ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26d09 |
|---|---|
| Clone Library Name | barley_pub |
>HOX1A_MAIZE (P46605) Homeobox protein HOX1A| Length = 719 Score = 36.2 bits (82), Expect = 0.037 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +1 Query: 310 RGRKGSQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEPVSPL 441 RG+KGSQ + Y S++S RVLRSTS K+ + +P+ Sbjct: 57 RGKKGSQGLTGQAYTLMSSNSDVRVLRSTSSSKTTSTEHVQAPV 100
>YJY1_SCHPO (Q9USN8) Hypothetical protein C132.01c in chromosome III| Length = 1021 Score = 32.3 bits (72), Expect = 0.54 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = +1 Query: 277 NDSSSPPTKG--------KRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 411 N+ S+P T G KRG+KGS++ +KK + + R R T+ ++S Sbjct: 751 NNQSTPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEES 803
>CCNL2_MOUSE (Q9JJA7) Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced| expression protein) (PCEE) Length = 518 Score = 32.0 bits (71), Expect = 0.70 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Frame = +1 Query: 229 DKTSASGLVQENKKVGNDSSSPPTKGKRGR--KGSQITASKK-----YLRRSAHSSARVL 387 D S SG + + + S SPP + RG KGS++ S+K YL + H S Sbjct: 404 DSGSTSGGSKSQSRSRSRSDSPPRQVHRGAPYKGSEVRGSRKSKDCKYLTQKPHKSRS-- 461 Query: 388 RSTSKDKSKT 417 RS+S+ +S++ Sbjct: 462 RSSSRSRSRS 471
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)| [Contains: Micronuclear linker histone-alpha; Micronuclear linker histone-beta; Micronuclear linker histone-delta; Micronuclear linker histone-gamma] Length = 633 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = +1 Query: 232 KTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 411 K+S+ G ++N K S S + RK + + SKK + RS SK KS Sbjct: 493 KSSSKG--KKNSKSNTRSKSKSKSASKSRKNA--SKSKKDTTNHGRQTRSKSRSESKSKS 548 Query: 412 KTPNEP 429 + PN+P Sbjct: 549 EAPNKP 554
>VAC7_YEAST (P53950) Vacuolar segregation protein 7| Length = 1165 Score = 31.2 bits (69), Expect = 1.2 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Frame = +1 Query: 181 PISSRREGRSAVIIYMDKTSASGLVQENKKVGNDSSSPPTKG----KRGRKG-----SQI 333 P SS R +S++++ + AS + KK S++ PT + R S Sbjct: 143 PSSSLRNKKSSLLVASNPAFASDVELSKKKPAVISNNMPTSNIALYQTARSANIHGPSST 202 Query: 334 TASKKYLRRSAHSSARVLRSTSKDKSKTPNEPVSPL 441 +ASK + + SA S+ +++ S TP P+ PL Sbjct: 203 SASKAFRKASAFSNNTAPSTSNNIGSNTPPAPLLPL 238
>PGLRX_COCCA (Q00359) Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)| (Galacturan 1,4-alpha-galacturonidase) (Poly(1,4-alpha-D-galacturonide)galacturonohydrolase) Length = 446 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -3 Query: 214 PPTDLLCGN**ASPG-RLRVSLVELLSGGEDDPVNFFRSIEMCRGLAAASAPRAWRF 47 PP L G + PG R + +++ L GG+DD N +++ C P+ +F Sbjct: 36 PPVPFLPGKASSVPGSRNKTCMLKALGGGKDDSANILSAVKQCNNGGHVVFPKGQQF 92
>RED2_HUMAN (Q9NS39) Double-stranded RNA-specific editase B2 (EC 3.5.-.-)| (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2) Length = 739 Score = 31.2 bits (69), Expect = 1.2 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +1 Query: 235 TSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYL 354 +++S V+EN+ VGN ++ PP G R R G+ K+ L Sbjct: 63 STSSAEVKENRNVGNLAARPPPSGDRARGGAPGAKRKRPL 102
>VE2_HPV38 (Q80910) Regulatory protein E2| Length = 441 Score = 30.8 bits (68), Expect = 1.6 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 5/98 (5%) Frame = +1 Query: 160 P*VSQDWPISSRREGRSAVIIYMDKTSASGL---VQENKKVGNDSSSPPTKGKRGRKGSQ 330 P S P+ + S + TS S Q ++ G +SSP T +R RKG + Sbjct: 197 PVTSSTPPVGDSTDSASRAALPEPSTSVSPERPPSQTARRYGRKASSPSTTSRRQRKGQR 256 Query: 331 ITASKKYLRRSAHSSARVLRSTSKD--KSKTPNEPVSP 438 T + RR + S +R +D +S + VSP Sbjct: 257 ETTGTQ-RRRKSRSRSRSTNRGGRDTRRSSSRGSSVSP 293
>YR871_MIMIV (Q5UP41) Hypothetical protein R871| Length = 561 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +1 Query: 277 NDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDKS 411 N SSS RGR + +SKK+ H S++ +S+ +DKS Sbjct: 122 NKSSSKDKSPSRGRSPKRHKSSKKHKSSKKHKSSKHDKSSKRDKS 166
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +1 Query: 172 QDWPISSRREGR-SAVIIYMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKK 348 Q+ ++SRR R SA K+ + ++K + S +KGK + S+++ S++ Sbjct: 320 QEEEVTSRRGSRRSAPTKAKGKSKTASKTSKSKSKASSKSKSKSKGKGQARASKLSKSRR 379 Query: 349 YLRRSAHSSARVLRSTSKDKSKTPNEP 429 Y+ V S+ ++ PN+P Sbjct: 380 YVN-------AVDSSSEEESDYDPNKP 399
>MSH6_YEAST (Q03834) MutS protein homolog 6| Length = 1242 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +1 Query: 325 SQITASKKYLRRSAHSSARVLRSTSKDKSKTPNEP 429 ++ T+ KK+ ++HSS+ R+ S+D SK + P Sbjct: 211 AETTSKKKFSYNTSHSSSPFTRNISRDNSKKKSRP 245
>GYRA_RICPR (P41080) DNA gyrase subunit A (EC 5.99.1.3)| Length = 905 Score = 29.3 bits (64), Expect = 4.5 Identities = 23/88 (26%), Positives = 42/88 (47%) Frame = +2 Query: 107 KKVNWVIFPSRKQFNKAYPKSPRTGLSVPAEKVGRRSSFIWTKHLLLVLFRRIKKLGMIH 286 K+V + S+K+ K R+GLS+ E + + F+ + H ++ F I K+ + Sbjct: 541 KRVPLSSYRSQKRGGKG-----RSGLSMRDEDITTQV-FVGSTHTPMLFFSNIGKVYSLK 594 Query: 287 HLLLPRGKGEGKGPRLQQVKSISGDLHI 370 LP +GKG + + S+ + HI Sbjct: 595 LYKLPLSNPQGKGRPMVNILSLQENEHI 622
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +1 Query: 229 DKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSK 402 D +SA QE+ + PPT+G+ R+G + A RRSA R R+ S+ Sbjct: 245 DNSSAQAPRQEDSRPARARPGPPTRGR--RRGRRPAAPGPASRRSARLRRRQPRTNSR 300
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +1 Query: 229 DKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSK 402 D +SA QE+ + PPT+G+ R+G + A RRSA R R+ S+ Sbjct: 245 DNSSAQAPRQEDSRPARARPGPPTRGR--RRGRRPAAPGPASRRSARLRRRQPRTNSR 300
>MOXR_PARDE (P29901) Protein moxR| Length = 339 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = -3 Query: 211 PTDLLCGN**ASPGRLRVSLVELLSGGEDDPVNFFRSIEMCR 86 PTDL+ A GR R+ +L GED V FF I R Sbjct: 79 PTDLIYSTHIAEDGRPRIEPGPVLEQGEDMAVFFFNEINRAR 120
>UNC87_CAEEL (P37806) Uncoordinated protein 87 (Protein unc-87)| Length = 576 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +2 Query: 77 GEAPAHFYRPKKVNWVIFPSRKQFNKAYPKSPRTGLSVPAEKVGRRSSFIW 229 GE P Y KV+ I PS+ +NK + T P + G+ IW Sbjct: 514 GELP---YEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDVKGKHLKRIW 561
>TTKA_DROME (P42282) Protein tramtrack, alpha isoform (Tramtrack p88)| (Repressor protein fushi tarazu) Length = 813 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/51 (23%), Positives = 26/51 (50%) Frame = +1 Query: 223 YMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSS 375 Y + + QE+ +++PP + G+KG++ ++ +RR A S+ Sbjct: 531 YQGNEAEATPAQEDSPAAETATAPPPAPRSGKKGAKRPIQRRRVRRKAQST 581
>DBP2_KLULA (Q6CIV2) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 554 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%) Frame = +1 Query: 172 QDWPISSRREGRSAVIIYMDKTSASGL-------VQENKKVGNDSSSPPTKGKRGRKGSQ 330 +DW ++ R GRS +++ D +A G+ V GN G+ GR GS Sbjct: 399 RDWVLAEFRSGRSPIMVATD-VAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGST 457 Query: 331 ITASKKYLRRSAHSSARVLRSTSKDKSKTPNE 426 TA + + A +++ + K P E Sbjct: 458 GTAISFFTEGNKSLGAALIKIMREAKQDIPEE 489
>TWST2_RAT (P97831) Twist-related protein 2| Length = 160 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%) Frame = +1 Query: 199 EGRSAVIIYMDK--TSASGLVQENKKVG--------NDSSSPPTKGKRGRKGSQITASKK 348 EG S+ + +D TS L ++ K+ G + PT GKRG+KGS S + Sbjct: 3 EGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFE 62 Query: 349 YLRRSAHSSARVLRST-SKDKSKTPNEPVSPL 441 L+ S R+L + + ++++ NE + L Sbjct: 63 ELQ-----SQRILANVRERQRTQSLNEAFAAL 89
>TWST2_MOUSE (Q9D030) Twist-related protein 2 (Dermis expressed protein 1)| (Dermo-1) Length = 160 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%) Frame = +1 Query: 199 EGRSAVIIYMDK--TSASGLVQENKKVG--------NDSSSPPTKGKRGRKGSQITASKK 348 EG S+ + +D TS L ++ K+ G + PT GKRG+KGS S + Sbjct: 3 EGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFE 62 Query: 349 YLRRSAHSSARVLRST-SKDKSKTPNEPVSPL 441 L+ S R+L + + ++++ NE + L Sbjct: 63 ELQ-----SQRILANVRERQRTQSLNEAFAAL 89
>TWST2_HUMAN (Q8WVJ9) Twist-related protein 2 (Dermis expressed protein 1)| (Dermo-1) Length = 160 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%) Frame = +1 Query: 199 EGRSAVIIYMDK--TSASGLVQENKKVG--------NDSSSPPTKGKRGRKGSQITASKK 348 EG S+ + +D TS L ++ K+ G + PT GKRG+KGS S + Sbjct: 3 EGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFE 62 Query: 349 YLRRSAHSSARVLRST-SKDKSKTPNEPVSPL 441 L+ S R+L + + ++++ NE + L Sbjct: 63 ELQ-----SQRILANVRERQRTQSLNEAFAAL 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,113,160 Number of Sequences: 219361 Number of extensions: 1521272 Number of successful extensions: 4012 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4008 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
