ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26c08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence Length = 154558 Score = 335 bits (169), Expect = 8e-89 Identities = 277/313 (88%) Strand = Plus / Minus Query: 137 agaacctggtggcatattaatcctggatatttgatcgaacggaaatttggagctccttgt 196 |||||||||||||||||||| |||||| ||| || | ||||| |||||||||||| | Sbjct: 26623 agaacctggtggcatattaacattggatacttggtcaactggaaaattggagctccttat 26564 Query: 197 tcatgtcttcaatggagagcctagcacagttagaggtgttgtgcgaaaagctttacaact 256 ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| | Sbjct: 26563 tcatgtcatcaatggagagcctagcacagttagagctgttgtgtgaaaagctttacaatt 26504 Query: 257 ctagagactcggctgagagagcacatgcagaaagcacgctcaagtgcttctcagagaaca 316 |||||||||| |||||| ||||||| || ||||||| |||||||||||||| ||||||| Sbjct: 26503 ctagagactctgctgagcgagcacacgctgaaagcatcctcaagtgcttctcggagaaca 26444 Query: 317 gtgactacatttcgcagtgccaatatatattggacaatgcgtcaactccatatgccttga 376 ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct: 26443 gtgactacatttcacagtgccaatatatattggacaatgcctcaacaccatatgccctga 26384 Query: 377 tgttggccagtacaagcttggtgaagcaagtctcagatcgcagtctttctctgcaattgc 436 || |||||||| |||||||| |||| |||||| || ||||||||||| ||||||||| Sbjct: 26383 tgctggccagttcaagcttgttgaaccaagtcaacgaccgcagtctttcattgcaattgc 26324 Query: 437 gcctcgatatccg 449 |||| |||||||| Sbjct: 26323 gccttgatatccg 26311
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 335 bits (169), Expect = 8e-89 Identities = 277/313 (88%) Strand = Plus / Minus Query: 137 agaacctggtggcatattaatcctggatatttgatcgaacggaaatttggagctccttgt 196 |||||||||||||||||||| |||||| ||| || | ||||| |||||||||||| | Sbjct: 23190142 agaacctggtggcatattaacattggatacttggtcaactggaaaattggagctccttat 23190083 Query: 197 tcatgtcttcaatggagagcctagcacagttagaggtgttgtgcgaaaagctttacaact 256 ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| | Sbjct: 23190082 tcatgtcatcaatggagagcctagcacagttagagctgttgtgtgaaaagctttacaatt 23190023 Query: 257 ctagagactcggctgagagagcacatgcagaaagcacgctcaagtgcttctcagagaaca 316 |||||||||| |||||| ||||||| || ||||||| |||||||||||||| ||||||| Sbjct: 23190022 ctagagactctgctgagcgagcacacgctgaaagcatcctcaagtgcttctcggagaaca 23189963 Query: 317 gtgactacatttcgcagtgccaatatatattggacaatgcgtcaactccatatgccttga 376 ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct: 23189962 gtgactacatttcacagtgccaatatatattggacaatgcctcaacaccatatgccctga 23189903 Query: 377 tgttggccagtacaagcttggtgaagcaagtctcagatcgcagtctttctctgcaattgc 436 || |||||||| |||||||| |||| |||||| || ||||||||||| ||||||||| Sbjct: 23189902 tgctggccagttcaagcttgttgaaccaagtcaacgaccgcagtctttcattgcaattgc 23189843 Query: 437 gcctcgatatccg 449 |||| |||||||| Sbjct: 23189842 gccttgatatccg 23189830
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 335 bits (169), Expect = 8e-89 Identities = 277/313 (88%) Strand = Plus / Minus Query: 137 agaacctggtggcatattaatcctggatatttgatcgaacggaaatttggagctccttgt 196 |||||||||||||||||||| |||||| ||| || | ||||| |||||||||||| | Sbjct: 23183170 agaacctggtggcatattaacattggatacttggtcaactggaaaattggagctccttat 23183111 Query: 197 tcatgtcttcaatggagagcctagcacagttagaggtgttgtgcgaaaagctttacaact 256 ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| | Sbjct: 23183110 tcatgtcatcaatggagagcctagcacagttagagctgttgtgtgaaaagctttacaatt 23183051 Query: 257 ctagagactcggctgagagagcacatgcagaaagcacgctcaagtgcttctcagagaaca 316 |||||||||| |||||| ||||||| || ||||||| |||||||||||||| ||||||| Sbjct: 23183050 ctagagactctgctgagcgagcacacgctgaaagcatcctcaagtgcttctcggagaaca 23182991 Query: 317 gtgactacatttcgcagtgccaatatatattggacaatgcgtcaactccatatgccttga 376 ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct: 23182990 gtgactacatttcacagtgccaatatatattggacaatgcctcaacaccatatgccctga 23182931 Query: 377 tgttggccagtacaagcttggtgaagcaagtctcagatcgcagtctttctctgcaattgc 436 || |||||||| |||||||| |||| |||||| || ||||||||||| ||||||||| Sbjct: 23182930 tgctggccagttcaagcttgttgaaccaagtcaacgaccgcagtctttcattgcaattgc 23182871 Query: 437 gcctcgatatccg 449 |||| |||||||| Sbjct: 23182870 gccttgatatccg 23182858
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 323 bits (163), Expect = 3e-85 Identities = 244/271 (90%) Strand = Plus / Minus Query: 177 ggaaatttggagctccttgttcatgtcttcaatggagagcctagcacagttagaggtgtt 236 ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| Sbjct: 9808198 ggaaaattggagctccttattcatgtcatcaatggagagcctagcacagttagagctgtt 9808139 Query: 237 gtgcgaaaagctttacaactctagagactcggctgagagagcacatgcagaaagcacgct 296 || |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| || Sbjct: 9808138 atgtgaaaagctttacaattctagagactccgctgagcgagcacatgcagaaagcaccct 9808079 Query: 297 caagtgcttctcagagaacagtgactacatttcgcagtgccaatatatattggacaatgc 356 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 9808078 caagtgcttctcggagaacagtgactacatttcacagtgccaatatatattggacaatgc 9808019 Query: 357 gtcaactccatatgccttgatgttggccagtacaagcttggtgaagcaagtctcagatcg 416 ||||| ||||||||| ||||| |||||||| |||||||| |||| |||||| || || Sbjct: 9808018 ctcaacaccatatgccctgatgctggccagttcaagcttgttgaaccaagtcaacgaccg 9807959 Query: 417 cagtctttctctgcaattgcgcctcgatatc 447 ||||||||| |||||||||| || |||||| Sbjct: 9807958 cagtctttcattgcaattgcgtcttgatatc 9807928
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 323 bits (163), Expect = 3e-85 Identities = 244/271 (90%) Strand = Plus / Minus Query: 177 ggaaatttggagctccttgttcatgtcttcaatggagagcctagcacagttagaggtgtt 236 ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| Sbjct: 72448 ggaaaattggagctccttattcatgtcatcaatggagagcctagcacagttagagctgtt 72389 Query: 237 gtgcgaaaagctttacaactctagagactcggctgagagagcacatgcagaaagcacgct 296 || |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| || Sbjct: 72388 atgtgaaaagctttacaattctagagactccgctgagcgagcacatgcagaaagcaccct 72329 Query: 297 caagtgcttctcagagaacagtgactacatttcgcagtgccaatatatattggacaatgc 356 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 72328 caagtgcttctcggagaacagtgactacatttcacagtgccaatatatattggacaatgc 72269 Query: 357 gtcaactccatatgccttgatgttggccagtacaagcttggtgaagcaagtctcagatcg 416 ||||| ||||||||| ||||| |||||||| |||||||| |||| |||||| || || Sbjct: 72268 ctcaacaccatatgccctgatgctggccagttcaagcttgttgaaccaagtcaacgaccg 72209 Query: 417 cagtctttctctgcaattgcgcctcgatatc 447 ||||||||| |||||||||| || |||||| Sbjct: 72208 cagtctttcattgcaattgcgtcttgatatc 72178
>ref|NM_188109.1| Oryza sativa (japonica cultivar-group), Ozsa8541 predicted mRNA Length = 2400 Score = 311 bits (157), Expect = 1e-81 Identities = 241/269 (89%) Strand = Plus / Plus Query: 199 atgtcttcaatggagagcctagcacagttagaggtgttgtgcgaaaagctttacaactct 258 ||||| ||||||||||||||||||||||||||| |||| || |||||||||||||| ||| Sbjct: 1 atgtcatcaatggagagcctagcacagttagagctgttatgtgaaaagctttacaattct 60 Query: 259 agagactcggctgagagagcacatgcagaaagcacgctcaagtgcttctcagagaacagt 318 |||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 61 agagactccgctgagcgagcacatgcagaaagcaccctcaagtgcttctcggagaacagt 120 Query: 319 gactacatttcgcagtgccaatatatattggacaatgcgtcaactccatatgccttgatg 378 ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||| Sbjct: 121 gactacatttcacagtgccaatatatattggacaatgcctcaacaccatatgccctgatg 180 Query: 379 ttggccagtacaagcttggtgaagcaagtctcagatcgcagtctttctctgcaattgcgc 438 |||||||| |||||||| |||| |||||| || ||||||||||| |||||||||| Sbjct: 181 ctggccagttcaagcttgttgaaccaagtcaacgaccgcagtctttcattgcaattgcgt 240 Query: 439 ctcgatatccggaattatgtcatgaacta 467 || |||||| |||||||||||| ||||| Sbjct: 241 cttgatatcttgaattatgtcataaacta 269
>emb|Z63343.1|HS81C5R H.sapiens CpG island DNA genomic Mse1 fragment, clone 81c5, reverse read cpg81c5.rt1a Length = 328 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 tttccgttttccacacacctc 23 ||||||||||||||||||||| Sbjct: 294 tttccgttttccacacacctc 274
>ref|XM_749570.1| Aspergillus fumigatus Af293 DNA polymerase epsilon, catalytic subunit A/POL2 (Afu3g09560) partial mRNA Length = 6693 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 acaactctagagactcggct 270 |||||||||||||||||||| Sbjct: 6181 acaactctagagactcggct 6200
>gb|AC129180.3| Mus musculus BAC clone RP23-304I16 from 18, complete sequence Length = 170737 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cttctcagagaacagtgact 322 |||||||||||||||||||| Sbjct: 56081 cttctcagagaacagtgact 56100
>gb|AC016136.21| Homo sapiens 12 BAC RP11-1036M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176704 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 ctcagagaacagtgactacatttc 329 |||||||||||| ||||||||||| Sbjct: 91623 ctcagagaacagagactacatttc 91600
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tttccgttttccacacacct 22 |||||||||||||||||||| Sbjct: 3173678 tttccgttttccacacacct 3173659 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,907,584 Number of Sequences: 3902068 Number of extensions: 3907584 Number of successful extensions: 60415 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60306 Number of HSP's gapped (non-prelim): 106 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
