ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26d09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 307 aaaaggggaaggaaagggtcccagattacagcaagtaaaaagtatctccggagatctgca 366 ||||||||||||||||| ||||| || || ||||||||| |||| || ||||||| || Sbjct: 6738876 aaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttca 6738935 Query: 367 catagtagtgccagggttcttcgctctacttcaaaagacaagagtaagacaccta 421 ||||||| || |||||| ||||||||| | |||||| | |||| | ||||||||| Sbjct: 6738936 catagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacaccta 6738990
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 307 aaaaggggaaggaaagggtcccagattacagcaagtaaaaagtatctccggagatctgca 366 ||||||||||||||||| ||||| || || ||||||||| |||| || ||||||| || Sbjct: 68555 aaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttca 68614 Query: 367 catagtagtgccagggttcttcgctctacttcaaaagacaagagtaagacaccta 421 ||||||| || |||||| ||||||||| | |||||| | |||| | ||||||||| Sbjct: 68615 catagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacaccta 68669
>dbj|AB081341.1| Oryza sativa (japonica cultivar-group) HAZ1 gene for PHD-finger family homeodomain protein, partial cds Length = 5791 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 307 aaaaggggaaggaaagggtcccagattacagcaagtaaaaagtatctccggagatctgca 366 ||||||||||||||||| ||||| || || ||||||||| |||| || ||||||| || Sbjct: 252 aaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttca 311 Query: 367 catagtagtgccagggttcttcgctctacttcaaaagacaagagtaagacaccta 421 ||||||| || |||||| ||||||||| | |||||| | |||| | ||||||||| Sbjct: 312 catagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacaccta 366
>dbj|AB081340.1| Oryza sativa (japonica cultivar-group) HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds Length = 2997 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 307 aaaaggggaaggaaagggtcccagattacagcaagtaaaaagtatctccggagatctgca 366 ||||||||||||||||| ||||| || || ||||||||| |||| || ||||||| || Sbjct: 234 aaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttca 293 Query: 367 catagtagtgccagggttcttcgctctacttcaaaagacaagagtaagacaccta 421 ||||||| || |||||| ||||||||| | |||||| | |||| | ||||||||| Sbjct: 294 catagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacaccta 348
>dbj|AK121314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113A13, full insert sequence Length = 3259 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 307 aaaaggggaaggaaagggtcccagattacagcaagtaaaaagtatctccggagatctgca 366 ||||||||||||||||| ||||| || || ||||||||| |||| || ||||||| || Sbjct: 542 aaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttca 601 Query: 367 catagtagtgccagggttcttcgctctacttcaaaagacaagagtaagacaccta 421 ||||||| || |||||| ||||||||| | |||||| | |||| | ||||||||| Sbjct: 602 catagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacaccta 656
>dbj|AK101428.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038H23, full insert sequence Length = 3284 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 307 aaaaggggaaggaaagggtcccagattacagcaagtaaaaagtatctccggagatctgca 366 ||||||||||||||||| ||||| || || ||||||||| |||| || ||||||| || Sbjct: 540 aaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttca 599 Query: 367 catagtagtgccagggttcttcgctctacttcaaaagacaagagtaagacaccta 421 ||||||| || |||||| ||||||||| | |||||| | |||| | ||||||||| Sbjct: 600 catagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacaccta 654
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 59 gcgcggtgccgaggccgcggcga 81 ||||||||||||||||||||||| Sbjct: 599791 gcgcggtgccgaggccgcggcga 599813
>gb|DQ271003.1| Mustela vison clone VII1O6 microsatellite sequence Length = 1037 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 296 ctaccaaggggaaaaggggaagg 318 ||||||||||||||||||||||| Sbjct: 300 ctaccaaggggaaaaggggaagg 322
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 59 gcgcggtgccgaggccgcggcga 81 ||||||||||||||||||||||| Sbjct: 326663 gcgcggtgccgaggccgcggcga 326641
>ref|NM_189853.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1008 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 55 aggcgcgcggtgccgaggccgcggcgaggc 84 |||||||| |||||| |||||||||||||| Sbjct: 767 aggcgcgccgtgccgcggccgcggcgaggc 796
>gb|BC054135.1| Danio rerio zgc:63716, mRNA (cDNA clone MGC:63716 IMAGE:2602198), complete cds Length = 886 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 ccaaggggaaaaggggaaggaa 320 |||||||||||||||||||||| Sbjct: 159 ccaaggggaaaaggggaaggaa 180
>ref|NM_199847.1| Danio rerio zgc:63716 (zgc:63716), mRNA Length = 886 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 ccaaggggaaaaggggaaggaa 320 |||||||||||||||||||||| Sbjct: 159 ccaaggggaaaaggggaaggaa 180
>gb|AC097656.5| Homo sapiens BAC clone RP11-358D13 from 4, complete sequence Length = 81434 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 303 ggggaaaaggggaaggaaaggg 324 |||||||||||||||||||||| Sbjct: 38476 ggggaaaaggggaaggaaaggg 38455
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 55 aggcgcgcggtgccgaggccgcggcgaggc 84 |||||||| |||||| |||||||||||||| Sbjct: 25580745 aggcgcgccgtgccgcggccgcggcgaggc 25580774
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 55 aggcgcgcggtgccgaggccgcggcgaggc 84 |||||||| |||||| |||||||||||||| Sbjct: 34718 aggcgcgccgtgccgcggccgcggcgaggc 34747
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0560B08 Length = 128098 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 55 aggcgcgcggtgccgaggccgcggcgaggc 84 |||||||| |||||| |||||||||||||| Sbjct: 118015 aggcgcgccgtgccgcggccgcggcgaggc 118044
>emb|AL512639.8| Human DNA sequence from clone RP11-346G21 on chromosome 9, complete sequence Length = 164774 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 ggagaataaaaaagttgggaa 278 ||||||||||||||||||||| Sbjct: 19381 ggagaataaaaaagttgggaa 19401
>emb|AL008638.1|HS992D9 Human DNA sequence from clone CTA-992D9 on chromosome 22q12.1, complete sequence Length = 155147 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ctgcttctggtcttgttcagg 259 ||||||||||||||||||||| Sbjct: 1061 ctgcttctggtcttgttcagg 1041
>emb|BX908770.13| Zebrafish DNA sequence from clone CH211-198A12 in linkage group 13, complete sequence Length = 126240 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 ctcctcctaccaaggggaaaa 310 ||||||||||||||||||||| Sbjct: 56453 ctcctcctaccaaggggaaaa 56433
>emb|BX927129.10| Zebrafish DNA sequence from clone DKEY-158N21 in linkage group 13, complete sequence Length = 154491 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 ctcctcctaccaaggggaaaa 310 ||||||||||||||||||||| Sbjct: 5988 ctcctcctaccaaggggaaaa 5968
>emb|BX928754.9| Zebrafish DNA sequence from clone DKEY-169I10 in linkage group 13, complete sequence Length = 263849 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 ctcctcctaccaaggggaaaa 310 ||||||||||||||||||||| Sbjct: 184571 ctcctcctaccaaggggaaaa 184551
>gb|AC103967.4| Homo sapiens chromosome 15, clone CTD-3221M10, complete sequence Length = 201545 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 gggaaaaggggaaggaaaggg 324 ||||||||||||||||||||| Sbjct: 30591 gggaaaaggggaaggaaaggg 30611
>gb|AC013526.7| Homo sapiens, clone RP11-114I24, complete sequence Length = 156895 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 gggaaaaggggaaggaaaggg 324 ||||||||||||||||||||| Sbjct: 115425 gggaaaaggggaaggaaaggg 115445
>gb|AC022692.11| Homo sapiens chromosome 15, clone RP11-530L17, complete sequence Length = 173604 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gggaaaaggggaaggaaaggg 324 ||||||||||||||||||||| Sbjct: 6147 gggaaaaggggaaggaaaggg 6127
>emb|BX322787.5| Zebrafish DNA sequence from clone CH211-198H5 in linkage group 7, complete sequence Length = 92049 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gggaaaaggggaaggaaaggg 324 ||||||||||||||||||||| Sbjct: 26764 gggaaaaggggaaggaaaggg 26744
>emb|BX323031.7| Zebrafish DNA sequence from clone DKEYP-7B3 in linkage group 18, complete sequence Length = 164748 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 gggaaaaggggaaggaaaggg 324 ||||||||||||||||||||| Sbjct: 150636 gggaaaaggggaaggaaaggg 150656
>gb|U01530.1|MMU01530 Mus musculus BALB/c SCL protein gene, complete cds Length = 6791 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 caaggggaaaaggggaaggaa 320 ||||||||||||||||||||| Sbjct: 838 caaggggaaaaggggaaggaa 818
>emb|AJ131017.1|MMU131017 Mus musculus SCL gene locus Length = 86380 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 caaggggaaaaggggaaggaa 320 ||||||||||||||||||||| Sbjct: 60653 caaggggaaaaggggaaggaa 60633
>emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on chromosome 4, complete sequence Length = 201142 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 caaggggaaaaggggaaggaa 320 ||||||||||||||||||||| Sbjct: 166034 caaggggaaaaggggaaggaa 166014
>emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & CYP_b genes Length = 234411 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 caaggggaaaaggggaaggaa 320 ||||||||||||||||||||| Sbjct: 60653 caaggggaaaaggggaaggaa 60633
>ref|XM_529483.1| PREDICTED: Pan troglodytes LOC451857 (LOC451857), mRNA Length = 531 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 486 ggaaggaaagggtcccagat 505
>gb|AY827087.1| Homo sapiens vitamin D receptor gene, exon 9 and partial cds Length = 3712 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 2876 ggaaggaaagggtcccagat 2857
>ref|XM_513563.1| PREDICTED: Pan troglodytes similar to ecotropic viral integration site 5; neuroblastoma stage 4S gene (LOC457024), mRNA Length = 2811 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ggaatgattcatcatctcct 294 |||||||||||||||||||| Sbjct: 2593 ggaatgattcatcatctcct 2574
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tcatcatctcctcctaccaa 302 |||||||||||||||||||| Sbjct: 1211477 tcatcatctcctcctaccaa 1211496
>gb|AC163688.5| Mus musculus BAC clone CH25-316N15 from chromosome 12, complete sequence Length = 106789 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aaggggaaaaggggaaggaaaggg 324 |||||||||||||||||| ||||| Sbjct: 54065 aaggggaaaaggggaagggaaggg 54042
>gb|AC115508.5| Rattus norvegicus 2 BAC CH230-355B17 (Children's Hospital Oakland Research Institute) complete sequence Length = 209019 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tcctcctaccaaggggaaaa 310 |||||||||||||||||||| Sbjct: 120666 tcctcctaccaaggggaaaa 120647
>ref|XM_616848.2| PREDICTED: Bos taurus similar to ecotropic viral integration site 5 (LOC536706), mRNA Length = 2778 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ggaatgattcatcatctcct 294 |||||||||||||||||||| Sbjct: 2563 ggaatgattcatcatctcct 2544
>gb|BC076448.1| Danio rerio zgc:91818, mRNA (cDNA clone MGC:91818 IMAGE:7036609), complete cds Length = 1619 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 atcatttatatggacaaaac 236 |||||||||||||||||||| Sbjct: 844 atcatttatatggacaaaac 863
>gb|AC115928.10| Mus musculus chromosome 18, clone RP24-530D22, complete sequence Length = 182777 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 aaggggaaaaggggaaggaaaggg 324 |||||||||||||||||| ||||| Sbjct: 9552 aaggggaaaaggggaagggaaggg 9575
>ref|NM_001017535.1| Homo sapiens vitamin D (1,25- dihydroxyvitamin D3) receptor (VDR), transcript variant 2, mRNA Length = 4791 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 4004 ggaaggaaagggtcccagat 3985
>ref|NM_000376.2| Homo sapiens vitamin D (1,25- dihydroxyvitamin D3) receptor (VDR), transcript variant 1, mRNA Length = 4669 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 3882 ggaaggaaagggtcccagat 3863
>ref|NM_005665.4| Homo sapiens ecotropic viral integration site 5 (EVI5), mRNA Length = 7403 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ggaatgattcatcatctcct 294 |||||||||||||||||||| Sbjct: 2225 ggaatgattcatcatctcct 2206
>ref|XM_704861.1| Candida albicans SC5314 opaque-specific ABC transporter CDR3 fragment (CaO19.1312), mRNA Length = 2847 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 agaataaaaaagttgggaatgatt 283 |||||| ||||||||||||||||| Sbjct: 845 agaatacaaaagttgggaatgatt 868
>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence Length = 248320 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ctctacttcaaaagacaaga 409 |||||||||||||||||||| Sbjct: 75472 ctctacttcaaaagacaaga 75491
>gb|AY350710.1| Brassica oleracea clone BAC Bo37N21, partial sequence Length = 78346 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tgattcatcatctcctcctaccaa 302 ||||||||||||||| |||||||| Sbjct: 55739 tgattcatcatctccacctaccaa 55762
>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188294 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 ggggaaaaggggaaggaaag 322 |||||||||||||||||||| Sbjct: 138804 ggggaaaaggggaaggaaag 138823
>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence Length = 139630 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 aaggggaaaaggggaaggaaaggg 324 |||||||||||||||||| ||||| Sbjct: 111322 aaggggaaaaggggaagggaaggg 111345
>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds Length = 590284 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ggggaaaaggggaaggaaag 322 |||||||||||||||||||| Sbjct: 84211 ggggaaaaggggaaggaaag 84192
>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence Length = 230293 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 aaggggaaaaggggaaggaaaggg 324 ||||||||||||| |||||||||| Sbjct: 120469 aaggggaaaagggaaaggaaaggg 120492
>gb|AC132413.3| Mus musculus BAC clone RP23-375I11 from chromosome 1, complete sequence Length = 191541 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 caggagaataaaaaagttgg 275 |||||||||||||||||||| Sbjct: 185284 caggagaataaaaaagttgg 185303
>gb|AC121566.3| Mus musculus BAC clone RP23-225D10 from 1, complete sequence Length = 152435 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 caggagaataaaaaagttgg 275 |||||||||||||||||||| Sbjct: 37215 caggagaataaaaaagttgg 37234
>gb|AC124745.4| Mus musculus BAC clone RP23-236O12 from 14, complete sequence Length = 143589 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ggaaaaggggaaggaaaggg 324 |||||||||||||||||||| Sbjct: 55104 ggaaaaggggaaggaaaggg 55085
>ref|XM_537075.2| PREDICTED: Canis familiaris similar to ecotropic viral integration site 5 (LOC479950), mRNA Length = 2878 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ggaatgattcatcatctcct 294 |||||||||||||||||||| Sbjct: 2663 ggaatgattcatcatctcct 2644
>gb|AC110221.6| Mus musculus chromosome 3, clone RP24-567P14, complete sequence Length = 138203 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gcagttcaacaaggcttacc 161 |||||||||||||||||||| Sbjct: 53178 gcagttcaacaaggcttacc 53159
>emb|AL596306.4| Human DNA sequence from clone RP11-304M3 on chromosome 13 Contains the 3' end of the COG6 gene for component of oligomeric golgi complex 6 (KIAA1134, COD2) and a novel protein similar to RIKEN cDNA A430101B06 gene (MGC1307) pseudogene, complete sequence Length = 69027 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gggaaaaggggaaggaaagg 323 |||||||||||||||||||| Sbjct: 40859 gggaaaaggggaaggaaagg 40840
>emb|AL162591.16| Human DNA sequence from clone RP11-350G8 on chromosome 1 Contains the 3' end of the AQP10 gene for aquaporin 10, the ATP8B2 gene for ATPase, Class I, type 8B, member 2, a mitochondrial ribosomal protein S33 (MRPS33) pseudogene, a novel gene, the IL6R gene for interleukin 6 receptor, a proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 (PSMD8) pseduogene, a novel gene (LOC126669), the 5' end of a novel gene (DKFZp434M202) and a CpG island, complete sequence Length = 201167 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gaggccgcggcgaggccccg 88 |||||||||||||||||||| Sbjct: 21839 gaggccgcggcgaggccccg 21820
>gb|AY342401.1| Homo sapiens vitamin D (1,25-dihydroxyvitamin D3) receptor (VDR) gene, complete cds Length = 67076 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 64639 ggaaggaaagggtcccagat 64620
>gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125990 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 catagtagtgccagggttct 386 |||||||||||||||||||| Sbjct: 43511 catagtagtgccagggttct 43492
>emb|X89761.1|ZMHOX2BGN Z.mays mRNA for homeobox 2b protein Length = 4964 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 338 caagtaaaaagtatctccggagatctgcacatagtagtgccagggttcttcgctct 393 ||||||||| ||||| | ||| ||| |||||||||||| || |||||||||||| Sbjct: 143 caagtaaaaggtatcccttgaggtctccacatagtagtggtagagttcttcgctct 198
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 380 gggttcttcgctctacttcaaaagacaa 407 ||||||| ||||||||||||||| |||| Sbjct: 1060897 gggttctccgctctacttcaaaaaacaa 1060870
>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains three novel genes, a ribosomal protein L9 (Rpl9) pseudogene, a transcription elongation factor A (SII) 3 (Tcea3) pseudogene and the 3' end of the Fbxw1b gene for F-box and WD-40 domain protein 1B, complete sequence Length = 251085 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aaggggaaaaggggaaggaaaggg 324 |||||||||||||||||| ||||| Sbjct: 142123 aaggggaaaaggggaagggaaggg 142100
>emb|AL772409.4| Mouse DNA sequence from clone RP23-323L8 on chromosome 11 Contains the 5' end of the Fgf18 gene for fibroblast growth factor 18, the Npm1 gene for nucleophosmin 1, a single-stranded DNA binding protein 1 (Ssbp1) pseudogene, the Tlx3 gene for T-cell leukemia, homeobox 3, a novel gene, the 3' end of the Ranbp17 gene for RAN binding protein 17, a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene and four CpG islands, complete sequence Length = 161564 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aaggggaaaaggggaaggaaaggg 324 |||| ||||||||||||||||||| Sbjct: 111927 aaggagaaaaggggaaggaaaggg 111904
>emb|AL805944.8| Mouse DNA sequence from clone RP24-387A5 on chromosome 4 Contains a novel pseudogene, complete sequence Length = 195873 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 aaggggaaaaggggaaggaaaggg 324 |||||| ||||||||||||||||| Sbjct: 113517 aagggggaaaggggaaggaaaggg 113540
>emb|CR859646.1| Pongo pygmaeus mRNA; cDNA DKFZp469H1213 (from clone DKFZp469H1213) Length = 4794 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 4009 ggaaggaaagggtcccagat 3990
>ref|NM_001002693.1| Danio rerio zgc:91818 (zgc:91818), mRNA Length = 1619 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 atcatttatatggacaaaac 236 |||||||||||||||||||| Sbjct: 844 atcatttatatggacaaaac 863
>gb|AC104456.2| Homo sapiens chromosome 1 clone RP5-1014C4, complete sequence Length = 153125 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggaatgattcatcatctcct 294 |||||||||||||||||||| Sbjct: 124677 ggaatgattcatcatctcct 124696
>gb|AC092530.35| Rattus norvegicus clone rp32-28p17, complete sequence Length = 221618 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aaggggaaaaggggaaggaaaggg 324 |||| ||||||||||||||||||| Sbjct: 68592 aaggagaaaaggggaaggaaaggg 68569
>gb|AC011120.11| Homo sapiens chromosome 17, clone RP11-171G2, complete sequence Length = 167746 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 caaaacatctgcttctggtc 250 |||||||||||||||||||| Sbjct: 121129 caaaacatctgcttctggtc 121148
>gb|AC026992.12| Homo sapiens chromosome 15, clone RP11-352D13, complete sequence Length = 177902 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 ggaaaaggggaaggaaagggtccc 328 ||||||||||||||||||| |||| Sbjct: 116397 ggaaaaggggaaggaaaggatccc 116374
>gb|AC096634.2| Homo sapiens chromosome 1 clone RP11-66M7, complete sequence Length = 163926 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 ggggaaaaggggaaggaaag 322 |||||||||||||||||||| Sbjct: 37411 ggggaaaaggggaaggaaag 37430
>gb|AC012195.9| Homo sapiens chromosome 15, clone RP11-44F11, complete sequence Length = 106057 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 aagttgggaatgattcatca 288 |||||||||||||||||||| Sbjct: 78277 aagttgggaatgattcatca 78258
>gb|AC093019.2| Homo sapiens chromosome 1 clone RP4-714D9, complete sequence Length = 116911 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gaaaaggggaaggaaagggt 325 |||||||||||||||||||| Sbjct: 75847 gaaaaggggaaggaaagggt 75828
>gb|AF008915.1|AF008915 Homo sapiens EVI5 homolog mRNA, complete cds Length = 7383 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ggaatgattcatcatctcct 294 |||||||||||||||||||| Sbjct: 2226 ggaatgattcatcatctcct 2207
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tccaggcgcgcggtgccgag 71 |||||||||||||||||||| Sbjct: 3989495 tccaggcgcgcggtgccgag 3989476
>ref|XM_572101.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2470 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tcatcatctcctcctaccaa 302 |||||||||||||||||||| Sbjct: 1988 tcatcatctcctcctaccaa 1969
>gb|AC011114.5|AC011114 Homo sapiens, clone RP11-115A23, complete sequence Length = 101971 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 aagttgggaatgattcatca 288 |||||||||||||||||||| Sbjct: 47753 aagttgggaatgattcatca 47772
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 aatgattcatcatctcctcc 296 |||||||||||||||||||| Sbjct: 8303272 aatgattcatcatctcctcc 8303253
>gb|AC096728.3| Homo sapiens BAC clone RP11-53C16 from 4, complete sequence Length = 82696 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tggaagctgccaaatctcca 55 |||||||||||||||||||| Sbjct: 10514 tggaagctgccaaatctcca 10495
>dbj|AB002168.2| Homo sapiens gene for vitamin D receptor, complete cds Length = 7371 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 6602 ggaaggaaagggtcccagat 6583
>gb|AC004466.1| Homo sapiens 12 PAC RPCI5-1057I20 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 122186 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 48826 ggaaggaaagggtcccagat 48807
>gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complete sequence Length = 176709 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttcaggagaataaaaaagtt 273 |||||||||||||||||||| Sbjct: 55939 ttcaggagaataaaaaagtt 55920
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 aatgattcatcatctcctcc 296 |||||||||||||||||||| Sbjct: 79943 aatgattcatcatctcctcc 79924
>dbj|AK107500.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D12, full insert sequence Length = 2258 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 aatgattcatcatctcctcc 296 |||||||||||||||||||| Sbjct: 1429 aatgattcatcatctcctcc 1410
>ref|NM_001010846.1| Homo sapiens Src homology 2 domain containing E (SHE), mRNA Length = 6243 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gaggccgcggcgaggccccg 88 |||||||||||||||||||| Sbjct: 67 gaggccgcggcgaggccccg 48
>gb|AC151994.3| Mus musculus BAC clone RP23-188B20 from 14, complete sequence Length = 208952 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ggaaaaggggaaggaaaggg 324 |||||||||||||||||||| Sbjct: 31349 ggaaaaggggaaggaaaggg 31330
>gb|AC154543.2| Mus musculus BAC clone RP23-228E21 from 12, complete sequence Length = 197876 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aaggggaaaaggggaaggaa 320 |||||||||||||||||||| Sbjct: 81889 aaggggaaaaggggaaggaa 81908
>gb|AC167563.3| Mus musculus BAC clone RP24-392I11 from chromosome 16, complete sequence Length = 201682 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tcttgttcaggagaataaaa 268 |||||||||||||||||||| Sbjct: 90224 tcttgttcaggagaataaaa 90243
>emb|CT010578.16| Mouse DNA sequence from clone RP23-268O1 on chromosome 12, complete sequence Length = 180650 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aaggggaaaaggggaaggaa 320 |||||||||||||||||||| Sbjct: 88068 aaggggaaaaggggaaggaa 88087
>gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, complete sequence Length = 165778 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 catcatttatatggacaaaa 235 |||||||||||||||||||| Sbjct: 10361 catcatttatatggacaaaa 10342
>dbj|AK115260.1| Ciona intestinalis cDNA, clone:cieg041m22, full insert sequence Length = 1355 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tcttggaagctgccaaatct 52 |||||||||||||||||||| Sbjct: 241 tcttggaagctgccaaatct 260
>gb|U89714.1|CAU89714 Candida albicans opaque-specific ABC transporter (CDR3) gene, complete cds Length = 5317 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 agaataaaaaagttgggaatgatt 283 |||||| ||||||||||||||||| Sbjct: 1440 agaatacaaaagttgggaatgatt 1463
>dbj|AB209513.1| Homo sapiens mRNA for ecotropic viral integration site 5 variant protein Length = 3363 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ggaatgattcatcatctcct 294 |||||||||||||||||||| Sbjct: 1414 ggaatgattcatcatctcct 1395
>gb|AC154758.2| Mus musculus BAC clone RP24-406J8 from chromosome 17, complete sequence Length = 151012 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aaggggaaaaggggaaggaa 320 |||||||||||||||||||| Sbjct: 46968 aaggggaaaaggggaaggaa 46987
>gb|J03258.1|HUMVDR Human vitamin D receptor mRNA, complete cds Length = 4604 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ggaaggaaagggtcccagat 332 |||||||||||||||||||| Sbjct: 3836 ggaaggaaagggtcccagat 3817
>gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, complete sequence Length = 206926 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 catcatttatatggacaaaa 235 |||||||||||||||||||| Sbjct: 5511 catcatttatatggacaaaa 5530
>gb|AC080037.11| Homo sapiens chromosome 17, clone CTD-3010D24, complete sequence Length = 248996 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 caaaacatctgcttctggtc 250 |||||||||||||||||||| Sbjct: 228244 caaaacatctgcttctggtc 228263 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,031,591 Number of Sequences: 3902068 Number of extensions: 4031591 Number of successful extensions: 87983 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87533 Number of HSP's gapped (non-prelim): 450 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
