ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26b01 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 61.2 bits (147), Expect = 1e-09 Identities = 34/96 (35%), Positives = 51/96 (53%) Frame = +3 Query: 177 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 356 M+ + L SPD N+R AE ++ + +++ L+ EL+ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 357 LKNSLDAKDSARKGLLIQQWVSLDHSIKSQIKESLL 464 LKN++ A++ ARK Q W SL IK Q+K L Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLAL 96
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 55.8 bits (133), Expect = 6e-08 Identities = 32/96 (33%), Positives = 54/96 (56%) Frame = +3 Query: 177 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 356 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 357 LKNSLDAKDSARKGLLIQQWVSLDHSIKSQIKESLL 464 +KNSL +KD K Q+W+++D + + ++K +L Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 96
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 55.8 bits (133), Expect = 6e-08 Identities = 32/96 (33%), Positives = 54/96 (56%) Frame = +3 Query: 177 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 356 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 357 LKNSLDAKDSARKGLLIQQWVSLDHSIKSQIKESLL 464 +KNSL +KD K Q+W+++D + + ++K +L Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 96
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 48.5 bits (114), Expect = 9e-06 Identities = 32/96 (33%), Positives = 45/96 (46%) Frame = +3 Query: 177 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 356 M + IL SPD N +A+ ++Q NLP FL +LS L N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 357 LKNSLDAKDSARKGLLIQQWVSLDHSIKSQIKESLL 464 LKN L +KD +W I+ IK ++L Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNIL 102
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 48.5 bits (114), Expect = 9e-06 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = +3 Query: 210 SPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSA 389 SPD N+R +E +K+ N F S L ++ E R LA + LKN L +KDS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 390 RKGLLIQQWVS-LDHSIKSQIKESLL 464 + Q+W++ + K+QIK + L Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNAL 101
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 45.4 bits (106), Expect = 8e-05 Identities = 29/96 (30%), Positives = 52/96 (54%) Frame = +3 Query: 177 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 356 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 357 LKNSLDAKDSARKGLLIQQWVSLDHSIKSQIKESLL 464 ++ L +KD K Q+W+++D + + ++K +L Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 95
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +3 Query: 174 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 350 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 351 IILKNSLDA 377 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +3 Query: 174 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 350 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 351 IILKNSLDA 377 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TOP2_LEICH (O61078) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1236 Score = 35.4 bits (80), Expect = 0.082 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +3 Query: 219 GNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSARK 395 G L + N+K+ + + L + LSL +EL + R P R +++ DA S K Sbjct: 467 GKLLNVRNKNLKRLKTCKGLQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGSHIK 526 Query: 396 GLLIQQWVSL 425 GL+I + SL Sbjct: 527 GLVINAFESL 536
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 174 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 350 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 351 IILKNSLDA 377 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 174 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 350 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 351 IILKNSLDA 377 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 32.3 bits (72), Expect = 0.70 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +3 Query: 177 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 356 MDI ++++ AQS D + R AE + Q+ + + +L+ E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 357 LK 362 L+ Sbjct: 61 LR 62
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.91 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -1 Query: 315 HSITPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 196 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>K1949_PIG (Q767M0) Protein KIAA1949 homolog| Length = 618 Score = 29.6 bits (65), Expect = 4.5 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 215 WRLSS*QNLSDIHDCCTCPEERICRGMLPRSLARLPASQT 96 WRLSS + D + C EER GM+P + P + T Sbjct: 267 WRLSSGEERKDCLEECGRKEERTLPGMVPEDITGSPETLT 306
>YPB3_LACLA (P42097) Putative HTH-type transcriptional regulator in lacX| 3'region (ORF3) Length = 196 Score = 29.3 bits (64), Expect = 5.9 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Frame = +3 Query: 192 ILLAAQSPDGNLRSAAE------ANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGI 353 IL +SP NL+ + A K + + N ++ LS L D R P + + Sbjct: 75 ILSRDESPLANLKEMLDWIYSDHAQKKIYYGCPVGNLVIELSA-LDEDFRKPLEQLFSD- 132 Query: 354 ILKNSLDAKDSARKGLLIQQWVSLDHSIKSQIKESLLI 467 L+ + SA GLL++Q + H+I +QI+ SLL+ Sbjct: 133 -LQKKIAENLSALTGLLVKQNLPAAHAIIAQIQGSLLL 169
>KPYK_TRYBO (Q27788) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 498 Score = 28.9 bits (63), Expect = 7.7 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -2 Query: 239 CC*AKVTIWRLSS*QNLSDIHDCCTCPEERIC 144 CC +VT+W +++ + + ++ PEE IC Sbjct: 350 CCETQVTMWNMAAFEAIKNLQSFPLIPEEAIC 381
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 28.9 bits (63), Expect = 7.7 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = +3 Query: 246 NIKQFQEQNLPNFLLSLSVELSN-----DERPPESRRLAGIILKNSLDAKDSARKGLLIQ 410 ++ + ++NL VE+ N DERP E+ R I K KD+ K LLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 411 QWVSLDHSIKSQ-IKESL 461 + + IKE L Sbjct: 259 HLKEFSEIVSEELIKERL 276 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,062,231 Number of Sequences: 219361 Number of extensions: 1050220 Number of successful extensions: 2875 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2808 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2873 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
