>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
 Frame = +2

Query: 206 PDRPRAGAAA----------GFEDSPVFD------FINNLSPIPPPKP 301
           PDRP AGA            GF+DSP  D      + + +S +PPP+P
Sbjct: 420 PDRPSAGAPPPPPPSTSIRNGFQDSPCEDEWESRFYFHPISDLPPPEP 467

>MSH5_CAEEL (Q19272) MutS protein homolog 5|
          Length = 1369

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 299  PQDSSHNVHLFKSSDLAPVSSIFASPHVNPPKESKILIRDDSVQLSQDSNSPIVS 463
            P++ S N  L +S+   P  +I +S  VNP   +     DDS+  SQD+  P V+
Sbjct: 1110 PKNRSMNQSLIQSARDTPHETIRSSNEVNPEFFNIFNFPDDSILKSQDTYDPNVT 1164

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
            chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 263  FINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPPKES 400
            F  +L P PP  P++    VHL +  ++ PV      P + PP++S
Sbjct: 1161 FSTSLRPEPPKHPENIKAPVHLPQRPEMKPVD--IGRPVIRPPEQS 1204

>YLO4_SCHPO (Q8J1M8) Hypothetical protein C1952.04c in chromosome II|
          Length = 158

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 245 DSPVFDFINNLSPIPPPKPQDSSHNVHLF---KSSDLAPVSSIFASPHVNPPKES 400
           DS + D       +P P+  ++S   H F    SS    + ++   PH+ PP++S
Sbjct: 59  DSAMIDQRRRREDLPTPERPEASAQQHAFFPGSSSQQTDIPNVRPQPHIPPPRKS 113

>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3)
          Length = 583

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 242 EDSPVFDFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPP 391
           ED+PV      LSP PP KP  SS       SSD+   S+  +S    PP
Sbjct: 317 EDTPVEQAA--LSPFPPSKPPVSSELGDSSCSSDMTDSSTTLSSGSSEPP 364

>TEAD2_MOUSE (P48301) Transcriptional enhancer factor TEF-4 (TEA domain family|
           member 2) (TEAD-2) (Embryonic TEA domain-containing
           factor) (ETF) (ETEF-1)
          Length = 445

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 24/80 (30%), Positives = 31/80 (38%)
 Frame = +2

Query: 215 PRAGAAAGFEDSPVFDFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPPK 394
           P A    G+E  P       LSP+PPP P   +      ++   A +  I  S  V PP 
Sbjct: 191 PPASDLPGYEPPPA------LSPLPPPAPSPPAWQA---RALGTARLQLIEFSAFVEPPD 241

Query: 395 ESKILIRDDSVQLSQDSNSP 454
                 R   V +SQ   SP
Sbjct: 242 AVDSFQRHLFVHISQQCPSP 261

>FA20A_HUMAN (Q96MK3) Protein FAM20A precursor|
          Length = 541

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 218 RAGAAAGFEDSPVFDFINNLSPIPP-PKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPPK 394
           R  AAA  +   +   ++N S   P  +P   SH      S   + + ++FA P  N P+
Sbjct: 55  RDSAAAASDPGTI---VHNFSRTEPRTEPAGGSH------SGSSSKLQALFAHPLYNVPE 105

Query: 395 ESKILIRDDSVQLSQDS 445
           E  +L  +DS+  SQ++
Sbjct: 106 EPPLLGAEDSLLASQEA 122

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = +2

Query: 167  PQPXXXXXXAMDTPDRPRAGAAAGFEDS--PVFDFINNLSPIPPPKPQDSSHNVHLFKSS 340
            P P       + TP  P  G +    +S  PV + +  LS +P P   + +       + 
Sbjct: 1888 PSPVDPYAKMVGTPRPPPGGHSFPRRNSVTPVENCVP-LSSVPRPIHMNETSATRPSPAR 1946

Query: 341  DLAPVSSIFASPHVNPPKESKILIRDDSVQLSQDSNSPIVSE 466
            DL   S   + P+  PP   + ++ D   +      SP++SE
Sbjct: 1947 DLCASSMTNSDPYAKPPDTPRPMMTDQFSKPFSLPRSPVISE 1988

>Y779_METJA (Q58189) Hypothetical protein MJ0779|
          Length = 299

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 215 PRAGAAAGFEDSPVFDFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASP 376
           P   A  G     V   ++ ++PIPP KP+D S    + +    A + ++FA P
Sbjct: 211 PAVAALLGAYLIAVSGMLSGVAPIPPVKPEDISKGFEIVQMG-TAIIGALFAIP 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,736,947
Number of Sequences: 219361
Number of extensions: 638024
Number of successful extensions: 2252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2248
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)