Clone Information

BLAST Search Result

Clone Name	bastl26c11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK070398.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	434	e-118
2	gb\|AC145477.2\| Oryza sativa (japonica cultivar-group) chromosome...	143	6e-31
3	gb\|AC145396.3\| Oryza sativa (japonica cultivar-group) chromosome...	143	6e-31
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	143	6e-31
5	gb\|AC182012.3\| Otolemur garnettii clone CH256-376P14, complete s...	48	0.026
6	ref\|XM_658104.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	44	0.41
7	emb\|AL163282.2\|HS21C082 Homo sapiens chromosome 21 segment HS21C082	44	0.41
8	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
9	dbj\|AP005789.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
10	dbj\|AP005569.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
11	gb\|AF064863.3\| Homo sapiens chromosome 21 clone RP1-111A18 map 2...	44	0.41
12	gb\|BT016136.1\| Drosophila melanogaster GH01148 full insert cDNA	42	1.6
13	gb\|AC093195.2\| Drosophila melanogaster clone BACR16J09, complete...	42	1.6
14	gb\|AC008328.6\| Drosophila melanogaster clone BACR09A04, complete...	42	1.6
15	gb\|AC135361.3\| Mus musculus BAC clone RP23-216A21 from chromosom...	42	1.6
16	gb\|AC116572.3\| Mus musculus BAC clone RP23-101D16 from 14, compl...	42	1.6
17	emb\|AL390879.20\| Human DNA sequence from clone RP11-308D16 on ch...	42	1.6
18	emb\|AL160060.11\| Human DNA sequence from clone RP11-207K8 on chr...	42	1.6
19	gb\|AC002391.3\| Arabidopsis thaliana chromosome 2 clone T20D16 ma...	42	1.6
20	ref\|NM_135309.1\| Drosophila melanogaster CG7134-RA (CG7134), mRNA	42	1.6
21	gb\|AC008329.3\|AC008329 Drosophila melanogaster, chromosome 2L, r...	42	1.6
22	gb\|AC154856.2\| Mus musculus BAC clone RP23-20C2 from 13, complet...	42	1.6
23	emb\|CR352256.11\| Zebrafish DNA sequence from clone CH211-218G23 ...	42	1.6
24	gb\|AE003618.3\| Drosophila melanogaster chromosome 2L, section 27...	42	1.6
25	gb\|AC004722.1\|AC004722 Drosophila melanogaster DNA sequence (P1 ...	42	1.6
26	gb\|AC166056.2\| Mus musculus BAC clone RP23-462A15 from chromosom...	40	6.4
27	ref\|NM_054080.1\| Mus musculus aldo-keto reductase family 1, memb...	40	6.4
28	gb\|BT018654.1\| Zea mays clone EL01N0506H01.d mRNA sequence	40	6.4
29	gb\|AC164613.3\| Mus musculus BAC clone RP23-324B8 from chromosome...	40	6.4
30	gb\|AC146155.3\| Pan troglodytes BAC clone RP43-37F3 from 7, compl...	40	6.4
31	emb\|CR854834.11\| Zebrafish DNA sequence from clone DKEYP-92B10 i...	40	6.4
32	gb\|AC005251.1\| Homo sapiens BAC clone CTA-324D18 from 7, complet...	40	6.4
33	gb\|AC018525.8\| Homo sapiens chromosome 8, clone RP11-3J13, compl...	40	6.4
34	gb\|AC103853.2\| Homo sapiens chromosome 8, clone RP11-642D21, com...	40	6.4
35	dbj\|AP007169.1\| Aspergillus oryzae RIB40 genomic DNA, SC038	40	6.4
36	gb\|AC095353.9\| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Can...	40	6.4
37	dbj\|AK012162.1\| Mus musculus 10 days embryo whole body cDNA, RIK...	40	6.4
38	dbj\|BA000004.3\| Bacillus halodurans C-125 DNA, complete genome	40	6.4
39	emb\|BX004779.16\| Zebrafish DNA sequence from clone CH211-14K19 i...	40	6.4
40	gb\|AY107581.1\| Zea mays PCO087321 mRNA sequence	40	6.4
41	dbj\|AP005354.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	6.4
42	emb\|CR382128.1\| Yarrowia lipolytica chromosome B of strain CLIB1...	40	6.4
43	emb\|AL672056.4\| Mouse DNA sequence from clone RP23-467O2 on chro...	40	6.4

>dbj|AK070398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048G06, full
           insert sequence
          Length = 3440

 Score =  434 bits (219), Expect = e-118
 Identities = 399/459 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagttaagcaggcagtttaccacactcagaagagtgggaggaggcgtgttgtggtcttga 63
           |||| ||||||||||| ||||||| |||||| ||||| ||||| ||||||||||| ||||
Sbjct: 235 aagtaaagcaggcagtctaccacagtcagaaaagtggaaggagacgtgttgtggtgttga 294

                                                                       
Query: 64  cagaggaaaatgtgatcgcttctcttgatcttcgttcaggagatatattttggcgacatg 123
           ||||||||||||| || |||||||||||||||||||||||||||||||||||| | || |
Sbjct: 295 cagaggaaaatgttattgcttctcttgatcttcgttcaggagatatattttggaggcacg 354

                                                                       
Query: 124 tcattgagaagaataaccccattgatcagcttagtctatcagctggaaaatatgttgtta 183
           |||||||||||||| | ||  | ||| |||||||| |||||  ||||||||||||||| |
Sbjct: 355 tcattgagaagaatgatcctgtggatgagcttagtttatcacttggaaaatatgttgtaa 414

                                                                       
Query: 184 ccctttcttcgggaggtagtatattgagggcatggaatcttcctgatggacagatggtct 243
           | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 415 ctctttcttcgggaggtagtatattgagggcatggaatcttcctgatggccagatgatct 474

                                                                       
Query: 244 gggaaaccaatattcaaacttcctcagcatcaaagtcgttgctgcatgttttgtcaaaca 303
           ||||||| ||| |||||  ||||  | |||||||  |  | |||||||||||||||||||
Sbjct: 475 gggaaactaatcttcaagtttccaaatcatcaaaacctcttctgcatgttttgtcaaaca 534

                                                                       
Query: 304 gtaaagtggtacaagataatttggttttagttttggctggacaatggatttatgctatat 363
             ||||| | | | |||||| ||||||| || |||||||||| ||||||||||||  |||
Sbjct: 535 acaaagtagcaaaggataatctggtttttgtgttggctggacgatggatttatgccgtat 594

                                                                       
Query: 364 caagcattgatggactcatttcttggggaaaggagttcacacttgacggcctagaaatca 423
           |||||||||||||  | ||||||||||||||||||||| | ||||| ||||||||  |||
Sbjct: 595 caagcattgatggggtaatttcttggggaaaggagttctcccttgatggcctagatctca 654

                                                  
Query: 424 agcaggttgttcaatcacctgagaatgatattgtctatg 462
           ||||| || ||||||||||||||||||||||||| ||||
Sbjct: 655 agcagattattcaatcacctgagaatgatattgtatatg 693

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>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06,
              complete sequence
          Length = 134001

 Score =  143 bits (72), Expect = 6e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                          
Query: 4      aagttaagcaggcagtttaccacactcagaagagtgggaggaggcgtgttgtggtcttga 63
              |||| ||||||||||| ||||||| |||||| ||||| ||||| ||||||||||| ||||
Sbjct: 106618 aagtaaagcaggcagtctaccacagtcagaaaagtggaaggagacgtgttgtggtgttga 106677

                                                              
Query: 64     cagaggaaaatgtgatcgcttctcttgatcttcgttcaggagatatat 111
              ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 106678 cagaggaaaatgttattgcttctcttgatcttcgttcaggagatatat 106725



 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                          
Query: 175    atgttgttaccctttcttcgggaggtagtatattgagggcatggaatcttcctgatggac 234
              ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 107909 atgttgtaactctttcttcgggaggtagtatattgagggcatggaatcttcctgatggcc 107968

                                        
Query: 235    agatggtctgggaaaccaatattcaa 260
              ||||| |||||||||| ||| |||||
Sbjct: 107969 agatgatctgggaaactaatcttcaa 107994



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                          
Query: 318    gataatttggttttagttttggctggacaatggatttatgctatatcaagcattgatgga 377
              |||||| ||||||| || |||||||||| ||||||||||||  |||||||||||||||| 
Sbjct: 108164 gataatctggtttttgtgttggctggacgatggatttatgccgtatcaagcattgatggg 108223

                                      
Query: 378    ctcatttcttggggaaaggagttc 401
               | |||||||||||||||||||||
Sbjct: 108224 gtaatttcttggggaaaggagttc 108247



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                 
Query: 412    gcctagaaatcaagcaggttgttcaatcacctgagaatgatattgtctatg 462
              |||||||  |||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 108345 gcctagatctcaagcagattattcaatcacctgagaatgatattgtatatg 108395

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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score =  143 bits (72), Expect = 6e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                         
Query: 4     aagttaagcaggcagtttaccacactcagaagagtgggaggaggcgtgttgtggtcttga 63
             |||| ||||||||||| ||||||| |||||| ||||| ||||| ||||||||||| ||||
Sbjct: 13807 aagtaaagcaggcagtctaccacagtcagaaaagtggaaggagacgtgttgtggtgttga 13866

                                                             
Query: 64    cagaggaaaatgtgatcgcttctcttgatcttcgttcaggagatatat 111
             ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 13867 cagaggaaaatgttattgcttctcttgatcttcgttcaggagatatat 13914



 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                         
Query: 175   atgttgttaccctttcttcgggaggtagtatattgagggcatggaatcttcctgatggac 234
             ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15098 atgttgtaactctttcttcgggaggtagtatattgagggcatggaatcttcctgatggcc 15157

                                       
Query: 235   agatggtctgggaaaccaatattcaa 260
             ||||| |||||||||| ||| |||||
Sbjct: 15158 agatgatctgggaaactaatcttcaa 15183



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                         
Query: 318   gataatttggttttagttttggctggacaatggatttatgctatatcaagcattgatgga 377
             |||||| ||||||| || |||||||||| ||||||||||||  |||||||||||||||| 
Sbjct: 15353 gataatctggtttttgtgttggctggacgatggatttatgccgtatcaagcattgatggg 15412

                                     
Query: 378   ctcatttcttggggaaaggagttc 401
              | |||||||||||||||||||||
Sbjct: 15413 gtaatttcttggggaaaggagttc 15436



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 412   gcctagaaatcaagcaggttgttcaatcacctgagaatgatattgtctatg 462
             |||||||  |||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 15534 gcctagatctcaagcagattattcaatcacctgagaatgatattgtatatg 15584

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  143 bits (72), Expect = 6e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                           
Query: 4       aagttaagcaggcagtttaccacactcagaagagtgggaggaggcgtgttgtggtcttga 63
               |||| ||||||||||| ||||||| |||||| ||||| ||||| ||||||||||| ||||
Sbjct: 7829032 aagtaaagcaggcagtctaccacagtcagaaaagtggaaggagacgtgttgtggtgttga 7829091

                                                               
Query: 64      cagaggaaaatgtgatcgcttctcttgatcttcgttcaggagatatat 111
               ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 7829092 cagaggaaaatgttattgcttctcttgatcttcgttcaggagatatat 7829139



 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                           
Query: 175     atgttgttaccctttcttcgggaggtagtatattgagggcatggaatcttcctgatggac 234
               ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7830323 atgttgtaactctttcttcgggaggtagtatattgagggcatggaatcttcctgatggcc 7830382

                                         
Query: 235     agatggtctgggaaaccaatattcaa 260
               ||||| |||||||||| ||| |||||
Sbjct: 7830383 agatgatctgggaaactaatcttcaa 7830408



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                           
Query: 318     gataatttggttttagttttggctggacaatggatttatgctatatcaagcattgatgga 377
               |||||| ||||||| || |||||||||| ||||||||||||  |||||||||||||||| 
Sbjct: 7830578 gataatctggtttttgtgttggctggacgatggatttatgccgtatcaagcattgatggg 7830637

                                       
Query: 378     ctcatttcttggggaaaggagttc 401
                | |||||||||||||||||||||
Sbjct: 7830638 gtaatttcttggggaaaggagttc 7830661



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                  
Query: 412     gcctagaaatcaagcaggttgttcaatcacctgagaatgatattgtctatg 462
               |||||||  |||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 7830759 gcctagatctcaagcagattattcaatcacctgagaatgatattgtatatg 7830809

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>gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete sequence
          Length = 224337

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 238    tggtctgggaaaccaatattcaaacttcctca 269
              |||||||| ||||||||||| |||||||||||
Sbjct: 221438 tggtctggaaaaccaatattaaaacttcctca 221407

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>ref|XM_658104.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5592.2), mRNA
          Length = 2742

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 416 agaaatcaagcaggttgttcaa 437
           ||||||||||||||||||||||
Sbjct: 694 agaaatcaagcaggttgttcaa 673

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>emb|AL163282.2|HS21C082 Homo sapiens chromosome 21 segment HS21C082
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 323    tttggttttagttttggctgga 344
              ||||||||||||||||||||||
Sbjct: 329042 tttggttttagttttggctgga 329063

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 112     tttggcgacatgtcattgagaagaat 137
               ||||| ||||||||||||||||||||
Sbjct: 1215767 tttggtgacatgtcattgagaagaat 1215792

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>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0563F09
          Length = 174905

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 112   tttggcgacatgtcattgagaagaat 137
             ||||| ||||||||||||||||||||
Sbjct: 46641 tttggtgacatgtcattgagaagaat 46666

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>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1310_F05
          Length = 107916

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 112    tttggcgacatgtcattgagaagaat 137
              ||||| ||||||||||||||||||||
Sbjct: 104361 tttggtgacatgtcattgagaagaat 104386

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>gb|AF064863.3| Homo sapiens chromosome 21 clone RP1-111A18 map 21q22.2, complete
             sequence
          Length = 135332

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 323   tttggttttagttttggctgga 344
             ||||||||||||||||||||||
Sbjct: 43839 tttggttttagttttggctgga 43860

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>gb|BT016136.1| Drosophila melanogaster GH01148 full insert cDNA
          Length = 3014

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 tcctcagcatcaaagtcgttg 284
           |||||||||||||||||||||
Sbjct: 816 tcctcagcatcaaagtcgttg 796

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>gb|AC093195.2| Drosophila melanogaster clone BACR16J09, complete sequence
          Length = 178863

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 264    tcctcagcatcaaagtcgttg 284
              |||||||||||||||||||||
Sbjct: 155807 tcctcagcatcaaagtcgttg 155827

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>gb|AC008328.6| Drosophila melanogaster clone BACR09A04, complete sequence
          Length = 166722

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 264    tcctcagcatcaaagtcgttg 284
              |||||||||||||||||||||
Sbjct: 114054 tcctcagcatcaaagtcgttg 114074

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>gb|AC135361.3| Mus musculus BAC clone RP23-216A21 from chromosome 14, complete
             sequence
          Length = 203946

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 351   atttatgctatatcaagcatt 371
             |||||||||||||||||||||
Sbjct: 57816 atttatgctatatcaagcatt 57796

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>gb|AC116572.3| Mus musculus BAC clone RP23-101D16 from 14, complete sequence
          Length = 199090

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 351  atttatgctatatcaagcatt 371
            |||||||||||||||||||||
Sbjct: 7213 atttatgctatatcaagcatt 7193

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>emb|AL390879.20| Human DNA sequence from clone RP11-308D16 on chromosome Xq25-27.1
             Contains the 3' end of a novel gene, a serine/arginine
             repetitive matrix 1 (SRRM1) pseudogene (LOC347480), the
             GPR101 gene for G protein-coupled receptor 101 and four
             CpG islands, complete sequence
          Length = 172280

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 318   gataatttggttttagttttg 338
             |||||||||||||||||||||
Sbjct: 15677 gataatttggttttagttttg 15657

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>emb|AL160060.11| Human DNA sequence from clone RP11-207K8 on chromosome 10 Contains part
             of the SVIL gene for supervillin (archvillin), complete
             sequence
          Length = 171800

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 216   tggaatcttcctgatggacagatgg 240
             ||||||||||||||||| |||||||
Sbjct: 79247 tggaatcttcctgatgggcagatgg 79223

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>gb|AC002391.3| Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete
             sequence
          Length = 108881

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 317   agataatttggttttagtttt 337
             |||||||||||||||||||||
Sbjct: 82262 agataatttggttttagtttt 82282

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>ref|NM_135309.1| Drosophila melanogaster CG7134-RA (CG7134), mRNA
          Length = 3743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  tcctcagcatcaaagtcgttg 284
            |||||||||||||||||||||
Sbjct: 1099 tcctcagcatcaaagtcgttg 1079

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>gb|AC008329.3|AC008329 Drosophila melanogaster, chromosome 2L, region 28C-28D, BAC clone
             BACR31D05, complete sequence
          Length = 172633

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   tcctcagcatcaaagtcgttg 284
             |||||||||||||||||||||
Sbjct: 14811 tcctcagcatcaaagtcgttg 14831

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>gb|AC154856.2| Mus musculus BAC clone RP23-20C2 from 13, complete sequence
          Length = 248953

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   tcaagcaggttgttcaatcac 441
             |||||||||||||||||||||
Sbjct: 97649 tcaagcaggttgttcaatcac 97629

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>emb|CR352256.11| Zebrafish DNA sequence from clone CH211-218G23 in linkage group 11,
            complete sequence
          Length = 111902

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 366  agcattgatggactcatttct 386
            |||||||||||||||||||||
Sbjct: 9081 agcattgatggactcatttct 9061

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>gb|AE003618.3| Drosophila melanogaster chromosome 2L, section 27 of 83 of the complete
              sequence
          Length = 268661

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 264    tcctcagcatcaaagtcgttg 284
              |||||||||||||||||||||
Sbjct: 253801 tcctcagcatcaaagtcgttg 253821

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>gb|AC004722.1|AC004722 Drosophila melanogaster DNA sequence (P1 DS02760 (D286)), complete
             sequence
          Length = 76619

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   tcctcagcatcaaagtcgttg 284
             |||||||||||||||||||||
Sbjct: 56809 tcctcagcatcaaagtcgttg 56829

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>gb|AC166056.2| Mus musculus BAC clone RP23-462A15 from chromosome 13, complete
             sequence
          Length = 198814

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ctcagaagagtgggaggagg 47
             ||||||||||||||||||||
Sbjct: 48593 ctcagaagagtgggaggagg 48612

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>ref|NM_054080.1| Mus musculus aldo-keto reductase family 1, member C20 (Akr1c20), mRNA
          Length = 1306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 28   ctcagaagagtgggaggagg 47
            ||||||||||||||||||||
Sbjct: 1103 ctcagaagagtgggaggagg 1122

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>gb|BT018654.1| Zea mays clone EL01N0506H01.d mRNA sequence
          Length = 1428

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 tctatcagctggaaaatatg 177
           ||||||||||||||||||||
Sbjct: 214 tctatcagctggaaaatatg 195

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>gb|AC164613.3| Mus musculus BAC clone RP23-324B8 from chromosome 13, complete sequence
          Length = 197469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     ctcagaagagtgggaggagg 47
              ||||||||||||||||||||
Sbjct: 165575 ctcagaagagtgggaggagg 165594

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>gb|AC146155.3| Pan troglodytes BAC clone RP43-37F3 from 7, complete sequence
          Length = 159409

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   gagaagaataaccccattga 148
             ||||||||||||||||||||
Sbjct: 57944 gagaagaataaccccattga 57925

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>emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 in linkage group 11,
             complete sequence
          Length = 140484

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tatcagctggaaaatatgtt 179
             ||||||||||||||||||||
Sbjct: 42125 tatcagctggaaaatatgtt 42144

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>gb|AC005251.1| Homo sapiens BAC clone CTA-324D18 from 7, complete sequence
          Length = 92636

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   gagaagaataaccccattga 148
             ||||||||||||||||||||
Sbjct: 68549 gagaagaataaccccattga 68568

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>gb|AC018525.8| Homo sapiens chromosome 8, clone RP11-3J13, complete sequence
          Length = 150052

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    tacaagataatttggtttta 332
              ||||||||||||||||||||
Sbjct: 128600 tacaagataatttggtttta 128619

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>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence
          Length = 178736

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    tacaagataatttggtttta 332
              ||||||||||||||||||||
Sbjct: 118748 tacaagataatttggtttta 118729

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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ggaggcgtgttgtggtcttg 62
              ||||||||||||||||||||
Sbjct: 142340 ggaggcgtgttgtggtcttg 142321

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>gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 142000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   tggatttatgctatatcaag 367
             ||||||||||||||||||||
Sbjct: 86128 tggatttatgctatatcaag 86147

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>dbj|AK012162.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:2610528B18 product:hydroxysteroid
            17-beta dehydrogenase 1, full insert sequence
          Length = 1306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 28   ctcagaagagtgggaggagg 47
            ||||||||||||||||||||
Sbjct: 1103 ctcagaagagtgggaggagg 1122

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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 135     aataaccccattgatcagct 154
               ||||||||||||||||||||
Sbjct: 2226424 aataaccccattgatcagct 2226405

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>emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 in linkage group 1,
             complete sequence
          Length = 196036

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   ataatttggttttagttttg 338
             ||||||||||||||||||||
Sbjct: 64031 ataatttggttttagttttg 64050

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>gb|AY107581.1| Zea mays PCO087321 mRNA sequence
          Length = 882

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 457 tctatgttgttgggattgct 476
           ||||||||||||||||||||
Sbjct: 616 tctatgttgttgggattgct 635

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>dbj|AP005354.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1159C3, complete
             sequence
          Length = 133276

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tacaagataatttggtttta 332
             ||||||||||||||||||||
Sbjct: 80860 tacaagataatttggtttta 80879

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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    ttggttttagttttggctgg 343
              ||||||||||||||||||||
Sbjct: 506742 ttggttttagttttggctgg 506723

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>emb|AL672056.4| Mouse DNA sequence from clone RP23-467O2 on chromosome X, complete
              sequence
          Length = 150695

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    tgtcattgagaagaataacc 141
              ||||||||||||||||||||
Sbjct: 122565 tgtcattgagaagaataacc 122584


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,918,802
Number of Sequences: 3902068
Number of extensions: 4918802
Number of successful extensions: 92791
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92574
Number of HSP's gapped (non-prelim): 217
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result