Clone Name | bastl26e02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483143.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2616 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 94 gaagatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctggg 153 |||||||||||||||||||||| | ||||| ||||| |||| |||||| ||||||||| Sbjct: 98 gaagatgacggtgggagccggggtggcggtgcagga---cggcggcctggtggcgctggg 154 Query: 154 ggccacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcgg 213 |||||||| ||||||||||||||||||||||||||| | |||||||||||||| | ||| Sbjct: 155 cgccacggtgctgacggaggtgcgcgacaatgtgctcctgacgccggccgccggcgccgg 214 Query: 214 catgctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtctt 273 |||| | |||| ||||| |||| ||||| || ||| ||||||||||||| |||||||| Sbjct: 215 catgacgagcggcacgttcgtcggagtccgctccgccaccgccggcagccgcagcgtctt 274 Query: 274 ccccgtcgggaagctcagggacctgcgattcatgtgcacgttcaggttcaagatgtggtg 333 |||||||||||||||||||| |||| ||||| ||||||||| |||| ||||||||||| Sbjct: 275 ccccgtcgggaagctcaggggattgcggttcatctgcacgttccggtttaagatgtggtg 334 Query: 334 gatgacacagaggatgggctcatcgggccgcgacatccccgttgagacgcagttcttgat 393 |||||| ||||||||||| | || ||||||||||||||| | |||||||||||| | | Sbjct: 335 gatgacgcagaggatggggacgtcaggccgcgacatccccttcgagacgcagttcctcct 394 Query: 394 cgtcgaggccgccga 408 ||||||||||||||| Sbjct: 395 cgtcgaggccgccga 409
>ref|XM_483144.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2500 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 94 gaagatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctggg 153 |||||||||||||||||||||| | ||||| ||||| |||| |||||| ||||||||| Sbjct: 105 gaagatgacggtgggagccggggtggcggtgcagga---cggcggcctggtggcgctggg 161 Query: 154 ggccacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcgg 213 |||||||| ||||||||||||||||||||||||||| | |||||||||||||| | ||| Sbjct: 162 cgccacggtgctgacggaggtgcgcgacaatgtgctcctgacgccggccgccggcgccgg 221 Query: 214 catgctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtctt 273 |||| | |||| ||||| |||| ||||| || ||| ||||||||||||| |||||||| Sbjct: 222 catgacgagcggcacgttcgtcggagtccgctccgccaccgccggcagccgcagcgtctt 281 Query: 274 ccccgtcgggaagctcagggacctgcgattcatgtgcacgttcaggttcaagatgtggtg 333 |||||||||||||||||||| |||| ||||| ||||||||| |||| ||||||||||| Sbjct: 282 ccccgtcgggaagctcaggggattgcggttcatctgcacgttccggtttaagatgtggtg 341 Query: 334 gatgacacagaggatgggctcatcgggccgcgacatccccgttgagacgcagttcttgat 393 |||||| ||||||||||| | || ||||||||||||||| | |||||||||||| | | Sbjct: 342 gatgacgcagaggatggggacgtcaggccgcgacatccccttcgagacgcagttcctcct 401 Query: 394 cgtcgaggccgccga 408 ||||||||||||||| Sbjct: 402 cgtcgaggccgccga 416
>dbj|AK067229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096C15, full insert sequence Length = 2616 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 94 gaagatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctggg 153 |||||||||||||||||||||| | ||||| ||||| |||| |||||| ||||||||| Sbjct: 98 gaagatgacggtgggagccggggtggcggtgcagga---cggcggcctggtggcgctggg 154 Query: 154 ggccacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcgg 213 |||||||| ||||||||||||||||||||||||||| | |||||||||||||| | ||| Sbjct: 155 cgccacggtgctgacggaggtgcgcgacaatgtgctcctgacgccggccgccggcgccgg 214 Query: 214 catgctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtctt 273 |||| | |||| ||||| |||| ||||| || ||| ||||||||||||| |||||||| Sbjct: 215 catgacgagcggcacgttcgtcggagtccgctccgccaccgccggcagccgcagcgtctt 274 Query: 274 ccccgtcgggaagctcagggacctgcgattcatgtgcacgttcaggttcaagatgtggtg 333 |||||||||||||||||||| |||| ||||| ||||||||| |||| ||||||||||| Sbjct: 275 ccccgtcgggaagctcaggggattgcggttcatctgcacgttccggtttaagatgtggtg 334 Query: 334 gatgacacagaggatgggctcatcgggccgcgacatccccgttgagacgcagttcttgat 393 |||||| ||||||||||| | || ||||||||||||||| | |||||||||||| | | Sbjct: 335 gatgacgcagaggatggggacgtcaggccgcgacatccccttcgagacgcagttcctcct 394 Query: 394 cgtcgaggccgccga 408 ||||||||||||||| Sbjct: 395 cgtcgaggccgccga 409
>dbj|AK067381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102C10, full insert sequence Length = 2499 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 94 gaagatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctggg 153 |||||||||||||||||||||| | ||||| ||||| |||| |||||| ||||||||| Sbjct: 104 gaagatgacggtgggagccggggtggcggtgcagga---cggcggcctggtggcgctggg 160 Query: 154 ggccacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcgg 213 |||||||| ||||||||||||||||||||||||||| | |||||||||||||| | ||| Sbjct: 161 cgccacggtgctgacggaggtgcgcgacaatgtgctcctgacgccggccgccggcgccgg 220 Query: 214 catgctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtctt 273 |||| | |||| ||||| |||| ||||| || ||| ||||||||||||| |||||||| Sbjct: 221 catgacgagcggcacgttcgtcggagtccgctccgccaccgccggcagccgcagcgtctt 280 Query: 274 ccccgtcgggaagctcagggacctgcgattcatgtgcacgttcaggttcaagatgtggtg 333 |||||||||||||||||||| |||| ||||| ||||||||| |||| ||||||||||| Sbjct: 281 ccccgtcgggaagctcaggggattgcggttcatctgcacgttccggtttaagatgtggtg 340 Query: 334 gatgacacagaggatgggctcatcgggccgcgacatccccgttgagacgcagttcttgat 393 |||||| ||||||||||| | || ||||||||||||||| | |||||||||||| | | Sbjct: 341 gatgacgcagaggatggggacgtcaggccgcgacatccccttcgagacgcagttcctcct 400 Query: 394 cgtcgaggccgccga 408 ||||||||||||||| Sbjct: 401 cgtcgaggccgccga 415
>gb|AF251068.2| Oryza sativa (japonica cultivar-group) alkaline alpha-galactosidase mRNA, complete cds Length = 2694 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 94 gaagatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctggg 153 |||||||||||||||||||||| | ||||| ||||| |||| |||||| ||||||||| Sbjct: 179 gaagatgacggtgggagccggggtggcggtgcagga---cggcggcctggtggcgctggg 235 Query: 154 ggccacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcgg 213 |||||||| ||||||||||||||||||||||||||| | |||||||||||||| | ||| Sbjct: 236 cgccacggtgctgacggaggtgcgcgacaatgtgctcctgacgccggccgccggcgccgg 295 Query: 214 catgctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtctt 273 |||| | |||| ||||| |||| ||||| || ||| ||||||||||||| |||||||| Sbjct: 296 catgacgagcggcacgttcgtcggagtccgctccgccaccgccggcagccgcagcgtctt 355 Query: 274 ccccgtcgggaagctcagggacctgcgattcatgtgcacgttcaggttcaagatgtggtg 333 |||||||||||||||||||| |||| ||||| ||||||||| |||| ||||||||||| Sbjct: 356 ccccgtcgggaagctcaggggattgcggttcatctgcacgttccggtttaagatgtggtg 415 Query: 334 gatgacacagaggatgggctcatcgggccgcgacatccccgttgagacgcagttcttgat 393 |||||| ||||||||||| | || ||||||||||||||| | |||||||||||| | | Sbjct: 416 gatgacgcagaggatggggacgtcaggccgcgacatccccttcgagacgcagttcctcct 475 Query: 394 cgtcgaggccgccga 408 ||||||||||||||| Sbjct: 476 cgtcgaggccgccga 490
>gb|AF497512.1| Zea mays alkaline alpha galactosidase 3 mRNA, complete cds Length = 2483 Score = 244 bits (123), Expect = 2e-61 Identities = 239/277 (86%), Gaps = 3/277 (1%) Strand = Plus / Plus Query: 97 gatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctgggggc 156 |||||||||||| ||||| ||||| |||||||| ||||||||| ||||||||| || Sbjct: 103 gatgacggtgggcgccggcatcgccgtccagga---cggcagcctcctggcgctgggcgc 159 Query: 157 cacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcggcat 216 || ||||||| ||||||||||| ||| |||||||| |||||||||||||| || ||| | Sbjct: 160 caaggtcctgcgggaggtgcgcggcaacgtgctcgtgacgccggccgccggcgggggcct 219 Query: 217 gctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtcttccc 276 ||||||||||||||||||||||||||| || ||||||| |||||| ||| ||||||| Sbjct: 220 aaccaacggcgcgttcctcggcgtccggtccgcgcccgccgccagccgcagcatcttccc 279 Query: 277 cgtcgggaagctcagggacctgcgattcatgtgcacgttcaggttcaagatgtggtggat 336 ||||||||||||| |||||| ||| ||| ||||||||||| ||||||||||||||||||| Sbjct: 280 cgtcgggaagctccgggaccagcggttcgtgtgcacgttccggttcaagatgtggtggat 339 Query: 337 gacacagaggatgggctcatcgggccgcgacatcccc 373 ||| || ||||||||||| | |||||||||||||| Sbjct: 340 gacgcaaaggatgggctccgcaagccgcgacatcccc 376
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 192 bits (97), Expect = 7e-46 Identities = 174/199 (87%), Gaps = 3/199 (1%) Strand = Plus / Plus Query: 94 gaagatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctggg 153 |||||||||||||||||||||| | ||||| ||||| |||| |||||| ||||||||| Sbjct: 24468082 gaagatgacggtgggagccggggtggcggtgcagga---cggcggcctggtggcgctggg 24468138 Query: 154 ggccacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcgg 213 |||||||| ||||||||||||||||||||||||||| | |||||||||||||| | ||| Sbjct: 24468139 cgccacggtgctgacggaggtgcgcgacaatgtgctcctgacgccggccgccggcgccgg 24468198 Query: 214 catgctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtctt 273 |||| | |||| ||||| |||| ||||| || ||| ||||||||||||| |||||||| Sbjct: 24468199 catgacgagcggcacgttcgtcggagtccgctccgccaccgccggcagccgcagcgtctt 24468258 Query: 274 ccccgtcgggaagctcagg 292 ||||||||||||||||||| Sbjct: 24468259 ccccgtcgggaagctcagg 24468277 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 297 tgcgattcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcat 356 |||| ||||| ||||||||| |||| ||||||||||||||||| ||||||||||| | | Sbjct: 24468731 tgcggttcatctgcacgttccggtttaagatgtggtggatgacgcagaggatggggacgt 24468790 Query: 357 cgggccgcgacatccccgttgagacgcagttcttgatcgtcgaggccgccga 408 | ||||||||||||||| | |||||||||||| | |||||||||||||||| Sbjct: 24468791 caggccgcgacatccccttcgagacgcagttcctcctcgtcgaggccgccga 24468842
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1142B04 Length = 161964 Score = 192 bits (97), Expect = 7e-46 Identities = 174/199 (87%), Gaps = 3/199 (1%) Strand = Plus / Plus Query: 94 gaagatgacggtgggagccgggatcgcggtccaggaggacggcagcctggcggcgctggg 153 |||||||||||||||||||||| | ||||| ||||| |||| |||||| ||||||||| Sbjct: 83798 gaagatgacggtgggagccggggtggcggtgcagga---cggcggcctggtggcgctggg 83854 Query: 154 ggccacggtcctgacggaggtgcgcgacaatgtgctcgtcacgccggccgccgggggcgg 213 |||||||| ||||||||||||||||||||||||||| | |||||||||||||| | ||| Sbjct: 83855 cgccacggtgctgacggaggtgcgcgacaatgtgctcctgacgccggccgccggcgccgg 83914 Query: 214 catgctcaacggcgcgttcctcggcgtccggtcggcccccgccggcagccggagcgtctt 273 |||| | |||| ||||| |||| ||||| || ||| ||||||||||||| |||||||| Sbjct: 83915 catgacgagcggcacgttcgtcggagtccgctccgccaccgccggcagccgcagcgtctt 83974 Query: 274 ccccgtcgggaagctcagg 292 ||||||||||||||||||| Sbjct: 83975 ccccgtcgggaagctcagg 83993 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 297 tgcgattcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcat 356 |||| ||||| ||||||||| |||| ||||||||||||||||| ||||||||||| | | Sbjct: 84447 tgcggttcatctgcacgttccggtttaagatgtggtggatgacgcagaggatggggacgt 84506 Query: 357 cgggccgcgacatccccgttgagacgcagttcttgatcgtcgaggccgccga 408 | ||||||||||||||| | |||||||||||| | |||||||||||||||| Sbjct: 84507 caggccgcgacatccccttcgagacgcagttcctcctcgtcgaggccgccga 84558
>ref|XM_477103.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2292 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 302 ttcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcatcgggc 361 ||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || ||| Sbjct: 202 ttcatgtgcctgttcaggttcaagctgtggtggatgacgcagaggatgggctcctccggc 261 Query: 362 cgcgacatccccgttgagacgcagttcttgatcgtcgagg 401 |||||| |||| | ||||| |||||| || || |||||| Sbjct: 262 cgcgacgtcccgctcgagacccagttcatgctcatcgagg 301
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 302 ttcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcatcgggc 361 ||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || ||| Sbjct: 5925651 ttcatgtgcctgttcaggttcaagctgtggtggatgacgcagaggatgggctcctccggc 5925592 Query: 362 cgcgacatccccgttgagacgcagttcttgatcgtcgagg 401 |||||| |||| | ||||| |||||| || || |||||| Sbjct: 5925591 cgcgacgtcccgctcgagacccagttcatgctcatcgagg 5925552 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 ggggggaggaagatgacggtgggag 110 |||||||||| |||||||||||||| Sbjct: 13631992 ggggggaggatgatgacggtgggag 13632016
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 302 ttcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcatcgggc 361 ||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || ||| Sbjct: 68099 ttcatgtgcctgttcaggttcaagctgtggtggatgacgcagaggatgggctcctccggc 68040 Query: 362 cgcgacatccccgttgagacgcagttcttgatcgtcgagg 401 |||||| |||| | ||||| |||||| || || |||||| Sbjct: 68039 cgcgacgtcccgctcgagacccagttcatgctcatcgagg 68000
>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full insert sequence Length = 2827 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 302 ttcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcatcgggc 361 ||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || ||| Sbjct: 432 ttcatgtgcctgttcaggttcaagctgtggtggatgacgcagaggatgggctcctccggc 491 Query: 362 cgcgacatccccgttgagacgcagttcttgatcgtcgagg 401 |||||| |||| | ||||| |||||| || || |||||| Sbjct: 492 cgcgacgtcccgctcgagacccagttcatgctcatcgagg 531
>gb|BT009329.1| Triticum aestivum clone wlm24.pk0021.h1:fis, full insert mRNA sequence Length = 2668 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 299 cgattcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcatcg 358 |||||||||||| |||| |||||||| ||||||||||||| ||| |||||||| | || Sbjct: 372 cgattcatgtgcctgttccggttcaagctgtggtggatgacgcagcggatgggcacctcc 431 Query: 359 ggccgcgacatccc 372 ||||||||| |||| Sbjct: 432 ggccgcgacgtccc 445
>gb|M77475.1|BLYSIP1A Hordeum vulgare seed imbitition protein (Sip1) gene, complete cds Length = 4788 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 299 cgattcatgtgcacgttcaggttcaagatgtggtggatgacacagaggatgggctcatcg 358 ||||||||||| |||| |||||||| ||||||||||||| ||| |||||||| | || Sbjct: 1603 cgattcatgtgtctgttccggttcaagctgtggtggatgacgcagcggatgggcacctcc 1662 Query: 359 ggccgcgacatccc 372 ||||||||| |||| Sbjct: 1663 ggccgcgacgtccc 1676
>gb|AF497510.2| Zea mays alkaline alpha galactosidase 1 mRNA, complete cds Length = 2790 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 313 gttcaggttcaagatgtggtggatgacacagaggatgggctcatcgggccgcgacatccc 372 |||| |||||||| ||||||||||||| ||| |||||||| || ||||||||| |||| Sbjct: 510 gttccggttcaagctgtggtggatgacgcagcggatgggcgtctccggccgcgacgtccc 569 Query: 373 cgttgagacgcagttcttgatcgtcgagg 401 | ||||| |||||| || ||||||||| Sbjct: 570 tctggagacccagttcatgctcgtcgagg 598
>gb|BT009384.1| Triticum aestivum clone wlm96.pk033.h5:fis, full insert mRNA sequence Length = 2653 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 318 ggttcaagatgtggtggatgacacagaggatggg 351 |||||||||||||||||||| | ||||||||||| Sbjct: 460 ggttcaagatgtggtggatggcgcagaggatggg 493
>emb|AJ133148.1|PAM133148 Persea americana mRNA for putative seed imbibition protein Length = 2673 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 318 ggttcaagatgtggtggatgacacagaggatggg 351 |||||||| | ||||||||||||||||||||||| Sbjct: 329 ggttcaagctttggtggatgacacagaggatggg 362
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence Length = 166888 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/55 (85%) Strand = Plus / Minus Query: 318 ggttcaagatgtggtggatgacacagaggatgggctcatcgggccgcgacatccc 372 |||||||| | ||||||||||| ||| |||||||| | || ||||||||| |||| Sbjct: 138663 ggttcaagctatggtggatgacccagcggatgggcacgtccggccgcgacgtccc 138609
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/55 (85%) Strand = Plus / Plus Query: 318 ggttcaagatgtggtggatgacacagaggatgggctcatcgggccgcgacatccc 372 |||||||| | ||||||||||| ||| |||||||| | || ||||||||| |||| Sbjct: 33526417 ggttcaagctatggtggatgacccagcggatgggcacgtccggccgcgacgtccc 33526471 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gggaggaagatgacggtggg 108 |||||||||||||||||||| Sbjct: 31850081 gggaggaagatgacggtggg 31850100 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ctggcggcgctgggggccac 159 |||||||||||||||||||| Sbjct: 8919868 ctggcggcgctgggggccac 8919849
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/55 (85%) Strand = Plus / Plus Query: 318 ggttcaagatgtggtggatgacacagaggatgggctcatcgggccgcgacatccc 372 |||||||| | ||||||||||| ||| |||||||| | || ||||||||| |||| Sbjct: 33616889 ggttcaagctatggtggatgacccagcggatgggcacgtccggccgcgacgtccc 33616943 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gggaggaagatgacggtggg 108 |||||||||||||||||||| Sbjct: 31940597 gggaggaagatgacggtggg 31940616 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ctggcggcgctgggggccac 159 |||||||||||||||||||| Sbjct: 8917703 ctggcggcgctgggggccac 8917684
>dbj|AK065100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N01, full insert sequence Length = 2646 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/55 (85%) Strand = Plus / Plus Query: 318 ggttcaagatgtggtggatgacacagaggatgggctcatcgggccgcgacatccc 372 |||||||| | ||||||||||| ||| |||||||| | || ||||||||| |||| Sbjct: 313 ggttcaagctatggtggatgacccagcggatgggcacgtccggccgcgacgtccc 367
>ref|XM_472912.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2217 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 204 gttcaggttcaagatctggtggatga 229
>gb|AF512549.1| Lycopersicon esculentum alkaline alpha-galactosidase seed imbibition protein (SIP) mRNA, complete cds Length = 2655 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 318 ggttcaagatgtggtggatgacacagaggatggg 351 |||||||| | ||||||||||||||||| ||||| Sbjct: 366 ggttcaagttatggtggatgacacagagaatggg 399
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 43982 gttcaggttcaagatctggtggatga 43957
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 390 tgatcgtcgaggccgccgatgg 411 |||||||||||||||||||||| Sbjct: 4215316 tgatcgtcgaggccgccgatgg 4215295
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 29823112 gttcaggttcaagatctggtggatga 29823087 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 24047003 gttcaggttcaagatctggtggatga 24046978
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 318 ggttcaagatgtggtggatgacacagaggatggg 351 |||||||| ||||||||||| | ||||||||||| Sbjct: 3677288 ggttcaagctgtggtggatggcgcagaggatggg 3677255
>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15 Length = 158821 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 318 ggttcaagatgtggtggatgacacagaggatggg 351 |||||||| ||||||||||| | ||||||||||| Sbjct: 71516 ggttcaagctgtggtggatggcgcagaggatggg 71483
>dbj|AK111421.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G09, full insert sequence Length = 996 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 314 gttcaggttcaagatctggtggatga 339
>dbj|AK100197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037L18, full insert sequence Length = 2606 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 272 gttcaggttcaagatctggtggatga 297
>dbj|AK099817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100E13, full insert sequence Length = 2449 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 228 gttcaggttcaagatctggtggatga 253
>gb|AC152941.2| Ornithorhynchus anatinus chromosome UNK clone OABb-24M14, complete sequence Length = 145914 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 85 cggggggaggaagatgacggtgggag 110 ||||||||||||| |||||||||||| Sbjct: 42776 cggggggaggaagttgacggtgggag 42751
>gb|BT024038.1| Zea mays clone EL01N0428D04 mRNA sequence Length = 1868 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 286 gttcaggttcaagatctggtggatga 311
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 13246 gttcaggttcaagatctggtggatga 13221
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 313 gttcaggttcaagatgtggtggatga 338 ||||||||||||||| |||||||||| Sbjct: 104038 gttcaggttcaagatctggtggatga 104013
>gb|AC138593.14| Mus musculus chromosome 8, clone RP24-280K15, complete sequence Length = 169176 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 323 aagatgtggtggatgacacagagga 347 ||||||||| ||||||||||||||| Sbjct: 119264 aagatgtggaggatgacacagagga 119240
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084P08 Length = 158656 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 ggggggaggaagatgacggtgggag 110 |||||||||| |||||||||||||| Sbjct: 99611 ggggggaggatgatgacggtgggag 99635
>gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome 8, complete sequence Length = 222981 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 aagatgtggtggatgacacagagga 347 ||||||||| ||||||||||||||| Sbjct: 197759 aagatgtggaggatgacacagagga 197783
>gb|AC127951.4| Rattus norvegicus 18 BAC CH230-150D9 (Children's Hospital Oakland Research Institute) complete sequence Length = 164101 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ggatgacacagaggatgggc 352 |||||||||||||||||||| Sbjct: 51810 ggatgacacagaggatgggc 51791
>ref|XM_324123.1| Neurospora crassa OR74A predicted protein (NCU04767.1) partial mRNA Length = 3678 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gggggaggaagatgacggtg 106 |||||||||||||||||||| Sbjct: 3235 gggggaggaagatgacggtg 3216
>ref|XM_955123.1| Neurospora crassa OR74A hypothetical protein (NCU04767.1) partial mRNA Length = 3678 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gggggaggaagatgacggtg 106 |||||||||||||||||||| Sbjct: 3235 gggggaggaagatgacggtg 3216
>emb|BX908811.1| Neurospora crassa DNA linkage group VI Cosmid contig H4H7 Length = 108058 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gggggaggaagatgacggtg 106 |||||||||||||||||||| Sbjct: 890 gggggaggaagatgacggtg 909
>emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone B15B10 Length = 77986 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gggggaggaagatgacggtg 106 |||||||||||||||||||| Sbjct: 72759 gggggaggaagatgacggtg 72778
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cgtccggtcggcccccgccg 257 |||||||||||||||||||| Sbjct: 233900 cgtccggtcggcccccgccg 233881
>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence Length = 165072 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ggacggcagcctggcggcgc 149 |||||||||||||||||||| Sbjct: 159062 ggacggcagcctggcggcgc 159043
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 tcggcccccgccggcagccggagc 268 |||||| ||||||||||||||||| Sbjct: 1690590 tcggccgccgccggcagccggagc 1690613
>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02, complete sequence Length = 126027 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ctggcggcgctgggggccac 159 |||||||||||||||||||| Sbjct: 110756 ctggcggcgctgggggccac 110737
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09, complete sequence Length = 143595 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ctggcggcgctgggggccac 159 |||||||||||||||||||| Sbjct: 44729 ctggcggcgctgggggccac 44710
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 ccggcagccggagcgtcttc 274 |||||||||||||||||||| Sbjct: 10220835 ccggcagccggagcgtcttc 10220816
>dbj|AP005554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_A10 Length = 95161 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 ccggcagccggagcgtcttc 274 |||||||||||||||||||| Sbjct: 21984 ccggcagccggagcgtcttc 21965
>dbj|AK121695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G07, full insert sequence Length = 807 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gggaggaagatgacggtggg 108 |||||||||||||||||||| Sbjct: 81 gggaggaagatgacggtggg 100
>dbj|AK098913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I11, full insert sequence Length = 937 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ctggcggcgctgggggccac 159 |||||||||||||||||||| Sbjct: 135 ctggcggcgctgggggccac 154
>dbj|AK062166.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B08, full insert sequence Length = 1007 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ctggcggcgctgggggccac 159 |||||||||||||||||||| Sbjct: 202 ctggcggcgctgggggccac 221
>dbj|AP000870.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-697H10, complete sequence Length = 179339 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 tcaagatgtggtggatgaca 340 |||||||||||||||||||| Sbjct: 115116 tcaagatgtggtggatgaca 115135
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggcagcctggcggcgctggg 153 |||||||||||||||||||| Sbjct: 1572463 ggcagcctggcggcgctggg 1572482
>emb|AL837507.5| Mouse DNA sequence from clone RP23-267B2 on chromosome 4, complete sequence Length = 99832 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ggtgcggggggaggaagatg 100 |||||||||||||||||||| Sbjct: 88582 ggtgcggggggaggaagatg 88563
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gggaggaagatgacggtggg 108 |||||||||||||||||||| Sbjct: 51334 gggaggaagatgacggtggg 51353
>dbj|AB056512.1| Arthrobacter globiformis genes for probable aminopeptidase, lipoamide dehydrogenase, probable dihydrolipoamide acyltransferase, partial and complete cds Length = 2932 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ccgccggcagccggagcgtc 271 |||||||||||||||||||| Sbjct: 2421 ccgccggcagccggagcgtc 2402 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,637,410 Number of Sequences: 3902068 Number of extensions: 2637410 Number of successful extensions: 58655 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57801 Number of HSP's gapped (non-prelim): 845 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)