ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl26c07 |
|---|---|
| Clone Library Name | barley_pub |
>REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)| Length = 619 Score = 34.3 bits (77), Expect = 0.18 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%) Frame = +3 Query: 168 LPSSSWTSLAD*SPNSPQIPPLS----REIPNLAHGRRPWCRAP 287 LPSSSW+S+A +P S PLS R +P+ + G P+ R P Sbjct: 407 LPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIP 450
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 33.5 bits (75), Expect = 0.30 Identities = 23/80 (28%), Positives = 28/80 (35%) Frame = +3 Query: 72 DTHPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPN 251 +T PP+ P C + C PK P + T P PP R P Sbjct: 39 ETEPPRCETEPPRCETEPPRC--ETTTPKCETTPPTCRTE----PPTCKTEPPTCRTEPP 92 Query: 252 LAHGRRPWCRAPTPTCLTWP 311 + P CR PTC T P Sbjct: 93 TCKTKPPTCRTEPPTCRTEP 112 Score = 31.2 bits (69), Expect = 1.5 Identities = 23/79 (29%), Positives = 27/79 (34%) Frame = +3 Query: 75 THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 254 T PP + P C + C R P + P + T P PP R P Sbjct: 89 TEPPTCKTKPPTCRTEPPTC--RTEPPTCKTKPPTCKTE----PPTCKTEPPTCRTEPPT 142 Query: 255 AHGRRPWCRAPTPTCLTWP 311 P CR PTC T P Sbjct: 143 CKTEPPTCRTEPPTCKTEP 161 Score = 29.6 bits (65), Expect = 4.4 Identities = 22/79 (27%), Positives = 27/79 (34%) Frame = +3 Query: 75 THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 254 T PP+ P C + C P+ P T+ +P PP R P Sbjct: 26 TEPPRCETEPPRCETEPPRCETEP--PRCETEPPRCETT----TPKCETTPPTCRTEPPT 79 Query: 255 AHGRRPWCRAPTPTCLTWP 311 P CR PTC T P Sbjct: 80 CKTEPPTCRTEPPTCKTKP 98 Score = 28.9 bits (63), Expect = 7.5 Identities = 22/79 (27%), Positives = 26/79 (32%) Frame = +3 Query: 75 THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 254 T PP R P C + C P + P + T P PP R P Sbjct: 103 TEPPTCRTEPPTCKTKPPTCKTEP--PTCKTEPPTCRTE----PPTCKTEPPTCRTEPPT 156 Query: 255 AHGRRPWCRAPTPTCLTWP 311 P C+ PTC T P Sbjct: 157 CKTEPPTCKTEPPTCKTEP 175
>RS14_RAT (P13471) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.88 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_MOUSE (P62264) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.88 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_HUMAN (P62263) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.88 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_CRIGR (P62265) 40S ribosomal protein S14| Length = 150 Score = 32.0 bits (71), Expect = 0.88 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>HIS42_SILPO (Q5LR59) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2 (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 2) Length = 247 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -3 Query: 179 GRREAPIFWHTVPGETVEGLGSAATR--HPPDL 87 GR +AP+ WH P ETV G SA H DL Sbjct: 20 GRLDAPMLWHVDPFETVSGWASAGAEWMHLTDL 52
>RS14_KLULA (P27069) 40S ribosomal protein S14 (RP59)| Length = 137 Score = 31.2 bits (69), Expect = 1.5 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +RS TP P + +R AR G +GRI S S R GGRR Sbjct: 87 GGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>KGUA_ACIAD (Q6F7H0) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 207 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 264 SREQDSGFREKGEGFGENWGFNQRAKSRRKKGGADILAHSSWR 136 S+ +D+GF E E FG +G +Q ++ G D+L W+ Sbjct: 61 SQVEDNGFIEYAEVFGNYYGTSQATVKQQLAKGHDVLLEIDWQ 103
>RS14_CHLRE (P46295) 40S ribosomal protein S14| Length = 153 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P S +R AR G +GRI + S R GGRR Sbjct: 103 GGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRR 149
>RS14A_YEAST (P06367) 40S ribosomal protein S14-A (RP59A)| Length = 136 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 86 GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 132
>RS14B_YEAST (P39516) 40S ribosomal protein S14-B (RP59B)| Length = 137 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 87 GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>K0329_HUMAN (O15040) Protein KIAA0329/KIAA0297| Length = 1411 Score = 30.0 bits (66), Expect = 3.3 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +1 Query: 4 RVGLGLLG*AQRERERETD-----AVSKTHTHPRSGGCLVAAEPRPSTVSPGTVCQNIGA 168 R GL + G ++R ++ + VS+T S VA+EPR + S + + G+ Sbjct: 363 RDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNST--DSGS 420 Query: 169 SLLPPGLRSLIE 204 LLPPGL++ E Sbjct: 421 GLLPPGLQATPE 432
>RS14_PROCL (P48855) 40S ribosomal protein S14| Length = 151 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 101 GGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDSTRRKGGRR 147
>RS14_PODCA (Q08699) 40S ribosomal protein S14| Length = 151 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 101 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRRKGGRR 147
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -2 Query: 237 EKGEGFGENWGFNQRAKSRRK-KGGADILAHSSWRD 133 EKGE GE+W ++ K+ + KGG + SWRD Sbjct: 174 EKGEIVGESWKKDEPTKADKNWKGGKEEREFRSWRD 209
>RS14_CAEEL (P48150) 40S ribosomal protein S14| Length = 152 Score = 29.6 bits (65), Expect = 4.4 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 102 GGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCTRRKGGRR 148
>RS143_ARATH (P42036) 40S ribosomal protein S14-3| Length = 150 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)| Length = 150 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 146
>RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2| Length = 150 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1| Length = 150 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS14_CANAL (Q96W53) 40S ribosomal protein S14| Length = 134 Score = 29.6 bits (65), Expect = 4.4 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 84 GGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDSTRRKGGRR 130
>RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)| Length = 149 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 99 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 145
>YM2A_CAEEL (P34447) Hypothetical protein F54F2.2, isoform a| Length = 867 Score = 28.9 bits (63), Expect = 7.5 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = +1 Query: 31 AQRERERETDAVSKTHTHPRSGGCLVAAEPRPSTV----SPGTVCQNIGASLLPPGLRSL 198 A+R R+ + D + KTH PR A RP V S G+ +G S L++L Sbjct: 433 AKRIRDSKNDMMDKTHKRPR-------ANARPPAVLGSMSSGSSGGTVGKSPSMQRLQNL 485 Query: 199 IEAPILPKSLPFLAKSRI 252 + API+ +++ + R+ Sbjct: 486 V-APIVSETVTDFQRDRV 502
>RS14_NEUCR (P19115) 40S ribosomal protein S14 (CRP2)| Length = 150 Score = 28.9 bits (63), Expect = 7.5 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRI-----GASISERSPGGRR 171 G + + TP P S +R AR G +GRI S S R GGRR Sbjct: 100 GGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRR 146
>WOX4_ARATH (Q6X7J9) WUSCHEL-related homeobox 4| Length = 251 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +3 Query: 9 RPWPTGVSTKRERERDGRSEQDTHPPQVRWMP 104 RP TG TK E +RD + +THP RW P Sbjct: 63 RPDQTG-PTKFEHKRDPPHQLETHPGGTRWNP 93
>DPOE_CRYNE (Q5K9M7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2250 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 243 FREKGEGFGENWGFNQRAKSRRK-KGGADILAHSSWRDS*RPGLSSNKAS 97 FR +G G G +G N R RR+ +GG ++ RP S+N+A+ Sbjct: 7 FRGRGRGSGSGFGSNTRFTGRRRGRGGGGGGGGVAYGIDRRPATSTNQAN 56
>TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily member 6B| precursor (Decoy receptor for Fas ligand) (Decoy receptor 3) (DcR3) (M68) Length = 300 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 11/60 (18%) Frame = +1 Query: 40 ERERETDAVSKTHTHP---------RSGGCLVAAE--PRPSTVSPGTVCQNIGASLLPPG 186 ERE E A TH +G CL A P ++PGT QN PPG Sbjct: 97 EREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPG 156
>GALT9_MACFA (Q9GM01) Polypeptide N-acetylgalactosaminyltransferase 9 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 9) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9) (Polypeptide GalNAc transferase 9) (GalNAc-T9) (pp-GaNTase 9) Length = 606 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 67 SKTHTHPRSGGCLVAAEPRPSTVSPGTVCQNIGASLLPPGLRSLIEAPILP 219 S+ P SGGC PRP+T +PG+ ++ G + G L+ LP Sbjct: 34 SQELVRPLSGGC----RPRPATPAPGSPLRSGGPRAVVAGRAELVLKGQLP 80
>TRAM4_ECOLI (Q00186) Protein traM| Length = 144 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 279 DTMASSREQDSGFREKGEGFGENWGFNQRAKSRRKKGGA 163 D+ A E + F+E+ EG WG + +AK+ R A Sbjct: 38 DSAAKQEEILAAFKEELEGIAHRWGEDAKAKAERMLNAA 76
>RS14_DROME (P14130) 40S ribosomal protein S14| Length = 151 Score = 28.5 bits (62), Expect = 9.7 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171 G +++ TP P S +R AR +GRI S S R GGRR Sbjct: 101 GGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKGGRR 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,840,698 Number of Sequences: 219361 Number of extensions: 1093619 Number of successful extensions: 3918 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3904 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
