ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26d08 |
|---|---|
| Clone Library Name | barley_pub |
>RIR1_ARATH (Q9SJ20) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase R1 subunit) (AtRNR1) Length = 816 Score = 202 bits (513), Expect = 5e-52 Identities = 98/123 (79%), Positives = 106/123 (86%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 MYVVKRDGR ETVHFDKITARLKKLSYGLS +HCDPVLVAQKVCAGVYKGVTTSQLD Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 +HPDYASLAARIAVSNLHKNTKKSFSETIKDM+ H N+RSGL SPLIA+D+ Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120 Query: 449 YEV 457 +E+ Sbjct: 121 FEI 123
>RIR1_NEUCR (Q9UW15) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase large subunit) Length = 929 Score = 144 bits (363), Expect = 1e-34 Identities = 71/122 (58%), Positives = 85/122 (69%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 MYV KRDGR E V FDKITAR+ +L YGL H DPV + QKV +GVY GVTT+QLD Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 +HPDYA LAARIAVSNLHK TKK +S I ++Y + N R+G SP+IA+D+ Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPMIAKDV 120 Query: 449 YE 454 YE Sbjct: 121 YE 122
>RIR1_YEAST (P21524) Ribonucleoside-diphosphate reductase large chain 1 (EC| 1.17.4.1) (Ribonucleotide reductase large subunit 1) (Ribonucleotide reductase R1 subunit 1) Length = 888 Score = 136 bits (343), Expect = 3e-32 Identities = 63/123 (51%), Positives = 85/123 (69%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 MYV KRDGR E V FDKITAR+ +L YGL +H D V V Q++ +GVY+GVTT +LD Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 HPDYA+LAARIA+SNLHK T K FS+ ++D+Y + N +G +P+I++D+ Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120 Query: 449 YEV 457 Y + Sbjct: 121 YNI 123
>RIR1_CAEEL (Q03604) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleotide reductase large chain) Length = 788 Score = 133 bits (334), Expect = 3e-31 Identities = 64/122 (52%), Positives = 86/122 (70%) Frame = +2 Query: 92 YVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXXX 271 YVVKRDGR E VHFDKIT+R++KLSYGL+ + DPV VA KV +G+YKGVTT +LD Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67 Query: 272 XXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDIY 451 HP+YA LAARIAVSNLHK T K FSE +K ++ ++ +G +P+I+++ + Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127 Query: 452 EV 457 + Sbjct: 128 AI 129
>RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 812 Score = 133 bits (334), Expect = 3e-31 Identities = 64/124 (51%), Positives = 84/124 (67%) Frame = +2 Query: 86 KMYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXX 265 K+YV+KRDGR E VHFDKIT+R++KL Y L+ + DPV + +V G+Y GVTT +LD Sbjct: 11 KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70 Query: 266 XXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAED 445 +HPDYA LAARIAVSNLHK TKK+FS+ +D+Y H N+ + PL++E Sbjct: 71 AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEF 130 Query: 446 IYEV 457 Y V Sbjct: 131 HYNV 134
>RIR1_VARV (P32984) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 771 Score = 132 bits (332), Expect = 5e-31 Identities = 63/123 (51%), Positives = 84/123 (68%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V+KR+G E V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 HPDYA LAARIAVSNLHK TKK FSE +KD++ + N ++G SP+I+ Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMKDLFNYVNPKNGKHSPIISSIT 120 Query: 449 YEV 457 +V Sbjct: 121 MDV 123
>RIR1_VACCV (P12848) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 771 Score = 130 bits (327), Expect = 2e-30 Identities = 61/117 (52%), Positives = 82/117 (70%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V+KR+G E V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIA 439 HPDYA LAARIAVSNLHK TKK FSE ++D++ + N ++G SP+I+ Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIIS 117
>RIR1_VACCC (P20503) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 771 Score = 130 bits (327), Expect = 2e-30 Identities = 61/117 (52%), Positives = 82/117 (70%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V+KR+G E V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIA 439 HPDYA LAARIAVSNLHK TKK FSE ++D++ + N ++G SP+I+ Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIIS 117
>RIR1_VACCA (Q76RD8) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 771 Score = 130 bits (327), Expect = 2e-30 Identities = 61/117 (52%), Positives = 82/117 (70%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V+KR+G E V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIA 439 HPDYA LAARIAVSNLHK TKK FSE ++D++ + N ++G SP+I+ Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIIS 117
>RIR1_SCHPO (P36602) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 811 Score = 130 bits (326), Expect = 2e-30 Identities = 62/123 (50%), Positives = 83/123 (67%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V KRDGR E V FDKITAR+ +L YGL +H DPV + QKV +GVY GVTT +LD Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 HPDYA LAARIAVSNLHK T+K FS ++ ++ + N ++ +P+I++ I Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKI 120 Query: 449 YEV 457 Y++ Sbjct: 121 YDI 123
>RIR1_HUMAN (P23921) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 792 Score = 130 bits (326), Expect = 2e-30 Identities = 61/123 (49%), Positives = 82/123 (66%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V+KRDGR E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 HPDYA LAARIAVSNLHK TKK FS+ ++D+Y + N +G SP++A+ Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120 Query: 449 YEV 457 ++ Sbjct: 121 LDI 123
>RIR3_YEAST (P21672) Ribonucleoside-diphosphate reductase large chain 2 (EC| 1.17.4.1) (Ribonucleotide reductase large subunit 2) (Ribonucleotide reductase DNA damage-inducible regulatory subunit 2) (Ribonucleotide reductase R1 subunit 2) Length = 869 Score = 129 bits (325), Expect = 3e-30 Identities = 62/123 (50%), Positives = 83/123 (67%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 MYV+KRDGR E V FDKIT+R+ +LSYGL D V V Q++ +GVY GVTT +LD Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 HPDYA+LAARIA+SNLHK T K FS+ I+D++ N +G +P+I+++I Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVIEDLHDWINPATGKHAPMISDEI 120 Query: 449 YEV 457 Y + Sbjct: 121 YNI 123
>RIR1_MOUSE (P07742) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 792 Score = 129 bits (325), Expect = 3e-30 Identities = 61/123 (49%), Positives = 81/123 (65%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V+KRDGR E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 HPDYA LAARIAVSNLHK TKK FS+ ++D+Y + N +G SP++A Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120 Query: 449 YEV 457 ++ Sbjct: 121 LDI 123
>RIR1_BRARE (P79732) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) (Ribonucleotide reductase protein R1 class I) Length = 794 Score = 125 bits (314), Expect = 6e-29 Identities = 60/123 (48%), Positives = 81/123 (65%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 M+V+KRDG E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 HPDYA LAARIAVSNLHK TKK FSE ++D+Y + N + SP+I+++ Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKETKKVFSEVMEDLYNYVNPLNSRHSPMISKET 120 Query: 449 YEV 457 ++ Sbjct: 121 LDI 123
>RIR1_CRYPV (O61065) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase R1 subunit) Length = 803 Score = 97.1 bits (240), Expect = 2e-20 Identities = 50/122 (40%), Positives = 70/122 (57%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 MYVV R G E V FD+I +R+ KLSYGL DP V Q V G+Y G+ TS+LD Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGL-HPLVDPARVTQAVINGLYSGIKTSELDELA 59 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 +H D++ LAARI+ SNLHKNT + +Y ++ + G +PLI++ + Sbjct: 60 SQTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLY-NFKDNQGCPAPLISKPV 118 Query: 449 YE 454 Y+ Sbjct: 119 YD 120
>RIR1_PLAF4 (P50648) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase R1 subunit) Length = 806 Score = 92.4 bits (228), Expect = 5e-19 Identities = 48/122 (39%), Positives = 70/122 (57%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 MYV+ R G E + FD+I R+++LSYGL E DP V Q V G+Y G+ T +LD Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGL-HELVDPARVTQGVINGMYSGIKTCELDELA 59 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 +HPD++ LAARI NLHKNT +E + +Y Y + G + LI++++ Sbjct: 60 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDVRGRPASLISKEV 118 Query: 449 YE 454 Y+ Sbjct: 119 YD 120
>RIR1_PLAFG (P50647) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase R1 subunit) Length = 804 Score = 88.2 bits (217), Expect = 1e-17 Identities = 45/122 (36%), Positives = 68/122 (55%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXX 268 MYV+ R G E + FD+I R+++LSYGL + P V Q V G+Y + T +LD Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60 Query: 269 XXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDI 448 +HPD++ LAARI NLHKNT +E + +Y Y + G + LI++++ Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDGRGRPASLISKEV 119 Query: 449 YE 454 Y+ Sbjct: 120 YD 121
>RIR1_TRYBB (O15909) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase R1 subunit) Length = 838 Score = 71.2 bits (173), Expect = 1e-12 Identities = 37/122 (30%), Positives = 66/122 (54%) Frame = +2 Query: 95 VVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXXXX 274 V KRDG E + +R+ L G+ + D + + V GV +G++TS LD Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67 Query: 275 XXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDIYE 454 HPDY LA R+AV+ LHK T +S ++ + ++ H ++ + +PLI+E++++ Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD 127 Query: 455 VS 460 ++ Sbjct: 128 IA 129
>RIR1_MIMIV (Q7T6Y8) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 881 Score = 45.1 bits (105), Expect = 1e-04 Identities = 28/115 (24%), Positives = 52/115 (45%) Frame = +2 Query: 107 DGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXXXXXXXX 286 +G + + + I ++K+ + H D + + + + T +D Sbjct: 75 NGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFPKLKSINTIKDIDNQIISTASE 134 Query: 287 XXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDIY 451 H DY +A I ++NLH NT F ET + +Y + +E S +P+I+E+IY Sbjct: 135 MVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNKSE-SNKNAPIISENIY 188
>RIR1_BUCAI (P57276) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 761 Score = 45.1 bits (105), Expect = 1e-04 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQ-KVCAGV--YKGVTTSQL- 256 ++V KRDGR E ++ DKI L S GL D V V+Q ++C+ + Y +TT + Sbjct: 5 LFVTKRDGRKEKINLDKIHKVLNWASEGL-----DDVSVSQVELCSRIQFYNNITTINIH 59 Query: 257 DXXXXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSF 370 + PDY +AAR+A+ +L K F Sbjct: 60 ETIIKAAADLISQDTPDYQYMAARLAIFHLRKKAYGQF 97
>RIR1_ENCCU (Q8SR37) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 768 Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/115 (22%), Positives = 53/115 (46%) Frame = +2 Query: 113 RTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXXXXXXXXXX 292 ++E + D I +R++ L H D + +++ +G + +T + Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70 Query: 293 XSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDIYEV 457 HP+Y +++RI VS +H+ T SF E IK + H +++E++Y + Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIKYIQKHRG--------MVSEEMYGI 117
>RIR1_SALTY (P37426) Ribonucleoside-diphosphate reductase 1 alpha subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase 1 R1 subunit) (Ribonucleotide reductase 1) (B1 protein) Length = 761 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQL-DXX 265 + V KRDGRTE ++ DKI L + GL+ V + + Y G+ TS + + Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHI--QFYDGIKTSDIHETI 62 Query: 266 XXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSF 370 PDY LAAR+A+ +L K F Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF 97
>RIR1_ECOLI (P00452) Ribonucleoside-diphosphate reductase 1 alpha subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase 1 R1 subunit) (Ribonucleotide reductase 1) (B1 protein) Length = 761 Score = 41.6 bits (96), Expect = 0.001 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQL-DXX 265 + V KRDG TE ++ DKI L + GL V + + Y G+ TS + + Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62 Query: 266 XXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSF 370 PDY LAAR+A+ +L K F Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF 97
>RIR1_AQUAE (O66503) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 801 Score = 40.4 bits (93), Expect = 0.002 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQL-DXX 265 MYV+KR GR E + +KI +K GL + DP+ + G+TT ++ Sbjct: 3 MYVIKRSGRKEKLDINKIRIAIKFACEGL---NVDPLELEADAQIQFRDGITTKEIQQLL 59 Query: 266 XXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKD---MYLHYNERS 415 PD+ AAR+ + +L+K+ +++D Y YN ++ Sbjct: 60 IKTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKN 112
>RIR1_HAEIN (P43754) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 756 Score = 39.7 bits (91), Expect = 0.004 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQL-DXX 265 + V KRDG E ++ DKI + + GL V + + Y+G+ TS + + Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHI--QFYEGIRTSDIHETI 62 Query: 266 XXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSF 370 PDY LAAR+A+ +L K F Sbjct: 63 IKAAADLISKDSPDYQYLAARLAIFHLRKKAYGHF 97
>RIR1_BUCAP (Q8K9W3) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 763 Score = 38.5 bits (88), Expect = 0.009 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQL-DXX 265 ++V KR+G+ E ++ DKI L + GL V + ++ Y ++T + + Sbjct: 5 LFVTKRNGKKEKINLDKIHKVLNWAAKGLENISVSQVELRSRI--QFYNNISTVNIHETI 62 Query: 266 XXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLH 400 + PDY +AAR+A+ +L K F ++Y H Sbjct: 63 IKAAADLISENTPDYQYMAARLAIFHLRKKAYGQFEP--PNLYYH 105
>RIR1_ASFB7 (P42491) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 778 Score = 38.1 bits (87), Expect = 0.012 Identities = 19/52 (36%), Positives = 32/52 (61%) Frame = +2 Query: 299 HPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDIYE 454 H DY++LAAR++V LH++T SFS+ ++ L + LSP + +Y+ Sbjct: 48 HYDYSTLAARLSVYQLHQSTASSFSKAVR---LQAAQSCSRLSPQFVDVVYK 96
>Y832_METJA (Q58242) Hypothetical protein MJ0832 [Contains: Mja rnr-1 intein;| Mja rnr-2 intein] Length = 1750 Score = 37.7 bits (86), Expect = 0.016 Identities = 20/57 (35%), Positives = 34/57 (59%) Frame = +2 Query: 86 KMYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQL 256 + YV+KRD R E + +K+ L ++ G++ D ++ +VCA VY G+TT +L Sbjct: 13 EFYVIKRDKRKEKFNVNKLAKSL--INSGVNYGDLDTII--SEVCAKVYNGITTDEL 65
>RIR1_BUCBP (Q89AS4) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 761 Score = 37.0 bits (84), Expect = 0.027 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Frame = +2 Query: 89 MYVVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQL-DXX 265 ++V KR+G+ E ++ DKI L + GL E+ VA K Y + T+ + + Sbjct: 5 LFVTKRNGKIELINLDKIHRVLNWAAKGL--ENISISQVALKSRIQFYNNIKTTIIHETI 62 Query: 266 XXXXXXXXXXSHPDYASLAARIAVSNLHKNTKKSFS 373 + PDY +AAR+ + +L K F+ Sbjct: 63 IKAAADLISENSPDYQYMAARLTIFHLRKKAFGQFN 98
>RIR1_CHLTR (O84834) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 1047 Score = 36.2 bits (82), Expect = 0.047 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Frame = +2 Query: 95 VVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXXXX 274 V+ +DG T T+ ++ A L + + E D L+ A Y G+ S++ Sbjct: 239 VLSKDGSTYTMTHSQLLAHLAR-ACSRFPETTDAALLTDMAFANFYSGIKESEVVLACIM 297 Query: 275 XXXXXXXSHPDYASLAARIAVSNLHKNT--KKSFSETIKDMYLHYNER 412 PDYA +AA + + ++K K ++E ++ + + +R Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKR 345
>RIR1_CHLMU (Q9PL93) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 1047 Score = 33.9 bits (76), Expect = 0.23 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Frame = +2 Query: 95 VVKRDGRTETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDXXXXX 274 V+ +DG T + ++ ARL + + E D L+ + Y G+ S++ Sbjct: 239 VLSKDGSTYMITHSQLLARLAR-ACSRFPETTDAALLTDMAFSNFYSGIKESEVVLACIM 297 Query: 275 XXXXXXXSHPDYASLAARIAVSNLHKNT--KKSFSETIKDMYLHYNER 412 PDYA +AA + + ++K + E ++ +Y + +R Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALDRSRGDEDLEQVYRDHFKR 345
>RIR1_ASFM2 (P26685) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 779 Score = 33.5 bits (75), Expect = 0.30 Identities = 14/28 (50%), Positives = 22/28 (78%) Frame = +2 Query: 299 HPDYASLAARIAVSNLHKNTKKSFSETI 382 H DY++LAAR++V LH++T SFS+ + Sbjct: 49 HYDYSTLAARLSVYLLHQSTASSFSKAV 76
>RIR1_CHLPN (Q9Z6S5) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 1044 Score = 31.6 bits (70), Expect = 1.2 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%) Frame = +2 Query: 92 YVV-KRDGRTETVHFDKITARLKKLSYGLSQ--EHCDPVLVAQKVCAGVYKGVTTSQLDX 262 YVV K DG T + + T K+ S+ + + D L+A +Y G+ ++ Sbjct: 235 YVVQKEDG---TTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEDEVTT 291 Query: 263 XXXXXXXXXXXSHPDYASLAARIAVSNLHKNT 358 PDYA +AA + S+L++ T Sbjct: 292 ACIMAARANIEREPDYAFIAAELLTSSLYEET 323
>FLGK_BUCAI (P57428) Flagellar hook-associated protein 1 (HAP1)| Length = 543 Score = 31.2 bits (69), Expect = 1.5 Identities = 11/38 (28%), Positives = 24/38 (63%) Frame = +2 Query: 296 SHPDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNE 409 +HP+ +L R+ + N +N K+ + +K++Y +YN+ Sbjct: 27 NHPNNKTLGKRVVIENTVQNENKNSTVKVKEIYDNYND 64
>EPMIP_MOUSE (Q8VEH5) EPM2A-interacting protein 1 (Laforin-interacting protein)| Length = 606 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +2 Query: 302 PDYASLAARIAVSNLHKNTKKSFSETIKDMYLHYNERSGLLSPLIAEDIYEVS 460 P+YA ++ R+ ++ L NT +KD+ Y SG P+I Y+V+ Sbjct: 497 PEYAPISVRVELTKLQANTDLWNEYRVKDLGQFYAGLSGEAYPIIKGVAYKVA 549 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,690,475 Number of Sequences: 219361 Number of extensions: 465404 Number of successful extensions: 1605 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1580 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1596 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
