ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26c09 |
|---|---|
| Clone Library Name | barley_pub |
>NOP14_HUMAN (P78316) Probable nucleolar complex protein 14| Length = 857 Score = 60.1 bits (144), Expect = 3e-09 Identities = 29/67 (43%), Positives = 44/67 (65%) Frame = +1 Query: 256 SNPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRI 435 SNPFE +R+KF +LG+K + + SR+ A+ KR TLLKE+++ KS+VF D+R Sbjct: 29 SNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSNVFRDKRF 88 Query: 436 GERDETL 456 GE + + Sbjct: 89 GEYNSNM 95
>NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14| Length = 860 Score = 58.5 bits (140), Expect = 8e-09 Identities = 28/66 (42%), Positives = 43/66 (65%) Frame = +1 Query: 259 NPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 438 NPFE +R+KF +LG+K + + SR+ A+ KR TLLKE+++ KS+VF D+R G Sbjct: 30 NPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIRKRTQTLLKEYKERNKSNVFADKRFG 89 Query: 439 ERDETL 456 E + + Sbjct: 90 EYNSNI 95
>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14| Length = 827 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/66 (34%), Positives = 35/66 (53%) Frame = +1 Query: 259 NPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIG 438 N F+ +++RKFDV G++ KG E + SR R T+ E ++ +S DRR G Sbjct: 52 NLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFG 111 Query: 439 ERDETL 456 E + L Sbjct: 112 ENNPHL 117
>NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14| Length = 832 Score = 33.9 bits (76), Expect = 0.21 Identities = 18/69 (26%), Positives = 30/69 (43%) Frame = +1 Query: 250 ERSNPFEAIWSRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDR 429 ++ NPF+ +R+K D+ G+ +G R S+ R E + + DR Sbjct: 50 QQFNPFDVKVARKKHDIGGRTVRGSVGRPGLSKLSGEEARMEARKLELQNKGRVGGVFDR 109 Query: 430 RIGERDETL 456 R GE D + Sbjct: 110 RFGEGDSNM 118
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 30.8 bits (68), Expect = 1.8 Identities = 21/60 (35%), Positives = 27/60 (45%) Frame = +3 Query: 288 QVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRLP*PAHRREGRDSARVR 467 Q + Q Q RG H + E E P G R ++ R AH+ +GRDSAR R Sbjct: 165 QHQHGHQHEQQRGHQHQ----HQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPR 220
>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein| 4.2) (Ultrahigh sulfur keratin-associated protein 4.2) Length = 136 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -3 Query: 376 CSPSCGQRRSGSGRCASPRPCASCRARRTCGA 281 C PSCGQ C P C S R TC + Sbjct: 101 CRPSCGQTTCCRTTCYRPSCCVSTCCRPTCSS 132
>B4GT4_MOUSE (Q9JJ04) Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-)| (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4) [Includes: N Length = 344 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -2 Query: 458 GRVSSLSPMRRSWKTDDLALCSNSLSRV 375 GR+ L M R WKTD L+ CS L V Sbjct: 300 GRMKLLQQMSRVWKTDGLSSCSYRLLSV 327
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -3 Query: 430 AGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTC 287 A RR R A C P C QR + A+ CA C++ TC Sbjct: 469 AACSRRGRGRGALKSPEECPPLCSQRLTCEDCLANSSQCAWCQSTHTC 516
>MS87F_DROME (P08175) Male-specific sperm protein Mst87F| Length = 56 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/31 (38%), Positives = 12/31 (38%) Frame = -3 Query: 376 CSPSCGQRRSGSGRCASPRPCASCRARRTCG 284 C CG G G C P C C A CG Sbjct: 17 CCGPCGPCGGGCGPCYGPNVCGPCYACGPCG 47
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = +1 Query: 280 SRRKFDVLGKKRKGEERRTSRSRSDAVHKRENTLLKEFEQSAKSSVFHDRRIGER 444 S R+ KK + +E+R S+ R + HKR + +F + S F G R Sbjct: 99 SHRRLKRKRKKEREKEKRRSKKRRKSKHKRHASSSDDFSDFSDDSDFSPSEKGHR 153
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -3 Query: 403 RSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTCGATR 275 R+ R P GC P+ +R S G A P PC R G R Sbjct: 168 RAVRRP-CGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGR 209
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = -3 Query: 376 CSPSCGQRRSGSGRCASPR-PCASCRARRTCGATRW 272 C + G RRS S C PR P +C AR G W Sbjct: 2962 CDLARGYRRSRSRGCCPPRCPTPACAARTATGPGSW 2997
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 25.0 bits (53), Expect(2) = 8.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -3 Query: 427 GHGRRTTWRSARTP*AGCSPSCGQRRSGSGR 335 G GRR +WR R G + + G R G GR Sbjct: 564 GRGRRGSWRGGRR--GGGAGASGGGRGGRGR 592 Score = 21.9 bits (45), Expect(2) = 8.2 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 5/28 (17%) Frame = -1 Query: 282 RPDGLEGV-----APLRRRGPARLHGHG 214 R GL G +P RRG R GHG Sbjct: 598 RGSGLSGTREDAGSPSARRGEQRRRGHG 625
>CH10_BRUSU (P0A343) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +3 Query: 258 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 419 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>CH10_BRUME (P0A342) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +3 Query: 258 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 419 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>CH10_BRUAB (P0A344) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 98 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +3 Query: 258 QPLRGHLVAPQVRRARQEAQGRGEAHLPLPLRRCPQEGEHPAQGVRAERQVVRL 419 +PL +V VRR EA+ G +P + PQEGE A G A + +L Sbjct: 7 RPLHDRVV---VRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKL 57
>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable| element R1DM (ORF 1) Length = 471 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = -3 Query: 466 RTRAESRPSRRCAGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRAR 296 R++ + RC G + + R + C CGQ+ + +C +P C +CR R Sbjct: 391 RSQVRTYACHRCVGFDHKVS--ECRQKESVCR-QCGQQGHTAAKCQNPVDCRNCRHR 444
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -3 Query: 430 AGHGRRTTWRSARTP*AGCSPSCGQRRSGSGRCASPRPCASCRARRTC 287 A RR R A C P C QR + A+ CA C++ TC Sbjct: 469 AACSRRGRGRGALKNPEECPPLCSQRLTCEDCLANSSQCAWCQSTHTC 516 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.128 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,565,975 Number of Sequences: 219361 Number of extensions: 511194 Number of successful extensions: 2725 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2499 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2713 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
