Clone Name | bastl26c07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_187597.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2583 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 377 gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 436 ||||| ||||| |||||||||| || |||||||| ||||||||| |||||||||||| Sbjct: 106 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 165 Query: 437 gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgg 484 ||||||| |||||||||||||| ||||||||||||||||| |||||| Sbjct: 166 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgg 213 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 284 tcctactccaacctgcttgacctggcc 310 ||||||||||||||||| ||||||||| Sbjct: 13 tcctactccaacctgctggacctggcc 39
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Minus Query: 377 gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 436 ||||| ||||| |||||||||| || |||||||| ||||||||| |||||||||||| Sbjct: 6490619 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 6490560 Query: 437 gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgg 484 ||||||| |||||||||||||| ||||||||||||||||| |||||| Sbjct: 6490559 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgg 6490512 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 284 tcctactccaacctgcttgacctggcc 310 ||||||||||||||||| ||||||||| Sbjct: 6490712 tcctactccaacctgctggacctggcc 6490686
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Minus Query: 377 gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 436 ||||| ||||| |||||||||| || |||||||| ||||||||| |||||||||||| Sbjct: 33381 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 33322 Query: 437 gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgg 484 ||||||| |||||||||||||| ||||||||||||||||| |||||| Sbjct: 33321 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgg 33274 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 284 tcctactccaacctgcttgacctggcc 310 ||||||||||||||||| ||||||||| Sbjct: 33474 tcctactccaacctgctggacctggcc 33448
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Minus Query: 377 gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 436 ||||| ||||| |||||||||| || |||||||| ||||||||| |||||||||||| Sbjct: 6489832 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 6489773 Query: 437 gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgg 484 ||||||| |||||||||||||| ||||||||||||||||| |||||| Sbjct: 6489772 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgg 6489725 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 284 tcctactccaacctgcttgacctggcc 310 ||||||||||||||||| ||||||||| Sbjct: 6489925 tcctactccaacctgctggacctggcc 6489899
>dbj|AB168794.1| Macaca fascicularis testis cDNA, clone: QtsA-14815, similar to human zinc finger protein 451 (ZNF451), mRNA, RefSeq: NM_015555.1 Length = 2330 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 2 atcgagtcggccttggcctactgg 25 |||||||||||||||||||||||| Sbjct: 3 atcgagtcggccttggcctactgg 26
>gb|AC165079.2| Mus musculus BAC clone RP24-92K17 from chromosome 16, complete sequence Length = 156977 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 agacacacacccaccccaggt 91 ||||||||||||||||||||| Sbjct: 147173 agacacacacccaccccaggt 147153
>gb|AC154524.2| Mus musculus BAC clone RP24-68D23 from chromosome 16, complete sequence Length = 252926 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 agacacacacccaccccaggt 91 ||||||||||||||||||||| Sbjct: 2063 agacacacacccaccccaggt 2043
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 gccgtccccggcgccgcgccc 447 ||||||||||||||||||||| Sbjct: 3305385 gccgtccccggcgccgcgccc 3305405 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 426 cgccgtccccggcgccgcgcccgcg 450 ||||||||||| ||||||||||||| Sbjct: 1570108 cgccgtccccgccgccgcgcccgcg 1570084
>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence Length = 200891 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 426 cgccgtccccggcgccgcgcccgc 449 |||||||||||||||||| ||||| Sbjct: 68706 cgccgtccccggcgccgcccccgc 68683
>ref|XM_544464.2| PREDICTED: Canis familiaris similar to acid sphingomyelinase-like phosphodiesterase 3B isoform 1 (LOC487338), mRNA Length = 1407 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 ccccggcgccgcgcccgcgc 451 |||||||||||||||||||| Sbjct: 1329 ccccggcgccgcgcccgcgc 1348
>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence Length = 181705 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cgggaggaggccatggtgtc 279 |||||||||||||||||||| Sbjct: 106586 cgggaggaggccatggtgtc 106567
>gb|AC091231.10| Homo sapiens chromosome 15, clone RP11-702L15, complete sequence Length = 187779 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tggatgccttgttgctgctg 115 |||||||||||||||||||| Sbjct: 74265 tggatgccttgttgctgctg 74284
>emb|AL117344.12|HSJ395C13 Human DNA sequence from clone RP3-395C13 on chromosome 6q25.2-26 Contains the 5' end of a novel gene, a hypothetical protein PNAS-131 pseudogene and a CpG island, complete sequence Length = 150336 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gcgcctcccttcttcctcct 183 |||||||||||||||||||| Sbjct: 12867 gcgcctcccttcttcctcct 12848
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 cgtccccggcgccgcgcccg 448 |||||||||||||||||||| Sbjct: 1728411 cgtccccggcgccgcgcccg 1728392
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cctccacgccgtccccggcg 439 |||||||||||||||||||| Sbjct: 117217 cctccacgccgtccccggcg 117198
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gccgtccccggcgccgcgcc 446 |||||||||||||||||||| Sbjct: 118770 gccgtccccggcgccgcgcc 118751
>dbj|AK125637.1| Homo sapiens cDNA FLJ43649 fis, clone SYNOV4001326 Length = 3837 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gcgcctcccttcttcctcct 183 |||||||||||||||||||| Sbjct: 123 gcgcctcccttcttcctcct 142
>ref|XM_925812.1| PREDICTED: Homo sapiens hypothetical gene supported by AK125637 (LOC401280), mRNA Length = 3823 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gcgcctcccttcttcctcct 183 |||||||||||||||||||| Sbjct: 117 gcgcctcccttcttcctcct 136
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 caccatcgtcgtcgccaacc 470 |||||||||||||||||||| Sbjct: 15327459 caccatcgtcgtcgccaacc 15327478
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 caccatcgtcgtcgccaacc 470 |||||||||||||||||||| Sbjct: 44822 caccatcgtcgtcgccaacc 44841
>gb|AC090425.15| Homo sapiens 3 BAC RP11-15L13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97868 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cgcctcccttcttcctcctg 184 |||||||||||||||||||| Sbjct: 38628 cgcctcccttcttcctcctg 38609
>gb|AC073896.41| Homo sapiens 12 BAC RP11-977G19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174487 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcctcccttcttcctcctgg 185 |||||||||||||||||||| Sbjct: 85956 gcctcccttcttcctcctgg 85975
>ref|NM_001013682.1| Homo sapiens hypothetical gene supported by AK125637 (LOC401280), mRNA Length = 3837 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gcgcctcccttcttcctcct 183 |||||||||||||||||||| Sbjct: 123 gcgcctcccttcttcctcct 142
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 406 ctcccccgcgtccccctccacgccgtccccggcgcc 441 |||||||||||||||| || ||||| ||||||||| Sbjct: 57143 ctcccccgcgtcccccgccccgccgcgcccggcgcc 57178
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cgtggtcaccacgccggggc 395 |||||||||||||||||||| Sbjct: 2928350 cgtggtcaccacgccggggc 2928369
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 caccatcgtcgtcgccaacc 470 |||||||||||||||||||| Sbjct: 15335700 caccatcgtcgtcgccaacc 15335719
>emb|AL772319.13| Mouse DNA sequence from clone RP23-397E2 on chromosome 4, complete sequence Length = 206709 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cccttcttcctcctggactt 189 |||||||||||||||||||| Sbjct: 786 cccttcttcctcctggactt 805
>emb|Z75742.1|HSLUCA10 Human DNA sequence from clone XXcos-10 on chromosome 3, complete sequence Length = 36016 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 gctgctgagcccaggccttc 128 |||||||||||||||||||| Sbjct: 10812 gctgctgagcccaggccttc 10793
>emb|AL954151.8| Mouse DNA sequence from clone RP24-370P7 on chromosome 4, complete sequence Length = 3994 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cccttcttcctcctggactt 189 |||||||||||||||||||| Sbjct: 2780 cccttcttcctcctggactt 2799 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,222,431 Number of Sequences: 3902068 Number of extensions: 3222431 Number of successful extensions: 79154 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78391 Number of HSP's gapped (non-prelim): 763 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)