Clone Name | bastl26d07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA Length = 2952 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 359 cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418 |||||||| ||||||||||||||| |||||||| |||||||||| || || ||||||| Sbjct: 255 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 314 Query: 419 gctcctgctcaccgccccgccgctcatccagtcgcagctctccgaagccctc 470 |||||| |||||||| ||||| ||||||||| ||||||||||||| |||||| Sbjct: 315 gctcctcctcaccgcgccgcccctcatccaggcgcagctctccgaggccctc 366 Score = 83.8 bits (42), Expect = 5e-13 Identities = 45/46 (97%) Strand = Plus / Plus Query: 302 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347 ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 189 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 234 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 114 atggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctcc 173 ||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | |||||| Sbjct: 1 atggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctcc 60 Query: 174 cc 175 || Sbjct: 61 cc 62
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Minus Query: 359 cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418 |||||||| ||||||||||||||| |||||||| |||||||||| || || ||||||| Sbjct: 7481434 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 7481375 Query: 419 gctcctgctcaccgccccgccgctcatccagtcgcagctctccgaagccctc 470 |||||| |||||||| ||||| ||||||||| ||||||||||||| |||||| Sbjct: 7481374 gctcctcctcaccgcgccgcccctcatccaggcgcagctctccgaggccctc 7481323 Score = 83.8 bits (42), Expect = 5e-13 Identities = 45/46 (97%) Strand = Plus / Minus Query: 302 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347 ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 7481500 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 7481455 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 113 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 172 |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||| Sbjct: 7481689 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 7481630 Query: 173 ccc 175 ||| Sbjct: 7481629 ccc 7481627
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Minus Query: 359 cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418 |||||||| ||||||||||||||| |||||||| |||||||||| || || ||||||| Sbjct: 30226 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 30167 Query: 419 gctcctgctcaccgccccgccgctcatccagtcgcagctctccgaagccctc 470 |||||| |||||||| ||||| ||||||||| ||||||||||||| |||||| Sbjct: 30166 gctcctcctcaccgcgccgcccctcatccaggcgcagctctccgaggccctc 30115 Score = 83.8 bits (42), Expect = 5e-13 Identities = 45/46 (97%) Strand = Plus / Minus Query: 302 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347 ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 30292 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 30247 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 113 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 172 |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||| Sbjct: 30481 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 30422 Query: 173 ccc 175 ||| Sbjct: 30421 ccc 30419
>dbj|AK064696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F11, full insert sequence Length = 1754 Score = 119 bits (60), Expect = 9e-24 Identities = 99/112 (88%) Strand = Plus / Plus Query: 359 cgacgacggggaccacctcccgcccaacgactgcgtcatcatcaagacgcacatcctcca 418 |||||||| ||||||||||||||| |||||||| |||||||||| || || ||||||| Sbjct: 381 cgacgacgccgaccacctcccgccctccgactgcgccatcatcaaggcgaacctcctcca 440 Query: 419 gctcctgctcaccgccccgccgctcatccagtcgcagctctccgaagccctc 470 |||||| |||||||| ||||| ||||||||| ||||||||||||| |||||| Sbjct: 441 gctcctcctcaccgcgccgcccctcatccaggcgcagctctccgaggccctc 492 Score = 83.8 bits (42), Expect = 5e-13 Identities = 45/46 (97%) Strand = Plus / Plus Query: 302 ctccgtccatttcaagaacctcctccgccgccgctggcccaagccc 347 ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 315 ctccgtccagttcaagaacctcctccgccgccgctggcccaagccc 360 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 113 aatggaggtgccgccggagatgctcgacaccctggcgggctggttcgcgcagaccctctc 172 |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| | ||||| Sbjct: 126 aatggaggtggcgccggagacgctcgacaccctgtcggggtggttcgcgcagtcgctctc 185 Query: 173 ccc 175 ||| Sbjct: 186 ccc 188
>dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042B20, full insert sequence Length = 3625 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 397 tcatcaagacgcacatcctccagctcctgctcaccgccccgccgctcatccagtcgcagc 456 |||||||| || || ||||||||||||| |||||||| ||||| ||||||||| |||||| Sbjct: 423 tcatcaaggcgaacctcctccagctcctcctcaccgcgccgcccctcatccaggcgcagc 482 Query: 457 tctccgaagccctc 470 ||||||| |||||| Sbjct: 483 tctccgaggccctc 496
>dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114P05, full insert sequence Length = 3625 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 397 tcatcaagacgcacatcctccagctcctgctcaccgccccgccgctcatccagtcgcagc 456 |||||||| || || ||||||||||||| |||||||| ||||| ||||||||| |||||| Sbjct: 423 tcatcaaggcgaacctcctccagctcctcctcaccgcgccgcccctcatccaggcgcagc 482 Query: 457 tctccgaagccctc 470 ||||||| |||||| Sbjct: 483 tctccgaggccctc 496
>gb|AE012535.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 443 of 460 of the complete genome Length = 11047 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 407 gcacatcctccagctcctgctcaccgccccg 437 ||||||||||||||||| || |||||||||| Sbjct: 6695 gcacatcctccagctccggcccaccgccccg 6665
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 407 gcacatcctccagctcctgctcaccgccccg 437 ||||||||||||||||| || |||||||||| Sbjct: 4966180 gcacatcctccagctccggcccaccgccccg 4966150
>ref|NM_197274.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015K05.5), mRNA Length = 942 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 346 ccgccgacgacgccgacgacggggac 371 ||||||||||||||||||||| |||| Sbjct: 37 ccgccgacgacgccgacgacgaggac 12
>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete sequence Length = 123292 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 346 ccgccgacgacgccgacgacggggac 371 ||||||||||||||||||||| |||| Sbjct: 38954 ccgccgacgacgccgacgacgaggac 38929
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 346 ccgccgacgacgccgacgacggggac 371 ||||||||||||||||||||| |||| Sbjct: 122601 ccgccgacgacgccgacgacgaggac 122576
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ccgccgacgacgccgacgacggggac 371 ||||||||||||||||||||| |||| Sbjct: 18956087 ccgccgacgacgccgacgacgaggac 18956112
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 338 gcccaagcccgccgacgacgccgacg 363 ||||||||||||||||| |||||||| Sbjct: 8157056 gcccaagcccgccgacgccgccgacg 8157081 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 1826445 cgccgacgacgccgacgacg 1826426 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 1826436 cgccgacgacgccgacgacg 1826417
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ccgccgacgacgccgacgacggggac 371 ||||||||||||||||||||| |||| Sbjct: 18967317 ccgccgacgacgccgacgacgaggac 18967342
>ref|XM_475190.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1158 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 350 cgacgacgccgacgacggggaccacctcccgcc 382 ||||||||||| ||||||| || |||||||||| Sbjct: 60 cgacgacgccggcgacgggaacgacctcccgcc 28
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 350 cgacgacgccgacgacggggaccacctcccgcc 382 ||||||||||| ||||||| || |||||||||| Sbjct: 18798470 cgacgacgccggcgacgggaacgacctcccgcc 18798502 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gccgacgacgccgacgacgg 367 |||||||||||||||||||| Sbjct: 2422083 gccgacgacgccgacgacgg 2422064
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 cccgccgacgacgccgacgac 365 ||||||||||||||||||||| Sbjct: 15826220 cccgccgacgacgccgacgac 15826200 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cctcctccgccgccgctggc 339 |||||||||||||||||||| Sbjct: 30366096 cctcctccgccgccgctggc 30366115 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 cccgccgacgacgccgacgacggg 368 ||||||||||||| |||||||||| Sbjct: 21582523 cccgccgacgacggcgacgacggg 21582546
>gb|AF123610.1|AF123610 Triticum aestivum clone RED1-TA NADPH-cytochrome P450 reductase mRNA, partial cds Length = 2333 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacgg 367 ||||||||||||||||||||| Sbjct: 106 cgccgacgacgccgacgacgg 126
>gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF genes, qcrABC genes, ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene, ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and ypoC gene, complete cds Length = 23775 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 ctccgtccatttcaagaacct 322 ||||||||||||||||||||| Sbjct: 1563 ctccgtccatttcaagaacct 1543
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 cccgccgacgacgccgacgac 365 ||||||||||||||||||||| Sbjct: 84160 cccgccgacgacgccgacgac 84140
>dbj|AK063704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G12, full insert sequence Length = 665 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 cccgccgacgacgccgacgac 365 ||||||||||||||||||||| Sbjct: 233 cccgccgacgacgccgacgac 253
>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to 2409180 Length = 201375 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 ctccgtccatttcaagaacct 322 ||||||||||||||||||||| Sbjct: 157794 ctccgtccatttcaagaacct 157814
>gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_G07, complete sequence Length = 71145 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 350 cgacgacgccgacgacggggaccacctcccgcc 382 ||||||||||| ||||||| || |||||||||| Sbjct: 20836 cgacgacgccggcgacgggaacgacctcccgcc 20868
>ref|XM_482765.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1848 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 312 cgccgacgacgccgacgacg 293
>ref|XM_480321.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ccgccgacgacgccgacgacgggg 369 |||||||||||||||||| ||||| Sbjct: 341 ccgccgacgacgccgacgccgggg 364
>ref|XM_475598.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 231 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gccgacgacgccgacgacgg 367 |||||||||||||||||||| Sbjct: 48 gccgacgacgccgacgacgg 67
>ref|XM_467596.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1248 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cctcctccgccgccgctggc 339 |||||||||||||||||||| Sbjct: 191 cctcctccgccgccgctggc 172
>ref|XM_466302.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cccgccgacgacgccgacgacggg 368 ||||||||||||| |||||||||| Sbjct: 135 cccgccgacgacggcgacgacggg 112
>gb|BT017810.1| Zea mays clone EL01N0507A04.c mRNA sequence Length = 1011 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ggaggtgccgccggagatgc 135 |||||||||||||||||||| Sbjct: 239 ggaggtgccgccggagatgc 258
>gb|AY725781.1| Oncometopia nigricans putative rhodopsin mRNA, complete cds Length = 1146 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aggtgccgccggagatgctc 137 |||||||||||||||||||| Sbjct: 83 aggtgccgccggagatgctc 102
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 1769437 cgccgacgacgccgacgacg 1769456
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 482585 cgccgacgacgccgacgacg 482566
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04, complete sequence Length = 133271 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gccgacgacgccgacgacgg 367 |||||||||||||||||||| Sbjct: 97683 gccgacgacgccgacgacgg 97664
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 3014919 cgccgacgacgccgacgacg 3014938
>emb|AJ296704.1|PAB296704 Picea abies ATC microsatellite DNA, clone EATC1F07B Length = 317 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 193 cgccgacgacgccgacgacg 174
>gb|DQ110879.1| Amycolatopsis lurida strain NRRL 2430 glycopeptide monooxygenase B (oxyB) gene, partial cds Length = 574 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gtcgccccggatcgcggcga 111 |||||||||||||||||||| Sbjct: 538 gtcgccccggatcgcggcga 519
>emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on chromosome X Contains the DXYS155E gene for DNA segment on chromosome X and Y (unique) 155 expressed sequence (XE7, XE7Y), the ASMT gene for acetylserotonin O-methyltransferase (ASMTY, HIOMT, HIOMTY), three novel genes and three CpG islands, complete sequence Length = 189825 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 9198 ccgccgccgctggcccaagc 9179
>ref|XM_775656.1| PREDICTED: Strongylocentrotus purpuratus similar to sporulation-induced transcript 4-associated protein (LOC575241), mRNA Length = 4368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 3840 cgccgacgacgccgacgacg 3859 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 3831 cgccgacgacgccgacgacg 3850
>ref|XM_775775.1| PREDICTED: Strongylocentrotus purpuratus similar to CG14853-PB, isoform B (LOC575371), partial mRNA Length = 1779 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 1692 cgccgacgacgccgacgacg 1711
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 acgacgccgacgacggggac 371 |||||||||||||||||||| Sbjct: 565961 acgacgccgacgacggggac 565980
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 2744891 cgccgacgacgccgacgacg 2744910
>gb|DQ442996.1| Triticum aestivum phosphomannomutase mRNA, complete cds Length = 750 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ggaggtgccgccggagatgctcga 139 ||||||| |||||||||||||||| Sbjct: 75 ggaggtgacgccggagatgctcga 98
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome Length = 156789 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 agcccgccgacgacgccgacgacgggga 370 |||||| |||||||| |||||||||||| Sbjct: 151219 agcccgacgacgacgacgacgacgggga 151246 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 agcccgccgacgacgccgacgacgggga 370 |||||| |||||||| |||||||||||| Sbjct: 131205 agcccgacgacgacgacgacgacgggga 131178
>gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosome 8, complete sequence Length = 201039 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cccttcccctcttctccacg 20 |||||||||||||||||||| Sbjct: 98543 cccttcccctcttctccacg 98562
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 38573 cgccgacgacgccgacgacg 38592
>gb|AY082963.1| Hordeum vulgare clone HV_CEb0009E08f CONSTANS-like protein CO7 (CO7) mRNA, partial cds Length = 1056 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 ccaagcccgccgacgacgccgacg 363 |||||| ||||||||||||||||| Sbjct: 627 ccaagcgcgccgacgacgccgacg 650
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 22411066 cgccgacgacgccgacgacg 22411085 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ccgccgacgacgccgacgacgggg 369 |||||||||||||||||| ||||| Sbjct: 4311861 ccgccgacgacgccgacgccgggg 4311838
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 cccgccgacgacgccgacgacggg 368 ||||||||||||| |||||||||| Sbjct: 71473 cccgccgacgacggcgacgacggg 71496
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03 Length = 183623 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ccgccgacgacgccgacgacgggg 369 |||||||||||||||||| ||||| Sbjct: 74655 ccgccgacgacgccgacgccgggg 74632
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cctcctccgccgccgctggc 339 |||||||||||||||||||| Sbjct: 46956 cctcctccgccgccgctggc 46975
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1144B06 Length = 133689 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 108049 cgccgacgacgccgacgacg 108068
>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0493A04 Length = 149367 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 5994 cgccgacgacgccgacgacg 6013
>dbj|AK106955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E08, full insert sequence Length = 1848 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 312 cgccgacgacgccgacgacg 293
>ref|NM_207722.1| Eremothecium gossypii AAL173Cp (AAL173C), mRNA Length = 1263 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 955 cgccgacgacgccgacgacg 936
>dbj|AK068282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142A16, full insert sequence Length = 750 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cccgccgacgacgccgacgacggg 368 ||||||||||||| |||||||||| Sbjct: 135 cccgccgacgacggcgacgacggg 112
>dbj|AK064113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H08, full insert sequence Length = 449 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gccgacgacgccgacgacgg 367 |||||||||||||||||||| Sbjct: 158 gccgacgacgccgacgacgg 177
>gb|BC110496.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155 expressed sequence, isoform 1, mRNA (cDNA clone MGC:125365 IMAGE:40007662), complete cds Length = 2402 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 144 ccgccgccgctggcccaagc 125
>gb|BC110497.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155 expressed sequence, isoform 1, mRNA (cDNA clone MGC:125366 IMAGE:40007663), complete cds Length = 2402 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 144 ccgccgccgctggcccaagc 125
>gb|BC093401.1| Rattus norvegicus cathepsin W, mRNA (cDNA clone MGC:112764 IMAGE:7389584), complete cds Length = 1272 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acctcgccgctccaccccct 61 |||||||||||||||||||| Sbjct: 947 acctcgccgctccaccccct 966
>gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone rp23-422n18, complete sequence Length = 188880 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 aacctcctccgccgccgctg 337 |||||||||||||||||||| Sbjct: 78410 aacctcctccgccgccgctg 78429
>gb|BC028151.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155 expressed sequence, isoform 1, mRNA (cDNA clone MGC:39904 IMAGE:5217247), complete cds Length = 2187 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 114 ccgccgccgctggcccaagc 95
>gb|BC016935.1| Homo sapiens DNA segment on chromosome X and Y (unique) 155 expressed sequence, isoform 1, mRNA (cDNA clone IMAGE:4430810), containing frame-shift errors Length = 1073 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 146 ccgccgccgctggcccaagc 127
>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence Length = 221852 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cccttcccctcttctccacg 20 |||||||||||||||||||| Sbjct: 196548 cccttcccctcttctccacg 196567
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgccgacgacgccgacgacg 366 |||||||||||||||||||| Sbjct: 3895743 cgccgacgacgccgacgacg 3895724
>ref|NM_001024242.1| Rattus norvegicus cathepsin W (Ctsw), mRNA Length = 1272 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acctcgccgctccaccccct 61 |||||||||||||||||||| Sbjct: 947 acctcgccgctccaccccct 966
>ref|NM_005088.2| Homo sapiens DNA segment on chromosome X and Y (unique) 155 expressed sequence, isoform 1 (DXYS155E), mRNA Length = 3227 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 146 ccgccgccgctggcccaagc 127
>gb|BC015800.1| Homo sapiens cDNA clone IMAGE:3915791, containing frame-shift errors Length = 3127 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 58 ccgccgccgctggcccaagc 39
>gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 map 8, complete sequence Length = 202175 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cccttcccctcttctccacg 20 |||||||||||||||||||| Sbjct: 98783 cccttcccctcttctccacg 98802
>gb|L03426.1|HUMXE7A Human XE7 mRNA, complete alternate coding regions Length = 3233 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 116 ccgccgccgctggcccaagc 97
>gb|M99578.1|HUMLSPRO Human lymphocyte surface protein exons 1-5, complete cds Length = 2622 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccgccgccgctggcccaagc 345 |||||||||||||||||||| Sbjct: 119 ccgccgccgctggcccaagc 100
>dbj|AP005229.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-128P17, complete sequence Length = 129326 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 tcctccagctcctgctcacc 431 |||||||||||||||||||| Sbjct: 79856 tcctccagctcctgctcacc 79875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,750,030 Number of Sequences: 3902068 Number of extensions: 2750030 Number of successful extensions: 75339 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73380 Number of HSP's gapped (non-prelim): 1959 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)