ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26d03 |
|---|---|
| Clone Library Name | barley_pub |
>FOXJ1_MOUSE (Q61660) Forkhead box protein J1 (Forkhead-related protein FKHL13)| (Hepatocyte nuclear factor 3 forkhead homolog 4) (HFH-4) Length = 421 Score = 32.3 bits (72), Expect = 0.66 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +2 Query: 26 HEHHTAMASQKPEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRG 175 H ASQ+P A +P+G L R +++ ++ E+A G WGTG G Sbjct: 221 HPAFARQASQEPSA--APWGGPLTVNREAQQLLQEFEEATGEGGWGTGEG 268
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 32.0 bits (71), Expect = 0.87 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Frame = +1 Query: 370 NPCL---WRGIGCSPSNSSSFLVVTKVDLS 450 +PC+ W+G+ C SN SS V+TK+DLS Sbjct: 386 DPCMLFPWKGVACDGSNGSS--VITKLDLS 413
>SYV_METBF (Q46B32) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 869 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = -3 Query: 245 QNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRPFLLIQLAPC*PWPAG 93 ++++ KE + S E+ W+++ + ++ DPRP +I P P+P G Sbjct: 3 ESEIPKEYNASEVEEKWMDKWDLSMYHFNWGEDPRPQYIIDTPP--PYPTG 51
>RAG2_ONCMY (Q91193) V(D)J recombination-activating protein 2 (RAG-2)| Length = 533 Score = 31.2 bits (69), Expect = 1.5 Identities = 20/51 (39%), Positives = 26/51 (50%) Frame = -3 Query: 422 KELELEGEQPIPLHRHGLETVVFHPAEPTERERSLMMDSCVLFRGRGGLPA 270 +E EL GEQP P + H L V +SL +CV+F GR +PA Sbjct: 125 QERELVGEQPGPRYGHTLSMV-----------QSLGKRACVVFGGRSYMPA 164
>SYV_METAC (Q8TLI4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 869 Score = 30.8 bits (68), Expect = 1.9 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = -3 Query: 245 QNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRPFLLIQLAPC*PWPAG 93 ++++ KE + + E+ W+E+ ++ DPRP +I P P+P G Sbjct: 3 ESEIPKEYNANEVEEKWMEKWNLSMYHFNWGEDPRPQYIIDTPP--PYPTG 51
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 352 WNTTVSNPCLWRGIGCSPSNSSSFLVVTKVDL 447 W+ T+ PC W + C+ NS VT+VDL Sbjct: 49 WDATLVTPCTWFHVTCNSDNS-----VTRVDL 75
>GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)| Length = 1317 Score = 30.0 bits (66), Expect = 3.3 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = -3 Query: 254 RWRQNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRPFLLIQLAPC 111 +W+++K K+ SG G+ Q+Q AG P+P L +++A C Sbjct: 623 KWKKSKAAKQGSGGGSSGSSSGSQQQ-----GAAGAPQPVLGVRIADC 665
>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium| channel protein type VII alpha subunit) (Putative voltage-gated sodium channel alpha subunit Nax) (Sodium channel protein, cardiac and skeletal muscle alpha-subunit) Length = 1682 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 245 QNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRP 138 Q+ +K ++ SGTEK E + Q L PSP + P Sbjct: 802 QDFLKDKEKSSGTEKNATENESQSLIPSPSVSETVP 837
>FOXJ1_RAT (Q63247) Forkhead box protein J1 (Hepatocyte nuclear factor 3| forkhead homolog 4) (HFH-4) Length = 421 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = +2 Query: 26 HEHHTAMASQKPEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTV----PAPL 193 H A+Q+P +P+G L R +++ ++ E+A G WGTG G + PL Sbjct: 221 HPAFARQAAQEPST--APWGGPLTVNREAQQLLQEFEEATGEGGWGTGEGRLGHKRKQPL 278 Query: 194 P 196 P Sbjct: 279 P 279
>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid| salivary glycoprotein G1) (Proline-rich protein G1) Length = 309 Score = 26.6 bits (57), Expect(2) = 3.6 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 12 PKPEGTSTTQPWPPRNPKPRGVP 80 P P+G + +Q PPR KP G P Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPP 166 Score = 26.6 bits (57), Expect(2) = 3.6 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 12 PKPEGTSTTQPWPPRNPKPRGVP 80 P P+G + +Q PPR KP G P Sbjct: 60 PPPQGGNQSQGPPPRPGKPEGQP 82 Score = 25.0 bits (53), Expect(2) = 9.6 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 12 PKPEGTSTTQPWPPRNPKPRGVP 80 P P+G + +Q PPR +P G P Sbjct: 102 PPPQGGNQSQGPPPRPGEPEGPP 124 Score = 21.9 bits (45), Expect(2) = 3.6 Identities = 15/46 (32%), Positives = 17/46 (36%) Frame = +2 Query: 59 PEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTVPAPLP 196 P G P G Q S+ P K EG P G + P P P Sbjct: 177 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRP 222 Score = 21.9 bits (45), Expect(2) = 9.6 Identities = 15/46 (32%), Positives = 17/46 (36%) Frame = +2 Query: 59 PEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTVPAPLP 196 P G P G Q S+ P K EG P G + P P P Sbjct: 156 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRP 201 Score = 21.9 bits (45), Expect(2) = 3.6 Identities = 15/46 (32%), Positives = 17/46 (36%) Frame = +2 Query: 59 PEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTVPAPLP 196 P G P G Q S+ P K EG P G + P P P Sbjct: 114 PPRPGEPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRP 159
>VILI_MOUSE (Q62468) Villin-1| Length = 826 Score = 29.6 bits (65), Expect = 4.3 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = -3 Query: 344 EPTERERSLMMDSCVLFRGRGGLPAA-AAMDRWRQNKVKKEK 222 +P+ +E L + R G PAA +A+ RW+Q +KKEK Sbjct: 784 DPSRKEEHLSTEDFT--RALGMTPAAFSALPRWKQQNIKKEK 823
>RPK1_IPONI (P93194) Receptor-like protein kinase precursor (EC 2.7.11.1)| Length = 1109 Score = 29.6 bits (65), Expect = 4.3 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 310 SIMRDLSRSVGSAGWNTTVSNPCLWRGIGCSPSNSSSFLVVTKVDLSG 453 SI D+++S WN + S PC W G+ C L ++ +SG Sbjct: 40 SIPSDITQS-----WNASDSTPCSWLGVECDRRQFVDTLNLSSYGISG 82
>VILI_HUMAN (P09327) Villin-1| Length = 826 Score = 29.3 bits (64), Expect = 5.6 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Frame = -3 Query: 389 PLHRHGLETVVFHPAE-------PTERERSLMMDSCVLFRGRGGLPAA-AAMDRWRQNKV 234 PL LE +V P E P+ +E L ++ + G PAA +A+ RW+Q + Sbjct: 762 PLPIFPLEQLVNKPVEELPEGVDPSRKEEHLSIEDFT--QAFGMTPAAFSALPRWKQQNL 819 Query: 233 KKEK 222 KKEK Sbjct: 820 KKEK 823
>R4RL1_HUMAN (Q86UN2) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor| homolog 2) (Nogo-66 receptor-related protein 3) (NgR3) (Nogo receptor-like 2) Length = 441 Score = 29.3 bits (64), Expect = 5.6 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 65 LRVSGRPWLCGARALGFW 12 LR++G PW CG RA W Sbjct: 250 LRLNGNPWDCGCRARSLW 267
>MMP9_HUMAN (P14780) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) [Contains: 67 kDa matrix metalloproteinase-9; 82 kDa matrix metalloproteinase-9] Length = 707 Score = 29.3 bits (64), Expect = 5.6 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = +3 Query: 12 PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRP--GSAGSQLNQEKRPRVAG 155 P+P T+T QP P P G P + S RP G G P AG Sbjct: 451 PRPPTTTTPQPTAPPTVCPTGPPTVHPSERPTAGPTGPPSAGPTGPPTAG 500
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +3 Query: 3 KCRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAG 155 K +PKP T P PP+ PKP+ P + P Q K P G Sbjct: 11 KPQPKPPPAPTPSPCPPQPPKPQPKPPPAPTPSPCPPQPPKPQPKPPPAPG 61 Score = 28.9 bits (63), Expect = 7.3 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = +3 Query: 3 KCRPKPEGTSTTQPWPPRNPK--PRGVPLAYCSSRPGSAGS 119 K +PKP T P PP+ PK P+ P S +PG + S Sbjct: 31 KPQPKPPPAPTPSPCPPQPPKPQPKPPPAPGPSPKPGPSPS 71
>RIMM_BURPS (Q63S31) Probable 16S rRNA-processing protein rimM| Length = 211 Score = 29.3 bits (64), Expect = 5.6 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 377 HGLETVVFHPAEPTERERSLMMDSCVLFRGRGGLPAAAA 261 HG +TVV HP +R+ +L + +F RG PA AA Sbjct: 93 HG-DTVVAHPDGSVDRDTALALRGARVFVRRGDFPALAA 130
>RIMM_BURMA (Q62M51) Probable 16S rRNA-processing protein rimM| Length = 211 Score = 29.3 bits (64), Expect = 5.6 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 377 HGLETVVFHPAEPTERERSLMMDSCVLFRGRGGLPAAAA 261 HG +TVV HP +R+ +L + +F RG PA AA Sbjct: 93 HG-DTVVAHPDGSVDRDTALALRGARVFVRRGDFPALAA 130
>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)| Length = 279 Score = 28.9 bits (63), Expect = 7.3 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = +3 Query: 12 PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGS--QLNQEKRPRVAG 155 P P T P PP +P P G P+ + P S G+ QL RP G Sbjct: 173 PTPSPTPPPSPTPPPSPSPLGDPMYF----PSSVGTTDQLRDYIRPLCNG 218
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 28.9 bits (63), Expect = 7.3 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Frame = +3 Query: 15 KPEGTSTTQPWPPRNPKPR--GVPLAYCSSRP--GSAGSQLNQE---KRPRVAGHGGR 167 +P G +T PPR+P+PR G P + RP G A +++ +RPR GR Sbjct: 99 RPHGNTTASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDCRCRRPRRWPRAGR 156
>SYL_PYRKO (Q8NKR7) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 967 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +2 Query: 323 ISRALWAQPGGTQPSPIHAYGGESVAPLLTPVPSWW 430 IS LW + GG G S+AP PVP WW Sbjct: 801 ISEELWEKLGGE--------GFVSLAPWPEPVPEWW 828
>QOR_SALTY (P40783) Quinone oxidoreductase (EC 1.6.5.5) (NADPH:quinone| reductase) (Zeta-crystallin homolog protein) Length = 327 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 4/26 (15%) Frame = -3 Query: 392 IPLHRHG----LETVVFHPAEPTERE 327 I H+HG L+TV F PAEP E E Sbjct: 5 IEFHKHGGPEVLQTVEFTPAEPAEHE 30
>VGLC_HHV1K (P28986) Glycoprotein C precursor| Length = 511 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/55 (27%), Positives = 25/55 (45%) Frame = +3 Query: 12 PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAGHGGREEV 176 PKP T + P +PKP+ S RP + ++R +A +G R ++ Sbjct: 88 PKPTSTPKSPPTSTPDPKPKNNTTPAKSGRPTKPPGPVWCDRRDPLARYGSRVQI 142
>VGLC_HHV11 (P10228) Glycoprotein C precursor| Length = 511 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/55 (27%), Positives = 25/55 (45%) Frame = +3 Query: 12 PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAGHGGREEV 176 PKP T + P +PKP+ S RP + ++R +A +G R ++ Sbjct: 88 PKPTSTPKSPPTSTPDPKPKNNTTPAKSGRPTKPPGPVWCDRRDPLARYGSRVQI 142
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 28.5 bits (62), Expect = 9.6 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 11/87 (12%) Frame = +1 Query: 238 LFCLHLSIXXXXXXXXXXXXXTQESIMR-------DLSRSVGSAGWNTTVSNPCLWRGIG 396 L+CL L + +I+R D ++S+ S N V+ PC W G+ Sbjct: 2 LYCLILLLCLSSTYLPSLSLNQDATILRQAKLGLSDPAQSLSSWSDNNDVT-PCKWLGVS 60 Query: 397 CSPSNSSSFLVVTKVDLSGY----PYP 465 C +++ V VDLS + P+P Sbjct: 61 CDATSN-----VVSVDLSSFMLVGPFP 82
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = +3 Query: 18 PEGTSTTQPWPPRNPKPRGVPLAYCSSRP 104 PEG S P PP P P G P Y +SRP Sbjct: 1400 PEGPSEALPPPP--PAPPGPPEIYYTSRP 1426
>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1021 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Frame = +1 Query: 307 ESIMRDLSRSVGSAGWNTTVS---NPCLWRGIGCSPSNS 414 E MR L S+ WN + S N C W GI C S S Sbjct: 38 EGFMRGLESSIDGWKWNESSSFSSNCCDWVGISCKSSVS 76
>BDF1_YEAST (P35817) Protein BDF1| Length = 686 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -3 Query: 290 GRGGLPAAAAMDRWRQNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRP 138 G G A + Q +KKE+ G GT++ ++E + P + +P P Sbjct: 83 GENGYNATGSGAEDEQQGLKKEEGGQGTKQEDLDENSKQELPMEVPKEPAP 133
>FLGH_BURPS (Q63YB2) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 240 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = +3 Query: 6 CRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAG 155 C P T QP P P + PG AG L +++RPR G Sbjct: 37 CAQIPREPITQQPMSAMPPMPPAMQAPGSIYNPGYAGRPLFEDQRPRNVG 86
>FLGH_BURMA (Q62ES7) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 222 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = +3 Query: 6 CRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAG 155 C P T QP P P + PG AG L +++RPR G Sbjct: 19 CAQIPREPITQQPMSAMPPMPPAMQAPGSIYNPGYAGRPLFEDQRPRNVG 68
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = +3 Query: 18 PEGTSTTQPWPPRNPKPRGVPLAYCSSRP 104 PEG S P PP P P G P Y +SRP Sbjct: 1402 PEGPSEALPPPP--PAPPGPPEIYYTSRP 1428
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = +3 Query: 3 KCRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPG 107 K RP P GT Q P P+PR P C S G Sbjct: 303 KKRPPPSGTQIHQQKGPPLPRPRVQPKPPCGSGDG 337
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 28.5 bits (62), Expect = 9.6 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +3 Query: 9 RPKPEGTSTTQPWPPRNPKPRGVP--LAYCSSRPGSAGSQ-LNQEKRPRVAGH 158 RP PEG + P +P+P G P A S RPG+ Q + +PR AG+ Sbjct: 260 RPDPEGQRPDKKRPGISPRPIGGPNQRANTSQRPGAPIRQGKTRPGQPRSAGN 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,503,001 Number of Sequences: 219361 Number of extensions: 1715166 Number of successful extensions: 6456 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6365 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
