Clone Name | bastl26c04 |
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Clone Library Name | barley_pub |
>ref|XM_469640.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1013 Score = 416 bits (210), Expect = e-113 Identities = 348/394 (88%) Strand = Plus / Plus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 348 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 407 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 408 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 467 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 468 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 527 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||||||||| || ||||| || || | ||| || || || || || ||||||||| || Sbjct: 528 ccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttactac 587 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 588 aagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 647 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||| |||||| ||||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 648 gaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgcc 707 Query: 371 cttcagactaatctggtttccctgatctgccact 404 ||||| | ||| ||| ||| |||||||||||| Sbjct: 708 cttcaaaacaatttggcctccttgatctgccact 741 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 410 acagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 855 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 907
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 416 bits (210), Expect = e-113 Identities = 348/394 (88%) Strand = Plus / Minus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 29930120 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 29930061 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 29930060 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 29930001 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 29930000 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 29929941 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||||||||| || ||||| || || | ||| || || || || || ||||||||| || Sbjct: 29929940 ccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttactac 29929881 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29929880 aagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 29929821 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||| |||||| ||||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 29929820 gaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgcc 29929761 Query: 371 cttcagactaatctggtttccctgatctgccact 404 ||||| | ||| ||| ||| |||||||||||| Sbjct: 29929760 cttcaaaacaatttggcctccttgatctgccact 29929727 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Minus Query: 410 acagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 29929613 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 29929561
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 416 bits (210), Expect = e-113 Identities = 348/394 (88%) Strand = Plus / Plus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 80486 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 80545 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 80546 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 80605 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 80606 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 80665 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||||||||| || ||||| || || | ||| || || || || || ||||||||| || Sbjct: 80666 ccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttactac 80725 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80726 aagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 80785 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||| |||||| ||||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 80786 gaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgcc 80845 Query: 371 cttcagactaatctggtttccctgatctgccact 404 ||||| | ||| ||| ||| |||||||||||| Sbjct: 80846 cttcaaaacaatttggcctccttgatctgccact 80879 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Plus Query: 410 acagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 80993 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 81045
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 416 bits (210), Expect = e-113 Identities = 348/394 (88%) Strand = Plus / Minus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 96061 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 96002 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 96001 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 95942 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 95941 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 95882 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||||||||| || ||||| || || | ||| || || || || || ||||||||| || Sbjct: 95881 ccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttactac 95822 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95821 aagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 95762 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||| |||||| ||||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 95761 gaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgcc 95702 Query: 371 cttcagactaatctggtttccctgatctgccact 404 ||||| | ||| ||| ||| |||||||||||| Sbjct: 95701 cttcaaaacaatttggcctccttgatctgccact 95668 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Minus Query: 410 acagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 95554 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 95502
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 416 bits (210), Expect = e-113 Identities = 348/394 (88%) Strand = Plus / Minus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 30021542 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 30021483 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 30021482 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 30021423 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 30021422 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 30021363 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||||||||| || ||||| || || | ||| || || || || || ||||||||| || Sbjct: 30021362 ccaatttgcaggagcccaataccagacactgggaatagggttcgactacgcctttactac 30021303 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30021302 aagtgcctggaagctggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 30021243 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||| |||||| ||||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 30021242 gaccatagtgatcctgttaacttggacgtccaacggctacattccttgtttgatgttgcc 30021183 Query: 371 cttcagactaatctggtttccctgatctgccact 404 ||||| | ||| ||| ||| |||||||||||| Sbjct: 30021182 cttcaaaacaatttggcctccttgatctgccact 30021149 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Minus Query: 410 acagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 30021035 acagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 30020983
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Plus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| Sbjct: 185164 cagaatgctttggagcagttggcatccattgatctcattgagctatgcaaggaggccaga 185223 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 185224 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcatcatgtg 185283 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || ||||||||||| |||||||| ||||||||||| || ||||| ||||| || |||||| Sbjct: 185284 cttaactcatgtggccatgcctcattatgtgctgaatgcagccaaagatgcgacgtctgc 185343 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||||||||| |||||||| || || |||||||| || || | ||| || |||||| || Sbjct: 185344 ccaatttgcaggagtccaataccggacaatggaaacagggttcagctacgtctttactac 185403 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 185404 aagtgcctggaagagggccttatttctaagcagcacgatgaaaggtttcaggaaaaggaa 185463 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||||| ||| |||| |||||||||||||| ||||||||| ||||| ||||||||| Sbjct: 185464 gaccatggcaatccagttagcatggatgtccagcagctgcattcattgttcgatgttgca 185523 Score = 99.6 bits (50), Expect = 8e-18 Identities = 56/58 (96%) Strand = Plus / Plus Query: 405 atataacagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 185634 atatcacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 185691
>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete cds Length = 160480 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Plus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 112693 cagaatgcgttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 112752 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 112753 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcaccatgtg 112812 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || ||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct: 112813 cttaactcatgtggccatgcctcattatgtgctgagtgcagccaaagatgtgacgtctgc 112872 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||| ||||| |||||||| | || |||||||| || || | ||| || |||||| || Sbjct: 112873 ccaatctgcaggagtccaatatcggacaatggaaatagggttcagctacgtctttactac 112932 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct: 112933 aagtgcctggaagcgggccttatttctaagcagcacgatgacaggtttcaggaaaaggaa 112992 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 112993 gaccatggcaatcctgttagcatggatgtccagcggctgcattcattgtttgatgttgca 113052 Score = 99.6 bits (50), Expect = 8e-18 Identities = 56/58 (96%) Strand = Plus / Plus Query: 405 atataacagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 113163 atatcacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 113220
>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf copia_LTR and Huck gypsy_LTR retrotransposons, complete sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR and Opie1 copia_LTR retrotransposons, complete sequence; Ji copia_LTR retrotransposon, complete sequence; and unknown protein (adh1B), cyclin H-1 (adh1C), unknown protein (adh1D), hypothetical protein (adh1E), and unknown protein (adh1F) genes, complete cds Length = 126039 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Plus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 96024 cagaatgcgttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 96083 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 96084 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcaccatgtg 96143 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || ||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct: 96144 cttaactcatgtggccatgcctcattatgtgctgagtgcagccaaagatgtgacgtctgc 96203 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||| ||||| |||||||| | || |||||||| || || | ||| || |||||| || Sbjct: 96204 ccaatctgcaggagtccaatatcggacaatggaaatagggttcagctacgtctttactac 96263 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || ||| |||| | |||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct: 96264 aagtgcctggaagcgggccttatttctaagcagcacgatgacaggtttcaggaaaaggaa 96323 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 96324 gaccatggcaatcctgttagcatggatgtccagcggctgcattcattgtttgatgttgca 96383 Score = 99.6 bits (50), Expect = 8e-18 Identities = 56/58 (96%) Strand = Plus / Plus Query: 405 atataacagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 96494 atatcacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggcttt 96551
>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence Length = 78195 Score = 357 bits (180), Expect = 2e-95 Identities = 315/360 (87%) Strand = Plus / Plus Query: 11 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 70 ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 51854 cagaatgctttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 51913 Query: 71 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 130 ||||||| |||||||||||||| |||||||||||||| ||||||||||| | |||||| Sbjct: 51914 attgagcgttgccgtgcaactagagacttgagtagctgtggccgctatgttcgtcatgtg 51973 Query: 131 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 190 || ||||||||||| |||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct: 51974 cttaactcatgtggccatgcctcattatgtgctgagtgcagccaaagatgcgacatctgc 52033 Query: 191 ccaatttgcagaagtccaattcctgataatggaaaaagagtgcggctccgcctttaccac 250 ||||||||||| ||| |||| || || |||||||| || || ||||| || |||||| || Sbjct: 52034 ccaatttgcaggagttcaataccggacaatggaaatagggttcggctacgtctttactac 52093 Query: 251 aaatgcttggaggttggccttatctctaagcagcatgatgaaaggtttcaggaaaaggaa 310 || |||||||| | |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 52094 aagtgcttggaagcgggccttatttctaagcagcacgatgaaagatttcaggaaaaggaa 52153 Query: 311 ggccatggtgatcgtgttaacatggatgtccagcggctgcattccttgtttgatgttgca 370 | |||||| ||| ||||| |||||||||||||||||||||||| ||||| ||||||||| Sbjct: 52154 gaccatggcaatcctgttagcatggatgtccagcggctgcattcattgttcgatgttgca 52213 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 405 atataacagatgtttgtttggatgaggatgctgtgtcaagtgatccacttctggcttt 462 |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 52330 atatcacagatgtttgtttggacgagaatgctgtgtcaagtgatccacttctggcttt 52387
>gb|AC092896.9| Homo sapiens 3 BAC RP11-274J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170330 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 ttcaggaaaaggaaggccatg 317 ||||||||||||||||||||| Sbjct: 5623 ttcaggaaaaggaaggccatg 5603
>gb|AC021733.12| Homo sapiens chromosome 8, clone RP11-775B15, complete sequence Length = 158341 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 ctgataatggaaaaagagtgc 233 ||||||||||||||||||||| Sbjct: 30613 ctgataatggaaaaagagtgc 30593
>gb|AC090451.6| Homo sapiens chromosome 8, clone RP11-318N11, complete sequence Length = 160671 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 ctgataatggaaaaagagtgc 233 ||||||||||||||||||||| Sbjct: 142421 ctgataatggaaaaagagtgc 142401
>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224566 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 tcaagtgatccacttctggct 460 ||||||||||||||||||||| Sbjct: 150831 tcaagtgatccacttctggct 150851
>gb|AC141471.4| Mus musculus BAC clone RP24-326K11 from 18, complete sequence Length = 216048 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 174 agagatgtgatgtctgcccaatttgcaga 202 ||||||||||||||||||| |||| |||| Sbjct: 79233 agagatgtgatgtctgccccatttacaga 79205
>emb|AL158152.18| Human DNA sequence from clone RP11-2B6 on chromosome 9q22.2-31.1 Contains a novel gene and a CpG island, complete sequence Length = 114517 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gctgagtgtagccagagatg 180 |||||||||||||||||||| Sbjct: 21515 gctgagtgtagccagagatg 21534
>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a novel gene, complete sequence Length = 103124 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cagagatgtgatgtctgccc 192 |||||||||||||||||||| Sbjct: 64814 cagagatgtgatgtctgccc 64833
>emb|Z99110.2|BSUB0007 Bacillus subtilis complete genome (section 7 of 21): from 1209742 to 1410982 Length = 201241 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 cctgataatggaaaaagagtgcgg 235 |||||| ||||||||||||||||| Sbjct: 68600 cctgatgatggaaaaagagtgcgg 68623
>emb|AL162459.2|ATF16L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16L2 Length = 111338 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 aattcctgataatggaaaaa 227 |||||||||||||||||||| Sbjct: 58046 aattcctgataatggaaaaa 58065
>emb|AJ720973.1| Gallus gallus mRNA for hypothetical protein, clone 31i7 Length = 3174 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 tgctgtgtcaagtgatccac 452 |||||||||||||||||||| Sbjct: 1329 tgctgtgtcaagtgatccac 1310
>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 204302 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 415 tgtttgtttggatgaggatgctgt 438 |||||||||||||||||| ||||| Sbjct: 53823 tgtttgtttggatgaggaagctgt 53800
>dbj|AB016879.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRB17 Length = 75744 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 417 tttgtttggatgaggatgctgtgtcaag 444 ||||||||||||||| |||| ||||||| Sbjct: 35625 tttgtttggatgaggttgctctgtcaag 35652
>emb|AL731871.12| Mouse DNA sequence from clone RP23-111J19 on chromosome 2, complete sequence Length = 195003 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 tttggatgaggatgctgtgtcaag 444 ||||||||||||||||||| |||| Sbjct: 180163 tttggatgaggatgctgtggcaag 180186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,459,266 Number of Sequences: 3902068 Number of extensions: 4459266 Number of successful extensions: 75772 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75695 Number of HSP's gapped (non-prelim): 72 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)