 VPPGWNQLPSGA--LQPPPAQGSLGTMTTNQGWKKAPLPSPMQAQLQARPSLATVQTPSH 375

Query: 81  RSPP 70
             PP
Sbjct: 376 PPPP 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,808,208
Number of Sequences: 219361
Number of extensions: 926943
Number of successful extensions: 3803
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3791
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)