ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl26b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
2dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
3dbj|AK067082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
4gb|AC110170.6| Mus musculus chromosome 12, clone RP23-301G24, co... 46 0.098
5emb|CT010476.10| Mouse DNA sequence from clone RP23-339L19 on ch... 46 0.098
6gb|AC142244.11| Mus musculus chromosome 1, clone RP23-79H24, com... 44 0.39
7gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, com... 44 0.39
8emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chro... 44 0.39
9gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome... 44 0.39
10gb|AC102862.7| Mus musculus chromosome 8, clone RP24-535D22, com... 42 1.5
11gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, com... 42 1.5
12gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome... 42 1.5
13gb|AC124361.4| Mus musculus BAC clone RP24-528I8 from chromosome... 42 1.5
14gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosom... 42 1.5
15gb|AC162872.9| Mus musculus chromosome 3, clone RP24-346J6, comp... 42 1.5
16gb|AC154396.11| Mus musculus chromosome 3, clone RP24-254D5, com... 42 1.5
17gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, comp... 42 1.5
18emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chro... 42 1.5
19emb|CR954970.9| Mouse DNA sequence from clone RP23-402J24 on chr... 42 1.5
20gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome... 42 1.5
21gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosom... 42 1.5
22gb|AC127280.3| Mus musculus BAC clone RP24-249B17 from chromosom... 42 1.5
23gb|AC124346.3| Mus musculus BAC clone RP24-460E12 from chromosom... 42 1.5
24gb|AC154575.2| Mus musculus BAC clone RP23-248E1 from chromosome... 42 1.5
25gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome... 42 1.5
26gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosom... 42 1.5
27dbj|AK049605.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 42 1.5
28dbj|AK045210.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 42 1.5
29gb|AC055766.31|AC055766 Mus musculus X BAC RP23-149C7 (Roswell P... 42 1.5
30gb|AC131662.4| Mus musculus BAC clone RP23-257H24 from chromosom... 42 1.5
31gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome... 42 1.5
32emb|BX324122.17| Mouse DNA sequence from clone RP23-317B9 on chr... 42 1.5
33gb|AC154408.2| Mus musculus BAC clone RP24-259A5 from 16, comple... 42 1.5
34gb|AC083910.9| Mus musculus 1 BAC RP23-337F12 (Roswell Park Canc... 42 1.5
35gb|AC166336.15| Mus musculus chromosome 1, clone RP24-74G12, com... 42 1.5
36emb|CT010450.15| Mouse DNA sequence from clone RP23-443B9 on chr... 42 1.5
37emb|AL645797.11| Mouse DNA sequence from clone RP23-153J5 on chr... 42 1.5
38gb|AC145211.3| Mus musculus BAC clone RP23-419G4 from 8, complet... 42 1.5
39gb|AC131699.4| Mus musculus BAC clone RP23-440F17 from 1, comple... 42 1.5
40emb|CT025159.8| Mouse DNA sequence from clone RP23-336K1 on chro... 42 1.5
41emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the... 42 1.5
42emb|AL713884.1|CNS07YP1 Mus musculus chromosome 11 region in the... 42 1.5
43emb|AL713840.1|CNS07YOU Mus musculus chromosome 11 region in the... 42 1.5
44gb|AY741093.1| Integration vector pJK202, complete sequence 40 6.0
45gb|AC115718.14| Mus musculus chromosome 8, clone RP23-247P3, com... 40 6.0
46emb|AJ744860.1| uncultured bacterium pTB11 plasmid complete genome 40 6.0
47gb|AC132142.3| Mus musculus BAC clone RP23-75I5 from chromosome ... 40 6.0
48emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chr... 40 6.0
49emb|BX248578.6| Mouse DNA sequence from clone RP23-227K23 on chr... 40 6.0
50gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Canc... 40 6.0
51emb|X59793.1|ECRP4TRA E.coli broad-host-range IncP-alpha plasmid... 40 6.0
52dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.0
53gb|AC132390.4| Mus musculus BAC clone RP23-453P1 from chromosome... 40 6.0
54dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
55gb|AC154245.2| Mus musculus BAC clone RP24-326A24 from chromosom... 40 6.0
56dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 6.0
57dbj|AP004723.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
58gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, com... 40 6.0
59gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, comp... 40 6.0
60gb|AC140438.3| Mus musculus BAC clone RP24-106N10 from 12, compl... 40 6.0
61gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, comple... 40 6.0
62emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chr... 40 6.0
63gb|L27758.1|BIACOMGEN Birmingham IncP-alpha plasmid (R18, R68, R... 40 6.0
64emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chro... 40 6.0 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 184      tactacacgcaatgggggcagagcctcgtcatcgccggctc 224
                |||||||| |||||||||||||| ||  |||||||||||||
Sbjct: 27907755 tactacacacaatgggggcagagtcttctcatcgccggctc 27907795
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>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 184   tactacacgcaatgggggcagagcctcgtcatcgccggctc 224
             |||||||| |||||||||||||| ||  |||||||||||||
Sbjct: 71113 tactacacacaatgggggcagagtcttctcatcgccggctc 71153
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>dbj|AK067082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096E12, full
           insert sequence
          Length = 3335

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 184 tactacacgcaatgggggcagagcctcgtcatcgccggctc 224
           |||||||| |||||||||||||| ||  |||||||||||||
Sbjct: 310 tactacacacaatgggggcagagtcttctcatcgccggctc 350
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>gb|AC110170.6| Mus musculus chromosome 12, clone RP23-301G24, complete sequence
          Length = 173081

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 254    agcaggggctgtccctgagcccg 276
              |||||||||||||||||||||||
Sbjct: 112875 agcaggggctgtccctgagcccg 112853
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>emb|CT010476.10| Mouse DNA sequence from clone RP23-339L19 on chromosome 12, complete
            sequence
          Length = 235489

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 254  agcaggggctgtccctgagcccg 276
            |||||||||||||||||||||||
Sbjct: 6720 agcaggggctgtccctgagcccg 6698
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>gb|AC142244.11| Mus musculus chromosome 1, clone RP23-79H24, complete sequence
          Length = 132061

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 16    tccctccctcccgtgcctccatccat 41
             |||||||||||||| |||||||||||
Sbjct: 48569 tccctccctcccgtccctccatccat 48544
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>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence
          Length = 235703

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 16   tccctccctcccgtgcctccatccat 41
            |||||||||||||| |||||||||||
Sbjct: 4477 tccctccctcccgtccctccatccat 4502
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>emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chromosome 16, complete
              sequence
          Length = 212227

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 253    aagcaggggctgtccctgagcc 274
              ||||||||||||||||||||||
Sbjct: 105401 aagcaggggctgtccctgagcc 105422
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>gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome 16, complete sequence
          Length = 192492

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 253    aagcaggggctgtccctgagcc 274
              ||||||||||||||||||||||
Sbjct: 173242 aagcaggggctgtccctgagcc 173263
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>gb|AC102862.7| Mus musculus chromosome 8, clone RP24-535D22, complete sequence
          Length = 140264

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 135441 agcaggggctgtccctgagcc 135421
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>gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, complete sequence
          Length = 198541

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 69564 agcaggggctgtccctgagcc 69544
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>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete sequence
          Length = 183478

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 141214 agcaggggctgtccctgagcc 141194
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>gb|AC124361.4| Mus musculus BAC clone RP24-528I8 from chromosome 1, complete sequence
          Length = 172848

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 91409 agcaggggctgtccctgagcc 91389
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>gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosome 12, complete
             sequence
          Length = 227835

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 50073 agcaggggctgtccctgagcc 50093
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>gb|AC162872.9| Mus musculus chromosome 3, clone RP24-346J6, complete sequence
          Length = 147221

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  agcaggggctgtccctgagcc 274
            |||||||||||||||||||||
Sbjct: 7969 agcaggggctgtccctgagcc 7989
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>gb|AC154396.11| Mus musculus chromosome 3, clone RP24-254D5, complete sequence
          Length = 153799

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 72028 agcaggggctgtccctgagcc 72048
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>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence
          Length = 241184

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 111061 agcaggggctgtccctgagcc 111081
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>emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chromosome 16, complete
             sequence
          Length = 258862

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 97719 agcaggggctgtccctgagcc 97739
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>emb|CR954970.9| Mouse DNA sequence from clone RP23-402J24 on chromosome X, complete
             sequence
          Length = 99959

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 85306 agcaggggctgtccctgagcc 85286
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>gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome 7, complete sequence
          Length = 225732

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 199534 agcaggggctgtccctgagcc 199554
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>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence
          Length = 208499

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 17051 agcaggggctgtccctgagcc 17071
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>gb|AC127280.3| Mus musculus BAC clone RP24-249B17 from chromosome 7, complete sequence
          Length = 158147

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 71596 agcaggggctgtccctgagcc 71616
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>gb|AC124346.3| Mus musculus BAC clone RP24-460E12 from chromosome 12, complete
             sequence
          Length = 203150

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 12709 agcaggggctgtccctgagcc 12689
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>gb|AC154575.2| Mus musculus BAC clone RP23-248E1 from chromosome 14, complete sequence
          Length = 210912

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 95751 agcaggggctgtccctgagcc 95731
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>gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome 14, complete sequence
          Length = 196901

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 40174 agcaggggctgtccctgagcc 40154
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>gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosome 16, complete
             sequence
          Length = 141092

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 20636 agcaggggctgtccctgagcc 20656
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>dbj|AK049605.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530002H12
            product:unclassifiable, full insert sequence
          Length = 2153

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  agcaggggctgtccctgagcc 274
            |||||||||||||||||||||
Sbjct: 1705 agcaggggctgtccctgagcc 1725
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>dbj|AK045210.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130047N05
           product:unclassifiable, full insert sequence
          Length = 1460

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 agcaggggctgtccctgagcc 274
           |||||||||||||||||||||
Sbjct: 312 agcaggggctgtccctgagcc 332
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>gb|AC055766.31|AC055766 Mus musculus X BAC RP23-149C7 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 222658

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 202261 agcaggggctgtccctgagcc 202281
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>gb|AC131662.4| Mus musculus BAC clone RP23-257H24 from chromosome 7, complete sequence
          Length = 178528

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 63364 agcaggggctgtccctgagcc 63384
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>gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome 13, complete sequence
          Length = 183319

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 73375 agcaggggctgtccctgagcc 73355
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>emb|BX324122.17| Mouse DNA sequence from clone RP23-317B9 on chromosome X, complete
             sequence
          Length = 104805

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 87108 agcaggggctgtccctgagcc 87128
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>gb|AC154408.2| Mus musculus BAC clone RP24-259A5 from 16, complete sequence
          Length = 158312

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 95223 agcaggggctgtccctgagcc 95203
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>gb|AC083910.9| Mus musculus 1 BAC RP23-337F12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208408

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 173513 agcaggggctgtccctgagcc 173533
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>gb|AC166336.15| Mus musculus chromosome 1, clone RP24-74G12, complete sequence
          Length = 215765

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 160599 agcaggggctgtccctgagcc 160579
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>emb|CT010450.15| Mouse DNA sequence from clone RP23-443B9 on chromosome 12, complete
              sequence
          Length = 193155

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 124867 agcaggggctgtccctgagcc 124847
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>emb|AL645797.11| Mouse DNA sequence from clone RP23-153J5 on chromosome 11 Contains a
             novel gene and a CpG island, complete sequence
          Length = 190784

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 16150 agcaggggctgtccctgagcc 16130
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>gb|AC145211.3| Mus musculus BAC clone RP23-419G4 from 8, complete sequence
          Length = 191166

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 90052 agcaggggctgtccctgagcc 90032
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>gb|AC131699.4| Mus musculus BAC clone RP23-440F17 from 1, complete sequence
          Length = 200544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 11611 agcaggggctgtccctgagcc 11591
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>emb|CT025159.8| Mouse DNA sequence from clone RP23-336K1 on chromosome 14, complete
            sequence
          Length = 198530

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  agcaggggctgtccctgagcc 274
            |||||||||||||||||||||
Sbjct: 6127 agcaggggctgtccctgagcc 6147
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>emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
              clone 330D23 of library Caltech CITB-BAC from chromosome 11
              of Mus musculus (mouse)
          Length = 181075

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 175952 agcaggggctgtccctgagcc 175972
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>emb|AL713884.1|CNS07YP1 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
              clone 205M5 of library Caltech CITB-BAC from chromosome 11
              of Mus musculus (mouse)
          Length = 120637

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    agcaggggctgtccctgagcc 274
              |||||||||||||||||||||
Sbjct: 115513 agcaggggctgtccctgagcc 115533
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>emb|AL713840.1|CNS07YOU Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 425A1 of library Caltech CITB-BAC from chromosome 11
             of Mus musculus (mouse)
          Length = 128620

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   agcaggggctgtccctgagcc 274
             |||||||||||||||||||||
Sbjct: 17953 agcaggggctgtccctgagcc 17973
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>gb|AY741093.1| Integration vector pJK202, complete sequence
          Length = 53204

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   cgccggctccgcgccggcgc 235
             ||||||||||||||||||||
Sbjct: 26284 cgccggctccgcgccggcgc 26303
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>gb|AC115718.14| Mus musculus chromosome 8, clone RP23-247P3, complete sequence
          Length = 232751

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    gcaggggctgtccctgagcc 274
              ||||||||||||||||||||
Sbjct: 107575 gcaggggctgtccctgagcc 107594
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>emb|AJ744860.1| uncultured bacterium pTB11 plasmid complete genome
          Length = 68869

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   cgccggctccgcgccggcgc 235
             ||||||||||||||||||||
Sbjct: 46767 cgccggctccgcgccggcgc 46786
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>gb|AC132142.3| Mus musculus BAC clone RP23-75I5 from chromosome 7, complete sequence
          Length = 221548

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   agcaggggctgtccctgagc 273
             ||||||||||||||||||||
Sbjct: 42445 agcaggggctgtccctgagc 42426
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>emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 152898

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tgaagagatggggaagaaca 157
             ||||||||||||||||||||
Sbjct: 89539 tgaagagatggggaagaaca 89558
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>emb|BX248578.6| Mouse DNA sequence from clone RP23-227K23 on chromosome 11 Contains a
             pseudogene similar to part of eukaryotic translation
             initiation factor 3, subunit 5 (epsilon) Eif3s5, complete
             sequence
          Length = 160629

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   aagcaggggctgtccctgag 272
             ||||||||||||||||||||
Sbjct: 13065 aagcaggggctgtccctgag 13046
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>gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 205657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gcaggggctgtccctgagcc 274
             ||||||||||||||||||||
Sbjct: 75951 gcaggggctgtccctgagcc 75970
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>emb|X59793.1|ECRP4TRA E.coli broad-host-range IncP-alpha plasmid RP4 traA, traB, traC-1,
            traC-2 & traD genes
          Length = 4412

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  cgccggctccgcgccggcgc 235
            ||||||||||||||||||||
Sbjct: 1432 cgccggctccgcgccggcgc 1413
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     ggccgccattggcgccgtcc 129
               ||||||||||||||||||||
Sbjct: 1161428 ggccgccattggcgccgtcc 1161409
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>gb|AC132390.4| Mus musculus BAC clone RP23-453P1 from chromosome 8, complete sequence
          Length = 200323

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gcaggggctgtccctgagcc 274
             ||||||||||||||||||||
Sbjct: 31987 gcaggggctgtccctgagcc 32006
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 102      ccgcccgtggccgccattggcgcc 125
                ||||||||||||||||||| ||||
Sbjct: 17040387 ccgcccgtggccgccattgtcgcc 17040364
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>gb|AC154245.2| Mus musculus BAC clone RP24-326A24 from chromosome 14, complete
             sequence
          Length = 185892

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   gcaggggctgtccctgagcc 274
             ||||||||||||||||||||
Sbjct: 98904 gcaggggctgtccctgagcc 98885
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    gccggctccgcgccggcgctcggg 240
              |||||||||||||||| |||||||
Sbjct: 425223 gccggctccgcgccggggctcggg 425200
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>dbj|AP004723.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1126_G08
          Length = 157455

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   ccgcccgtggccgccattggcgcc 125
             ||||||||||||||||||| ||||
Sbjct: 37336 ccgcccgtggccgccattgtcgcc 37313
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>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence
          Length = 226595

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   agcaggggctgtccctgagc 273
             ||||||||||||||||||||
Sbjct: 24627 agcaggggctgtccctgagc 24646
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>gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, complete sequence
          Length = 181370

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tgaagagatggggaagaaca 157
             ||||||||||||||||||||
Sbjct: 86298 tgaagagatggggaagaaca 86317
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>gb|AC140438.3| Mus musculus BAC clone RP24-106N10 from 12, complete sequence
          Length = 154736

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    agcaggggctgtccctgagc 273
              ||||||||||||||||||||
Sbjct: 117250 agcaggggctgtccctgagc 117269
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>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence
          Length = 214377

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gcaggggctgtccctgagcc 274
             ||||||||||||||||||||
Sbjct: 30909 gcaggggctgtccctgagcc 30928
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>emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chromosome 12, complete
              sequence
          Length = 214925

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    agcaggggctgtccctgagc 273
              ||||||||||||||||||||
Sbjct: 164515 agcaggggctgtccctgagc 164534
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>gb|L27758.1|BIACOMGEN Birmingham IncP-alpha plasmid (R18, R68, RK2, RP1, RP4) complete genome
          Length = 60099

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   cgccggctccgcgccggcgc 235
             ||||||||||||||||||||
Sbjct: 42508 cgccggctccgcgccggcgc 42527
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>emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chromosome X, complete
             sequence
          Length = 81921

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gaagagatggggaagaacac 158
             ||||||||||||||||||||
Sbjct: 22065 gaagagatggggaagaacac 22046


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,842,233
Number of Sequences: 3902068
Number of extensions: 3842233
Number of successful extensions: 60589
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60316
Number of HSP's gapped (non-prelim): 273
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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