>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)|
           (Nuclear factor P97)
          Length = 875

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
 Frame = +2

Query: 92  ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 268
           EL ++L  T+S D+  ++AA   L+R +    P F + L  V A  G+ Q  R+AA   +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61

Query: 269 KIFARRNMEGGLSSSDLYREFRDQL----AQALLRVEPAILRVL-IEVFRQVAEKDFVKE 433
           ++   ++        D+  +++ +     A A   V+  +L+ L  E +R  +    V  
Sbjct: 62  RLLTSKD-------PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAG 114

Query: 434 --------NSWPELVPQL 463
                   + WPEL+PQL
Sbjct: 115 IACAEIPVSQWPELIPQL 132

>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)|
           (Nuclear factor P97) (Importin 90)
          Length = 876

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
 Frame = +2

Query: 92  ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 268
           EL ++L  T+S D+  ++AA   L+R +    P F + L  V A  G+ Q  R+AA   +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61

Query: 269 KIFARRNMEGGLSSSD--LYREFRDQL----AQALLRVEPAILRVL-IEVFRQVAEKDFV 427
           K          L+S D  +  +++ +     A A   V+  +L+ L  E +R  +    V
Sbjct: 62  K--------NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113

Query: 428 KE--------NSWPELVPQL 463
                     N WPEL+PQL
Sbjct: 114 AGIACAEIPVNQWPELIPQL 133

>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)|
           (Nuclear factor P97) (Pore targeting complex 97 kDa
           subunit) (PTAC97) (SCG)
          Length = 876

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
 Frame = +2

Query: 92  ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 268
           EL ++L  T+S D+  ++AA   L+R +    P F + L  V A  G+ Q  R+AA   +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61

Query: 269 KIFARRNMEGGLSSSD--LYREFRDQL----AQALLRVEPAILRVL-IEVFRQVAEKDFV 427
           K          L+S D  +  +++ +     A A   V+  +L+ L  E +R  +    V
Sbjct: 62  K--------NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113

Query: 428 KE--------NSWPELVPQL 463
                     + WPEL+PQL
Sbjct: 114 AGIACAEIPVSQWPELIPQL 133

>CP6D3_MUSDO (Q964Q7) Cytochrome P450 6d3 (EC 1.14.-.-) (CYPVID3) (Pyrethroid|
           resistance cytochrome P450)
          Length = 520

 Score = 32.3 bits (72), Expect = 0.66
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 269 KIFARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVAEKDF 424
           K+F R+    GL   DLY +F++Q+    L  +PA+L    E+ RQ+   DF
Sbjct: 43  KVF-RKERPFGLVMYDLYEKFQEQVVGIYLFFKPALLIRDAELARQILTSDF 93

>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis|
           susceptibility protein homolog)
          Length = 975

 Score = 32.3 bits (72), Expect = 0.66
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
 Frame = +2

Query: 95  LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALL-AVAAGDGDQGTRIAAAAYLK 271
           L   L  TLSAD      A   L+  S      +PI LL  +     D  TR+A A   K
Sbjct: 11  LAGYLQQTLSADPNVRRPAEKLLE--STELQQNYPILLLNLIDKAQMDMTTRVAGAIAFK 68

Query: 272 IFARRNMEGGLSSSDLYR-------EFRDQLAQALLRVEPAILRVLIEVFRQVAEKDFVK 430
            + +RN    L S    R         +  +   +L    A+ + L +    + + DF K
Sbjct: 69  NYIKRNWAAHLDSDGPDRIHESDRNTIKTLIVTLMLHSPVALQKQLSDAVSIIGKYDFPK 128

Query: 431 ENSWPELVPQL 463
           +  WP+L+ ++
Sbjct: 129 K--WPQLIDEM 137

>CSE1_PAGMA (Q9PTU3) Importin-alpha re-exporter (Chromosome segregation 1-like|
           protein) (Cellular apoptosis susceptibility protein)
          Length = 971

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 5/128 (3%)
 Frame = +2

Query: 95  LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 274
           L   L   L  D T    A   L+  S  G+  +P+ LL +     D   R+ AA   K 
Sbjct: 11  LTEFLRKALDPDPTVRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIRVCAAVTFKN 68

Query: 275 FARRNM-----EGGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVAEKDFVKENS 439
           + +RN      E    S       +  +   +L     I + L +    +  +DF ++  
Sbjct: 69  YIKRNWRVIEDEPNKVSDPDRTAIKANIVNLMLSSPEQIQKQLSDAISIIGREDFPQK-- 126

Query: 440 WPELVPQL 463
           WP+L+ ++
Sbjct: 127 WPDLLTEM 134

>PKP3_HUMAN (Q9Y446) Plakophilin-3|
          Length = 797

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 415 LRNLAKNFNQHSKNCRFHSKQSLSKLVAKLPVQIGRREPPFHV 287
           L  L +N +++++N    S + +S L+ KLP  +G + PP  V
Sbjct: 675 LTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEV 717

>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +2

Query: 176  AAGDPRFPIALLAVAAGDGDQGTRI-----AAAAYLKIFARRNMEGGLSSSDLYR 325
            AAGDP  P A L +   DGD          A     K   RR   G LS+ DL R
Sbjct: 885  AAGDPAEPTAALPIIRSDGDDSEAATEQLNARGTSDKTRQRRRGGGALSAQDLLR 939

>PKP3_MOUSE (Q9QY23) Plakophilin-3|
          Length = 797

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 415 LRNLAKNFNQHSKNCRFHSKQSLSKLVAKLPVQIGRREPPFHV 287
           L  L +N +++++N    S + +S L+ KLP  +G + PP  V
Sbjct: 675 LTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKCPPAEV 717

>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,|
           mitochondrial precursor
          Length = 428

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 224 GDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFRDQLAQ 349
           G+ D G  +   A+LKI A+ N++        YR+F D + Q
Sbjct: 350 GNDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQ 391

>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor|
          Length = 1115

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
 Frame = +2

Query: 146  AATAGLDRISAAGDPRFPIALLAVAAGDG----------DQGTRIAAAA 262
            AA AG    +AAGD    ++ +  AAGDG          D GT   AAA
Sbjct: 933  AAPAGASSAAAAGDSPAALSAVPAAAGDGALVPSFMSIDDDGTAAVAAA 981

>PROV_ECOLI (P14175) Glycine betaine/L-proline transport ATP-binding protein|
           proV
          Length = 400

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = -3

Query: 424 KIFLRNLAKNFNQHSKNCRFHSKQSLSK--LVAKLPVQIGRREPPFHVAPGENFQVS--R 257
           K+ ++NL K F +H +    + +Q LSK  ++ K  + +G ++    +  GE F +    
Sbjct: 4   KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLS 63

Query: 256 GSYSCTLITI 227
           GS   T++ +
Sbjct: 64  GSGKSTMVRL 73

>PRIM_BUCAI (P57164) DNA primase (EC 2.7.7.-)|
          Length = 577

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 457 RHKFRPRI----LLDKIFLRNLAKNFNQHSKNCRFH 362
           R KF+ RI     + K F +N+ KN N  S + +FH
Sbjct: 351 REKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFH 386


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,307,958
Number of Sequences: 219361
Number of extensions: 695477
Number of successful extensions: 2783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2782
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)