ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26c02 |
|---|---|
| Clone Library Name | barley_pub |
>ILVD_GEOKA (Q5KYA5) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 559 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Frame = -3 Query: 399 DCDERPVIVWKEVLE*HVGDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGT 226 D D+ + V ++ G ++++ FG ++ EA++ G +P ++N++ + IG Sbjct: 31 DFDKPFIAVVNSYIDIIPGHVHLQEFGRIVKEAIREAGGVPFEMNTIGVDDGIAMGHIGM 90 Query: 225 RSELPT--MLANGYHNTTLRH---ASLVVPQC 145 R LP+ ++A+ H + +P C Sbjct: 91 RYSLPSREIIADSIETVISAHWFDGMVCIPNC 122
>TRI_SULSO (P95871) Tricorn protease homolog (EC 3.4.21.-)| Length = 1068 Score = 30.4 bits (67), Expect = 2.2 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = +1 Query: 229 PNGNLIYKGGEAHAVDVSREMSLDSFKDEVSKVFHVDVTDMSFKYFLPNNNRTLITISCD 408 PNG++I E V + ++ S + S++ V V+ K L NN L D Sbjct: 390 PNGDVIGVNDEDKLVILGKDGSEKVINKDFSRIERVKVSPDGKKVLLSNNKLELWVYEID 449 Query: 409 RDLQRMVD 432 D R++D Sbjct: 450 NDNARLID 457
>Y779_LACPL (Q88YI4) UPF0042 protein lp_0779| Length = 294 Score = 29.6 bits (65), Expect = 3.8 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 283 REMSLDSFKDEVSKVFHVDVTDMSFKYFLP 372 RE D F+ + + FH+++ FKY LP Sbjct: 151 RESIFDKFETDQDETFHIEMLSFGFKYGLP 180
>ILVD_BACSU (P51785) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) (Vegetative| protein 110) (VEG110) Length = 557 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Frame = -3 Query: 345 GDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGTRSELPT--MLANGYHNTT 178 G ++++ FG ++ EA++ G +P + N++ + IG R LP+ ++A+ Sbjct: 48 GHVHLQEFGKIVKEAIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVV 107 Query: 177 LRH---ASLVVPQC 145 H + +P C Sbjct: 108 SAHWFDGMVCIPNC 121
>ILVD_BACHK (Q6HKA0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = -3 Query: 399 DCDERPVIVWKEVLE*HVGDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGT 226 D D+ + + +E G ++ FG L+ EAV+ G +P + N++ + IG Sbjct: 28 DFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEAVRAAGMVPFEFNTIGVDDGIAMGHIGM 87 Query: 225 RSELPT--MLANGYHNTTLRH---ASLVVPQC 145 R LP+ ++A+ H + +P C Sbjct: 88 RYSLPSREIIADSVETVVNAHWFDGMICIPNC 119
>ILVD_BACCZ (Q63CV3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = -3 Query: 399 DCDERPVIVWKEVLE*HVGDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGT 226 D D+ + + +E G ++ FG L+ EAV+ G +P + N++ + IG Sbjct: 28 DFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEAVRAAGMVPFEFNTIGVDDGIAMGHIGM 87 Query: 225 RSELPT--MLANGYHNTTLRH---ASLVVPQC 145 R LP+ ++A+ H + +P C Sbjct: 88 RYSLPSREIIADSVETVVNAHWFDGMICIPNC 119
>ILVD_BACCR (Q81F26) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = -3 Query: 399 DCDERPVIVWKEVLE*HVGDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGT 226 D D+ + + +E G ++ FG L+ EAV+ G +P + N++ + IG Sbjct: 28 DFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEAVRAAGMVPFEFNTIGVDDGIAMGHIGM 87 Query: 225 RSELPT--MLANGYHNTTLRH---ASLVVPQC 145 R LP+ ++A+ H + +P C Sbjct: 88 RYSLPSREIIADSVETVVNAHWFDGMICIPNC 119
>ILVD_BACC1 (Q9XBI3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = -3 Query: 399 DCDERPVIVWKEVLE*HVGDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGT 226 D D+ + + +E G ++ FG L+ EAV+ G +P + N++ + IG Sbjct: 28 DFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEAVRAAGMVPFEFNTIGVDDGIAMGHIGM 87 Query: 225 RSELPT--MLANGYHNTTLRH---ASLVVPQC 145 R LP+ ++A+ H + +P C Sbjct: 88 RYSLPSREIIADSVETVVNAHWFDGMICIPNC 119
>ILVD_BACAN (Q81S26) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = -3 Query: 399 DCDERPVIVWKEVLE*HVGDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGT 226 D D+ + + +E G ++ FG L+ EAV+ G +P + N++ + IG Sbjct: 28 DFDKPFIAICNSFIEIIPGHKHLNEFGKLVKEAVRAAGMVPFEFNTIGVDDGIAMGHIGM 87 Query: 225 RSELPT--MLANGYHNTTLRH---ASLVVPQC 145 R LP+ ++A+ H + +P C Sbjct: 88 RYSLPSREIIADSVETVVNAHWFDGMICIPNC 119
>MGAT1_CAEEL (Q11068) Putative alpha-1,3-mannosyl-glycoprotein| 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I) (GNT-I) (GlcNAc-T I) Length = 449 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 6/42 (14%) Frame = +3 Query: 171 GGGWYCGSHLPTW------WGVHFWSQWEFDLQRRRSARC*R 278 G GW S TW W V FW W D RR+ +C R Sbjct: 256 GLGWMMSSK--TWHELEPIWPVGFWDDWMRDPARRKDRQCIR 295
>UBP5_YEAST (P39944) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) Length = 805 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 302 ASRMRCPKCSMLMSPTCHSSTSFQTITGRSSQSPAIEICN 421 ASR++C C H+ST++QT + S P ++ CN Sbjct: 614 ASRLQCQVCE-------HTSTTYQTFSVLSVPVPRVKTCN 646
>ILVD_BACLD (Q65IB0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 558 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Frame = -3 Query: 345 GDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGTRSELPT--MLANGYHNTT 178 G ++++ FG ++ EA++ G +P + N++ + IG R LP+ ++A+ Sbjct: 49 GHVHLQEFGKIVKEAIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADSVETVV 108 Query: 177 LRH---ASLVVPQC 145 H + +P C Sbjct: 109 SAHWFDGMVCIPNC 122
>FEN_METMA (Q8PYF6) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 29.3 bits (64), Expect = 4.9 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = +1 Query: 241 LIYKGGEAHAVDVSREMSLDSFKDEVSKVF-HVDVT-DMSFKYFLPNNNRTLITISCDRD 414 LI K G HAV + M +++ D + ++F H DVT D K+ P++ + LI CD + Sbjct: 252 LIKKHGNIHAVIREKGMEIEAL-DSIKELFTHPDVTDDYEIKWGKPDSEK-LINFLCDEN 309
>ATC4_SCHPO (O14072) Cation-transporting ATPase 4 (EC 3.6.3.-)| Length = 1211 Score = 29.3 bits (64), Expect = 4.9 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +1 Query: 217 FTSGPNGNLIYKGGEAHAVDVSREMSLDSFKDEVSKVFHVDVTDMSFKYFL 369 F S P G++ YKG V + R S S V +V V+ SFK F+ Sbjct: 565 FVSAPEGSVFYKG----KVQIIRNFQFSSALKRQSSVSNVRVSGGSFKTFV 611
>ILVD_SYMTH (Q67KX6) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 565 Score = 29.3 bits (64), Expect = 4.9 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Frame = -3 Query: 345 GDINMEHFGHLILEAVK--GHLPRDVNSVRFSSFVNQIPIGTRSELPT--MLANGYHNTT 178 G ++++ FG L+ EAV+ G +P N++ + IG R LP+ ++A+ Sbjct: 51 GHVHLKEFGDLVKEAVREAGGVPFIFNTIGVDDGIAMGHIGMRYSLPSRELIADAVETVI 110 Query: 177 LRH---ASLVVPQC 145 H A + +P C Sbjct: 111 EAHQLDALICIPNC 124
>YCF2_NYMAL (Q6EVY7) Protein ycf2| Length = 2253 Score = 28.5 bits (62), Expect = 8.4 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Frame = -3 Query: 435 KINHPLQISIAGDCDERPVIVWKEVLE*HVGDINMEHFGHLILEAVKGHLPRDVN--SVR 262 +I PL+++ A P I+W ++ D+ + +L L + HLPRD S R Sbjct: 1682 EITLPLELAKAMS----PCIIWIP----NIHDLYVNESNYLSLGLLVNHLPRDCERCSTR 1733 Query: 261 FSSFVNQIPIGTRSELPTMLANGYHNTTLRHASLVVPQ 148 + I + + P ++A NT ++ L++PQ Sbjct: 1734 NILVIASTHIPQKVD-PALIAPNKSNTCIKIRRLLIPQ 1770
>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit) Length = 2353 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +2 Query: 215 SSLLVPMGI*FTKEEKRTLLTSLGRCPLTASRMRCPKCSMLMSPTCHSSTSFQTITGRSS 394 SS P G +R+ +SLGR P R +C + L+S ST + GR++ Sbjct: 1126 SSPCAPWGPSGAWSSRRSSWSSLGRAPSLKRRGQCGERESLLSGEGKGSTDDEAEDGRAA 1185 Query: 395 QSP 403 P Sbjct: 1186 PGP 1188
>REV1_MOUSE (Q920Q2) DNA repair protein REV1 (EC 2.7.7.-) (Rev1-like terminal| deoxycytidyl transferase) Length = 1249 Score = 28.5 bits (62), Expect = 8.4 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Frame = +2 Query: 209 VGSSLLVPMGI*FTKEEKRT----------LLTSLGRCPLTASRMRCPKCSMLMSPTCHS 358 VG+S+ + + T+EEKR + L +A +R P + +SP+ HS Sbjct: 245 VGNSVASRLSLDSTQEEKRAEKSNADFRDCTVQHLQHSTRSADALRSPHRTNSLSPSLHS 304 Query: 359 STSFQTITGRSSQSPAIEICNGWLILLLVLPS 454 +T + Q P+ L L V PS Sbjct: 305 NTKINGAHHSTVQGPSSTKSTSVLTLSKVAPS 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,985,451 Number of Sequences: 219361 Number of extensions: 1059007 Number of successful extensions: 3950 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3852 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3948 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
